neochrom reconst

MyLibrary.bib

@@ -0,0 +1,102 @@
+@article{prjibelski_using_2020,
+	title = {Using {SPAdes} De Novo Assembler},
+	volume = {70},
+	issn = {1934-3396, 1934-340X},
+	url = {https://onlinelibrary.wiley.com/doi/10.1002/cpbi.102},
+	doi = {10.1002/cpbi.102},
+	number = {1},
+	journaltitle = {Current Protocols in Bioinformatics},
+	shortjournal = {Current Protocols in Bioinformatics},
+	author = {Prjibelski, Andrey and Antipov, Dmitry and Meleshko, Dmitry and Lapidus, Alla and Korobeynikov, Anton},
+	urldate = {2021-05-26},
+	date = {2020-06},
+	langid = {english},
+}
+
+@article{li_fast_2009,
+	title = {Fast and accurate short read alignment with Burrows-Wheeler transform},
+	volume = {25},
+	issn = {1367-4811},
+	doi = {10.1093/bioinformatics/btp324},
+	abstract = {{MOTIVATION}: The enormous amount of short reads generated by the new {DNA} sequencing technologies call for the development of fast and accurate read alignment programs. A first generation of hash table-based methods has been developed, including {MAQ}, which is accurate, feature rich and fast enough to align short reads from a single individual. However, {MAQ} does not support gapped alignment for single-end reads, which makes it unsuitable for alignment of longer reads where indels may occur frequently. The speed of {MAQ} is also a concern when the alignment is scaled up to the resequencing of hundreds of individuals.
+{RESULTS}: We implemented Burrows-Wheeler Alignment tool ({BWA}), a new read alignment package that is based on backward search with Burrows-Wheeler Transform ({BWT}), to efficiently align short sequencing reads against a large reference sequence such as the human genome, allowing mismatches and gaps. {BWA} supports both base space reads, e.g. from Illumina sequencing machines, and color space reads from {AB} {SOLiD} machines. Evaluations on both simulated and real data suggest that {BWA} is approximately 10-20x faster than {MAQ}, while achieving similar accuracy. In addition, {BWA} outputs alignment in the new standard {SAM} (Sequence Alignment/Map) format. Variant calling and other downstream analyses after the alignment can be achieved with the open source {SAMtools} software package.
+{AVAILABILITY}: http://maq.sourceforge.net.},
+	pages = {1754--1760},
+	number = {14},
+	journaltitle = {Bioinformatics (Oxford, England)},
+	shortjournal = {Bioinformatics},
+	author = {Li, Heng and Durbin, Richard},
+	date = {2009-07-15},
+	pmid = {19451168},
+	pmcid = {PMC2705234},
+	keywords = {Algorithms, Genomics, Sequence Alignment, Sequence Analysis, {DNA}, Software},
+	file = {Full Text:/home/thomas/Zotero/storage/RAZYFYCS/Li and Durbin - 2009 - Fast and accurate short read alignment with Burrow.pdf:application/pdf},
+}
+
+@article{altschul_basic_1990,
+	title = {Basic local alignment search tool},
+	volume = {215},
+	issn = {0022-2836},
+	doi = {10.1016/S0022-2836(05)80360-2},
+	abstract = {A new approach to rapid sequence comparison, basic local alignment search tool ({BLAST}), directly approximates alignments that optimize a measure of local similarity, the maximal segment pair ({MSP}) score. Recent mathematical results on the stochastic properties of {MSP} scores allow an analysis of the performance of this method as well as the statistical significance of alignments it generates. The basic algorithm is simple and robust; it can be implemented in a number of ways and applied in a variety of contexts including straightforward {DNA} and protein sequence database searches, motif searches, gene identification searches, and in the analysis of multiple regions of similarity in long {DNA} sequences. In addition to its flexibility and tractability to mathematical analysis, {BLAST} is an order of magnitude faster than existing sequence comparison tools of comparable sensitivity.},
+	pages = {403--410},
+	number = {3},
+	journaltitle = {Journal of Molecular Biology},
+	shortjournal = {J Mol Biol},
+	author = {Altschul, S. F. and Gish, W. and Miller, W. and Myers, E. W. and Lipman, D. J.},
+	date = {1990-10-05},
+	pmid = {2231712},
+	keywords = {Algorithms, Software, Amino Acid Sequence, Base Sequence, Databases, Factual, Mutation, Sensitivity and Specificity, Sequence Homology, Nucleic Acid},
+}
+
+@article{quinlan_bedtools_2010,
+	title = {{BEDTools}: a flexible suite of utilities for comparing genomic features},
+	volume = {26},
+	issn = {1460-2059, 1367-4803},
+	url = {https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btq033},
+	doi = {10.1093/bioinformatics/btq033},
+	shorttitle = {{BEDTools}},
+	pages = {841--842},
+	number = {6},
+	journaltitle = {Bioinformatics},
+	author = {Quinlan, Aaron R. and Hall, Ira M.},
+	urldate = {2021-05-26},
+	date = {2010-03-15},
+	langid = {english},
+	file = {Full Text:/home/thomas/Zotero/storage/9QFL3W2J/Quinlan and Hall - 2010 - BEDTools a flexible suite of utilities for compar.pdf:application/pdf},
+}
+
+@article{chen_fastp_2018,
+	title = {fastp: an ultra-fast all-in-one {FASTQ} preprocessor},
+	volume = {34},
+	issn = {1367-4803, 1460-2059},
+	url = {https://academic.oup.com/bioinformatics/article/34/17/i884/5093234},
+	doi = {10.1093/bioinformatics/bty560},
+	shorttitle = {fastp},
+	pages = {i884--i890},
+	number = {17},
+	journaltitle = {Bioinformatics},
+	author = {Chen, Shifu and Zhou, Yanqing and Chen, Yaru and Gu, Jia},
+	urldate = {2021-05-26},
+	date = {2018-09-01},
+	langid = {english},
+	file = {Full Text:/home/thomas/Zotero/storage/6R62R2P4/Chen et al. - 2018 - fastp an ultra-fast all-in-one FASTQ preprocessor.pdf:application/pdf},
+}
+
+@article{faust_samblaster_2014,
+	title = {{SAMBLASTER}: fast duplicate marking and structural variant read extraction},
+	volume = {30},
+	issn = {1367-4803, 1460-2059},
+	url = {https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btu314},
+	doi = {10.1093/bioinformatics/btu314},
+	shorttitle = {{SAMBLASTER}},
+	pages = {2503--2505},
+	number = {17},
+	journaltitle = {Bioinformatics},
+	shortjournal = {Bioinformatics},
+	author = {Faust, G. G. and Hall, I. M.},
+	urldate = {2021-05-26},
+	date = {2014-09-01},
+	langid = {english},
+	file = {Full Text:/home/thomas/Zotero/storage/5PRKXKZP/Faust and Hall - 2014 - SAMBLASTER fast duplicate marking and structural .pdf:application/pdf},
+}

presentation.aux

@@ -15,8 +15,7 @@
 \fi}
 \global\let\hyper@last\relax 
 \gdef\HyperFirstAtBeginDocument#1{#1}
-\providecommand\HyField@AuxAddToFields[1]{}
-\providecommand\HyField@AuxAddToCoFields[2]{}
+\providecommand*\HyPL@Entry[1]{}
 \abx@aux@refcontext{nty/global//global/global}
 \providecommand\pbs@newkey[2]{}
 \providecommand\pbs@seq@push@cx[2]{}
@@ -24,12 +23,14 @@
 \pbs@at@end@dvi@check
 \providecommand\@anim@newkey[2]{}
 \pbs@newkey{pbs@last@page}{1}
+\HyPL@Entry{0<</P(1)>>}
 \@writefile{toc}{\boolfalse {citerequest}\boolfalse {citetracker}\boolfalse {pagetracker}\boolfalse {backtracker}\relax }
 \@writefile{lof}{\boolfalse {citerequest}\boolfalse {citetracker}\boolfalse {pagetracker}\boolfalse {backtracker}\relax }
 \@writefile{lot}{\boolfalse {citerequest}\boolfalse {citetracker}\boolfalse {pagetracker}\boolfalse {backtracker}\relax }
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {0}{0}{1}{1/1}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {1}{1}}}
 \pbs@newkey{pbs@last@page}{2}
+\HyPL@Entry{1<</P(2)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {0}{0}{2}{2/2}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {2}{2}}}
 \pbs@newkey{pbs@last@page}{3}
@@ -40,6 +41,7 @@
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {1}{0}{1}{3/3}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {3}{3}}}
 \pbs@newkey{pbs@last@page}{4}
+\HyPL@Entry{3<</P(3)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {1}{0}{2}{4/4}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {4}{4}}}
 \pbs@newkey{pbs@last@page}{5}
@@ -50,6 +52,7 @@
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {2}{0}{1}{5/5}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {5}{5}}}
 \pbs@newkey{pbs@last@page}{6}
+\HyPL@Entry{5<</P(4)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {2}{0}{2}{6/6}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {6}{6}}}
 \pbs@newkey{pbs@last@page}{7}
@@ -60,15 +63,19 @@
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {3}{0}{1}{7/7}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {7}{7}}}
 \pbs@newkey{pbs@last@page}{8}
+\HyPL@Entry{7<</P(5)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {3}{0}{2}{8/8}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {8}{8}}}
 \pbs@newkey{pbs@last@page}{9}
+\HyPL@Entry{8<</P(6)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {3}{0}{3}{9/9}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {9}{9}}}
 \pbs@newkey{pbs@last@page}{10}
+\HyPL@Entry{9<</P(7)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {3}{0}{4}{10/10}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {10}{10}}}
 \pbs@newkey{pbs@last@page}{11}
+\HyPL@Entry{10<</P(8)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {3}{0}{5}{11/11}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {11}{11}}}
 \pbs@newkey{pbs@last@page}{12}
@@ -79,31 +86,43 @@
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{1}{12/12}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {12}{12}}}
 \pbs@newkey{pbs@last@page}{13}
+\HyPL@Entry{12<</P(9)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{2}{13/13}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {13}{13}}}
 \pbs@newkey{pbs@last@page}{14}
+\HyPL@Entry{13<</P(10)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{3}{14/14}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {14}{14}}}
 \pbs@newkey{pbs@last@page}{15}
+\HyPL@Entry{14<</P(11)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{4}{15/15}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {15}{15}}}
 \pbs@newkey{pbs@last@page}{16}
+\HyPL@Entry{15<</P(12)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{5}{16/16}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {16}{16}}}
 \pbs@newkey{pbs@last@page}{17}
+\HyPL@Entry{16<</P(13)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{6}{17/17}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {17}{17}}}
 \pbs@newkey{pbs@last@page}{18}
+\HyPL@Entry{17<</P(14)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{7}{18/18}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {18}{18}}}
 \pbs@newkey{pbs@last@page}{19}
+\HyPL@Entry{18<</P(15)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{8}{19/19}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {19}{19}}}
 \pbs@newkey{pbs@last@page}{20}
+\HyPL@Entry{19<</P(16)>>}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{9}{20/20}{}{0}}}
 \@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {20}{20}}}
-\@writefile{nav}{\headcommand {\beamer@partpages {1}{20}}}
-\@writefile{nav}{\headcommand {\beamer@subsectionpages {12}{20}}}
-\@writefile{nav}{\headcommand {\beamer@sectionpages {12}{20}}}
-\@writefile{nav}{\headcommand {\beamer@documentpages {20}}}
-\@writefile{nav}{\headcommand {\gdef \inserttotalframenumber {16}}}
+\pbs@newkey{pbs@last@page}{21}
+\HyPL@Entry{20<</P(17)>>}
+\@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\slideentry {4}{0}{10}{21/21}{}{0}}}
+\@writefile{nav}{\defcounter {refsection}{0}\relax }\@writefile{nav}{\headcommand {\beamer@framepages {21}{21}}}
+\@writefile{nav}{\headcommand {\beamer@partpages {1}{21}}}
+\@writefile{nav}{\headcommand {\beamer@subsectionpages {12}{21}}}
+\@writefile{nav}{\headcommand {\beamer@sectionpages {12}{21}}}
+\@writefile{nav}{\headcommand {\beamer@documentpages {21}}}
+\@writefile{nav}{\headcommand {\gdef \inserttotalframenumber {17}}}

presentation.fdb_latexmk

@@ -1,14 +1,18 @@
 # Fdb version 3
-["biber presentation"] 1622053970 "presentation.bcf" "presentation.bbl" "presentation" 1622054934
-  "presentation.bcf" 1622054934 101149 070b8d437a9377c293336e898b92955c "pdflatex"
+["biber presentation"] 1622053970 "presentation.bcf" "presentation.bbl" "presentation" 1622215869
+  "presentation.bcf" 1622215868 101149 070b8d437a9377c293336e898b92955c "xelatex"
   (generated)
   "presentation.bbl"
   "presentation.blg"
-["pdflatex"] 1622054932 "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.tex" "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.pdf" "presentation" 1622054934
+["xdvipdfmx"] 1622215868 "presentation.xdv" "presentation.pdf" "presentation" 1622215869
+  "presentation.xdv" 1622215868 83180 efd01317930a6a5e607ba715b1b59842 "xelatex"
+  (generated)
+  "presentation.pdf"
+["xelatex"] 1622215867 "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.tex" "presentation.xdv" "presentation" 1622215869
   "/etc/texmf/web2c/texmf.cnf" 1610016767 475 c0e671620eb5563b2130f56340a5fde8 ""
-  "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.aux" 1622054934 8751 0d6bd76bc05777874b521ce0b8a06849 ""
-  "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.tex" 1622054929 7628 7429af4efa63f093a8f42cd337ee0681 ""
+  "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.tex" 1622215867 8106 028698cc3f9ea07f8318fa22ffddc32c ""
   "/usr/share/texlive/texmf-dist/fonts/map/fontname/texfonts.map" 1577235249 3524 cb3e574dea2d1052e39280babc910dc8 ""
+  "/usr/share/texlive/texmf-dist/fonts/tfm/adobe/zapfding/pzdr.tfm" 1136768653 1528 f853c4d1b4e0550255e02831fdc8496f ""
   "/usr/share/texlive/texmf-dist/fonts/tfm/public/amsfonts/cmextra/cmex7.tfm" 1246382020 1004 54797486969f23fa377b128694d548df ""
   "/usr/share/texlive/texmf-dist/fonts/tfm/public/amsfonts/cmextra/cmex8.tfm" 1246382020 988 bdf658c3bfc2d96d3c8b02cfc1c94c20 ""
   "/usr/share/texlive/texmf-dist/fonts/tfm/public/amsfonts/cmextra/cmex9.tfm" 1246382020 996 a18840b13b499c08ac2de96a99eda4bc ""
@@ -27,25 +31,10 @@
   "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmr6.tfm" 1136768653 1300 b62933e007d01cfd073f79b963c01526 ""
   "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmr8.tfm" 1136768653 1292 21c1c5bfeaebccffdb478fd231a0997d ""
   "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmr9.tfm" 1136768653 1292 6b21b9c2c7bebb38aa2273f7ca0fb3af ""
-  "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss10.tfm" 1136768653 1316 b636689f1933f24d1294acdf6041daaa ""
-  "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss12.tfm" 1136768653 1324 37b971caf729d7edd9cbb9f9b0ea76eb ""
-  "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss8.tfm" 1136768653 1296 d77f431d10d47c8ea2cc18cf45346274 ""
-  "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss9.tfm" 1136768653 1320 49357c421c0d469f88b867dd0c3d10e8 ""
-  "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmssbx10.tfm" 1136768653 1272 e2d13f0df30bf3ad990bb9d028e37f34 ""
-  "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmssi10.tfm" 1136768653 1520 ca2bb4b78ac9800bd686e30c6d19ef95 ""
   "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmsy10.tfm" 1136768653 1124 6c73e740cf17375f03eec0ee63599741 ""
   "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmsy6.tfm" 1136768653 1116 933a60c408fc0a863a92debe84b2d294 ""
   "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmsy8.tfm" 1136768653 1120 8b7d695260f3cff42e636090a8002094 ""
   "/usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmsy9.tfm" 1136768653 1116 25a7bf822c58caf309a702ef79f4afbb ""
-  "/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb" 1248133631 35752 024fb6c41858982481f6968b5fc26508 ""
-  "/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb" 1248133631 24457 5cbb7bdf209d5d1ce9892a9b80a307cc ""
-  "/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss8.pfb" 1248133631 24420 52dbb8e8aa0069a1b987309557f8d303 ""
-  "/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss9.pfb" 1248133631 24373 a91d375736817a75026663adcb2190c1 ""
-  "/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmssbx10.pfb" 1248133631 28902 2f5c04fd2884d1878057baa5aad22765 ""
-  "/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmssi10.pfb" 1248133631 25150 e0d09798d232ab9d00c5c0a8df6cc22d ""
-  "/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb" 1248133631 32569 5e5ddc8df908dea60932f3c484a54c0d ""
-  "/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/line10.pfb" 1248133631 11493 4f5ed183a47d3197cf8cd322325db6de ""
-  "/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii" 1461363279 71627 94eb9990bed73c364d7f53f960cc8c5b ""
   "/usr/share/texlive/texmf-dist/tex/generic/atbegshi/atbegshi.sty" 1575674566 24708 5584a51a7101caf7e6bbf1fc27d8f7b1 ""
   "/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty" 1576625341 40635 c40361e206be584d448876bba8a64a3b ""
   "/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty" 1576016050 33961 6b5c75130e435b2bfdb9f480a09a39f9 ""
@@ -124,7 +113,8 @@
   "/usr/share/texlive/texmf-dist/tex/generic/pgf/pgf.revision.tex" 1578520427 465 1f401ab1e7fc6cb7ede39e96c66531fd ""
   "/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgf.cfg" 1557692582 926 70ff613fabeb70f5d1673dc0c93987bd ""
   "/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-common-pdf.def" 1557692582 5546 3586827e6032c95512b2a6682d2979a3 ""
-  "/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-pdftex.def" 1562964315 12603 c02869ea216d842c29d52fae8738264e ""
+  "/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-dvipdfmx.def" 1576793519 18454 023f4e7d516adf61bdcf1f4095669326 ""
+  "/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-xetex.def" 1557692582 2761 31ad5f0cf752e31194dffd7ab20fe8f9 ""
   "/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys.code.tex" 1557692582 60269 e86bc0081af83a4ad47e4500ee09a2e4 ""
   "/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsysprotocol.code.tex" 1557692582 1896 82c274ff520f9e450ccea4e3ef4edc12 ""
   "/usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsyssoftpath.code.tex" 1557692582 7778 a25a32a10ca820357491d4c7b3ac02ea ""
@@ -135,6 +125,9 @@
   "/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common-lists.tex" 1557692582 7250 03b2b9fb5fa38e7ca5cc3c45860fb210 ""
   "/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-common.tex" 1576793519 28309 488ccc6c701bbdd1bf671f708757aa5c ""
   "/usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfutil-latex.def" 1562964315 6286 1bd76fc45da9929ab2a64f51cba3ab6f ""
+  "/usr/share/texlive/texmf-dist/tex/generic/stringenc/se-ascii-print.def" 1575152242 3257 357e44871446bf7a67d5b44617e25103 ""
+  "/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty" 1575152242 21514 b7557edcee22835ef6b03ede1802dad4 ""
+  "/usr/share/texlive/texmf-dist/tex/generic/unicode-data/UnicodeData.txt" 1584044743 1851767 85879f1976cc8eb739ee5585a93938e2 ""
   "/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty" 1576624663 7008 f92eaa0a3872ed622bbf538217cd2ab7 ""
   "/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex" 1417732693 19231 26434a5656c684f5ffb1f26f98006baa ""
   "/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex" 1403829539 7677 6f5ce7c1124cad7ec57d05b2562bd8fe ""
@@ -151,9 +144,12 @@
   "/usr/share/texlive/texmf-dist/tex/latex/animate/animate.sty" 1590786841 137337 0393ca4e2ef36f0a8ae3e2c55bb6f8da ""
   "/usr/share/texlive/texmf-dist/tex/latex/atveryend/atveryend.sty" 1576191570 19336 ce7ae9438967282886b3b036cfad1e4d ""
   "/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty" 1576625391 3935 57aa3c3e203a5c2effb4d2bd2efbc323 ""
+  "/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty" 1581632200 4947 0c2888dd88121ae675fc6e82213623ba ""
   "/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty" 1580683321 5159 892429808d9e0e2b3548aaefd9a06ed0 ""
   "/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty" 1580683321 5050 8933a39ad74377accd18991c5eb90c58 ""
   "/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo" 1580683321 8462 61fdf79debfc3dc4dab35ec6cf83fbf7 ""
+  "/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd" 1580683321 2431 b6cead9f069ed55f4fba0c637aa047b6 ""
+  "/usr/share/texlive/texmf-dist/tex/latex/base/tuenc.def" 1581632200 27440 69bf3d7c71626cc47b8ff9b7bbf0a3c2 ""
   "/usr/share/texlive/texmf-dist/tex/latex/bbding/bbding.sty" 1220829924 7225 9b2f9a70c30e88d8bba0d20fcca8b94e ""
   "/usr/share/texlive/texmf-dist/tex/latex/beamer/beamer.cls" 1595450012 11587 25dde1b1188ae0852bf3db42498cfd02 ""
   "/usr/share/texlive/texmf-dist/tex/latex/beamer/beamerbaseauxtemplates.sty" 1519256047 22666 933c376468a06913d7754fc13742473c ""
@@ -206,29 +202,34 @@
   "/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.sty" 1575845417 487938 f1cb8a63882acf2a1f1b144d32b407d6 ""
   "/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-compat.def" 1566680006 13136 44dd5518476508a5daf59afd6ef412e0 ""
   "/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-dm.def" 1575845417 32965 817e7da9f6f53e5072a4c2e8f56c4aa9 ""
+  "/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-unicode.def" 1567286390 3288 63bd983a05276add4a914f97aa57362e ""
   "/usr/share/texlive/texmf-dist/tex/latex/biblatex/cbx/numeric.cbx" 1510525977 4578 2d37f6a8c72f47aacef79870545a713d ""
   "/usr/share/texlive/texmf-dist/tex/latex/biblatex/lbx/english.lbx" 1566680006 38102 0107e531be1e2d63345edc3b268e7658 ""
-  "/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty" 1579991033 13886 d1306dcf79a944f6988e688c1785f9ce ""
   "/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty" 1594851515 45550 25b26e89acd0ac6952aa57218c49823c ""
+  "/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec-xetex.sty" 1582325645 163300 4d3d778e38973f06a2524732dbbc580f ""
+  "/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.cfg" 1532898934 549 c4adac819276241fea8eb79c5ab7b99e ""
+  "/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.sty" 1582325645 1655 a1ec6f2670a260de25415d37e9c60e97 ""
   "/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty" 1578002852 41601 9cf6c5257b1bc7af01a58859749dd37a ""
   "/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg" 1459978653 1213 620bba36b25224fa9b7e1ccb4ecb76fd ""
   "/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg" 1465944070 1224 978390e9c2234eab29404bc21b268d1e ""
-  "/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def" 1585083172 17448 c8e20d5f7e69b0cbecf82ab29daeebd9 ""
+  "/usr/share/texlive/texmf-dist/tex/latex/graphics-def/xetex.def" 1498427493 12707 672c620846df0fecf0a7a99fed83566d ""
   "/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty" 1580683321 16932 04729abe63b66ec59ea56edcd722b058 ""
   "/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty" 1580683321 9067 1b996612394a52e1efe89c8bfe8a5892 ""
   "/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty" 1580683321 2590 e3b24ff953e5b58d924f163d25380312 ""
   "/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty" 1580683321 3976 d7fa7d81d2870d509d25b17d0245e735 ""
   "/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty" 1580250785 17914 4c28a13fc3d975e6e81c9bea1d697276 ""
-  "/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def" 1589664343 50570 2e81797743231d9037b0cbe3436d74ba ""
+  "/usr/share/texlive/texmf-dist/tex/latex/hyperref/hxetex.def" 1589664343 45201 ad9e3883ace0ed5d7d4d33ab2432cdfc ""
   "/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty" 1589664343 236775 8ab18a05f69e6caef423fa59cb0af03b ""
   "/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty" 1579642962 13244 0070bcab7b5a88187847128d22faf4d8 ""
   "/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def" 1589664343 14134 c11767c54bd7ecab56984ee4e4e3158c ""
+  "/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def" 1589664343 122447 8dcff5c67ff7f0649f41dc4abc99887f ""
   "/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlfile.sty" 1595713669 17699 cf8998d21faf3e4ffa6fe6f79f9fc35f ""
   "/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty" 1575152344 22520 c4c2dab203104295e1e618be7e5c0f5b ""
-  "/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdfmode.def" 1593552530 24606 ecae4e851ce9ce4554d156050e5057f9 ""
+  "/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-xdvipdfmx.def" 1593552530 23471 d7927ec67cae4c632d9926c588a0178b ""
   "/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty" 1595022353 5693 2d88de5f9a5002f7cbc3733cb38ec03f ""
   "/usr/share/texlive/texmf-dist/tex/latex/l3packages/l3keys2e/l3keys2e.sty" 1589576990 4615 4ac5fc0da0d4c20aef3a345b8be411eb ""
-  "/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg" 1279039959 678 4792914a8f45be57bb98413425e4c7af ""
+  "/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse-generic.tex" 1589555814 80141 edbf9289c99ff37db17116af7a3a423f ""
+  "/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty" 1589576990 5914 5eaa255b13fb7a5e47ededc8ec098dba ""
   "/usr/share/texlive/texmf-dist/tex/latex/layouts/layouts.sty" 1252025554 103628 f0d6a23a8bf6863780e994d496016c62 ""
   "/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty" 1575499565 5766 13a9e8766c47f30327caf893ece86ac8 ""
   "/usr/share/texlive/texmf-dist/tex/latex/logreq/logreq.def" 1284153563 1620 fb1c32b818f2058eca187e5c41dfae77 ""
@@ -270,38 +271,36 @@
   "/usr/share/texlive/texmf-dist/tex/latex/zref/zref-base.sty" 1590703346 20632 508d53001f8de763d8dd867401d0c8b1 ""
   "/usr/share/texlive/texmf-dist/web2c/texmf.cnf" 1596975543 38841 5237427e4d3283e7b009b6a8b45dfdcd ""
   "/usr/share/texmf/web2c/texmf.cnf" 1596975543 38841 5237427e4d3283e7b009b6a8b45dfdcd ""
-  "/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map" 1610018135 4873311 71a69169e8f25b40365ee00977a83dfd ""
-  "/var/lib/texmf/web2c/pdftex/pdflatex.fmt" 1610018145 2445037 ec7c7ed5c1b8f3532a395444faf3824a ""
+  "/var/lib/texmf/web2c/xetex/xelatex.fmt" 1610018154 4781891 dc7cc5bfdee12bb84ef5df728e98b450 ""
   "Images/1200aphp.pdf" 1614248099 43221 6dd2708a46a9a48192573f05a13b7006 ""
-  "Images/TRD_all.pdf" 1622054392 5113 f25caf50125e3e129309e57b95210495 ""
+  "Images/RAG_ZFP36L2.pdf" 1622128336 79774 2460a4fa53ffd26ece00f96435738362 ""
+  "Images/RAG_ZFP36L2_mech.pdf" 1622129963 1794075 8c328d7398c7a2c8a7786d08bc57d654 ""
+  "Images/RAG_ZFP_TREC_ZFP.pdf" 1622215590 127226 13ccb49de20137b7047615a0fbba82c3 ""
+  "Images/TRD_all.pdf" 1622116708 38994 a4eb45393dd1a2a4bb7e947e499b7b03 ""
   "Images/alignement.pdf" 1614255713 27266 e04100bd28eec19f6051877f7a88454c ""
   "Images/assemblage.pdf" 1614701719 27648 ed0d81e4fd45d7413d38514055c748af ""
   "Images/fragmentation.pdf" 1614258226 2033408 4d27f242f7690042cfd535d9d041c149 ""
-  "Images/gviz_stacked/TRDD1_2.pdf" 1622043399 12668 80d9a90a31764780ea6461c3287aafea ""
-  "Images/gviz_stacked/TRDD2_bp.pdf" 1622043401 10674 9461445e3fec1c9be591b1503ece34d6 ""
-  "Images/gviz_stacked/TRDD3.pdf" 1622043405 8882 a39d02bb379b216f9e37f24398c4cd08 ""
-  "Images/gviz_stacked/TRDJ1.pdf" 1622043406 10603 542c0caff1e48283534bbbb08ad3c298 ""
-  "Images/gviz_stacked/TRDJ2.pdf" 1622043408 7408 e472e5f6f124a85408f4f349fc672737 ""
-  "Images/gviz_stacked/TRDV2.pdf" 1622043402 6913 7ad9d310b69c140c7e722a6603e62200 ""
+  "Images/gviz_stacked/TRD-LMO2.pdf" 1622118626 15617 d22d56e22ac2c57237e0dd5882b10c7d ""
+  "Images/gviz_stacked/TRD-TAL1.pdf" 1622119173 13852 8b2d45163dce563758390489db08b32e ""
+  "Images/gviz_stacked/TRD-TLX1.pdf" 1622118262 17942 f87d78f36382ef7c1c3bc77a488f207c ""
+  "Images/gviz_stacked/TRD-ZFP36L2.pdf" 1622121142 13966 cf3792c9b7ab94ff43d090a8d810b740 ""
   "Images/necker.pdf" 1614248206 204986 c9a96656b20298ffe81f928a5553a5b2 ""
   "Images/selection.pdf" 1614696825 35027 c5064437ccbd937e8b99637a24b4ebb0 ""
   "Images/translocation_10_14.pdf" 1613992812 2125570 7198b17bf53e357d3c137c7aeb94e30a ""
-  "presentation.aux" 1622054934 8751 0d6bd76bc05777874b521ce0b8a06849 "pdflatex"
+  "presentation.aux" 1622215868 9384 789cb72026e5a804d6870f5b74e43de9 "xelatex"
   "presentation.bbl" 1622053971 0 d41d8cd98f00b204e9800998ecf8427e "biber presentation"
-  "presentation.nav" 1622054934 4481 a8ef3615f45ee5a74368bff58514c536 "pdflatex"
-  "presentation.out" 1622054932 0 d41d8cd98f00b204e9800998ecf8427e "pdflatex"
-  "presentation.run.xml" 1622054934 2280 c532317f3d746748e7daa3cc724f88f0 "pdflatex"
-  "presentation.tex" 1622054929 7628 7429af4efa63f093a8f42cd337ee0681 ""
-  "presentation.toc" 1622054934 439 377fccb8a80fe935dae6064d90baa100 "pdflatex"
+  "presentation.nav" 1622215868 4644 809d580a032236f6a053c507948a0993 "xelatex"
+  "presentation.out" 1622215868 0 d41d8cd98f00b204e9800998ecf8427e "xelatex"
+  "presentation.run.xml" 1622215868 2315 d839dfb7da1f8b1b665578d8a1eb3d0e "xelatex"
+  "presentation.tex" 1622215867 8106 028698cc3f9ea07f8318fa22ffddc32c ""
+  "presentation.toc" 1622215868 439 377fccb8a80fe935dae6064d90baa100 "xelatex"
   (generated)
-  "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.pdf"
-  "presentation.log"
-  "presentation.aux"
-  "/home/thomas/Documents/Présentations/Translocations_Capture/presentation.log"
+  "presentation.bcf"
   "presentation.nav"
+  "presentation.xdv"
+  "presentation.log"
   "presentation.toc"
+  "presentation.out"
   "presentation.snm"
-  "presentation.bcf"
-  "presentation.pdf"
   "presentation.run.xml"
-  "presentation.out"
+  "presentation.aux"

presentation.fls

@@ -2,9 +2,9 @@ PWD /home/thomas/Documents/Présentations/Translocations_Capture
 INPUT /etc/texmf/web2c/texmf.cnf
 INPUT /usr/share/texmf/web2c/texmf.cnf
 INPUT /usr/share/texlive/texmf-dist/web2c/texmf.cnf
-INPUT /var/lib/texmf/web2c/pdftex/pdflatex.fmt
+INPUT /var/lib/texmf/web2c/xetex/xelatex.fmt
 INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.tex
-OUTPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.log
+OUTPUT presentation.log
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamer.cls
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamer.cls
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerbasemodes.sty
@@ -27,8 +27,6 @@ INPUT /usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/base/size11.clo
 INPUT /usr/share/texlive/texmf-dist/tex/latex/base/size11.clo
-INPUT /usr/share/texlive/texmf-dist/fonts/map/fontname/texfonts.map
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmr10.tfm
 INPUT /usr/share/texlive/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
@@ -39,8 +37,8 @@ INPUT /usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg
 INPUT /usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg
-INPUT /usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def
-INPUT /usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def
+INPUT /usr/share/texlive/texmf-dist/tex/latex/graphics-def/xetex.def
+INPUT /usr/share/texlive/texmf-dist/tex/latex/graphics-def/xetex.def
 INPUT /usr/share/texlive/texmf-dist/tex/latex/pgf/systemlayer/pgfsys.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/pgf/systemlayer/pgfsys.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/pgf/utilities/pgfrcs.sty
@@ -59,8 +57,9 @@ INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys.code.tex
 INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeys.code.tex
 INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/utilities/pgfkeysfiltered.code.tex
 INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgf.cfg
-INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-pdftex.def
-INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-pdftex.def
+INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-xetex.def
+INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-xetex.def
+INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-dvipdfmx.def
 INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsys-common-pdf.def
 INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsyssoftpath.code.tex
 INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/systemlayer/pgfsyssoftpath.code.tex
@@ -138,18 +137,27 @@ INPUT /usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/url/url.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/url/url.sty
+INPUT /usr/share/texlive/texmf-dist/fonts/map/fontname/texfonts.map
+INPUT /usr/share/texlive/texmf-dist/fonts/tfm/adobe/zapfding/pzdr.tfm
 INPUT /usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty
-INPUT /usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
-INPUT /usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
-INPUT /usr/share/texlive/texmf-dist/tex/latex/atveryend/atveryend.sty
-INPUT /usr/share/texlive/texmf-dist/tex/latex/atveryend/atveryend.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/hyperref/hxetex.def
+INPUT /usr/share/texlive/texmf-dist/tex/latex/hyperref/hxetex.def
+INPUT /usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def
+INPUT /usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def
+INPUT /usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty
+INPUT /usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/atveryend/atveryend.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/atveryend/atveryend.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty
+INPUT /usr/share/texlive/texmf-dist/tex/generic/stringenc/se-ascii-print.def
+INPUT /usr/share/texlive/texmf-dist/tex/generic/stringenc/se-ascii-print.def
+INPUT /usr/share/texlive/texmf-dist/tex/generic/stringenc/se-ascii-print.def
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerbaserequires.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerbaserequires.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerbasecompatibility.sty
@@ -222,7 +230,6 @@ INPUT /usr/share/texlive/texmf-dist/tex/latex/amscls/amsthm.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/amscls/amsthm.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerbasethemes.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerbasethemes.sty
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss10.tfm
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerthemedefault.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerthemedefault.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerfontthemedefault.sty
@@ -232,17 +239,10 @@ INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamercolorthemedefault.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerinnerthemedefault.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerinnerthemedefault.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericonbook.pdf
-OUTPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.pdf
-INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericonbook.pdf
-INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericonbook.20.pdf
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericonbook.20.pdf
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericonarticle.pdf
-INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericonarticle.pdf
-INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericonarticle.20.pdf
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericonarticle.20.pdf
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericononline.pdf
-INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericononline.pdf
-INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericononline.20.pdf
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamericononline.20.pdf
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerouterthemedefault.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerouterthemedefault.sty
@@ -260,6 +260,9 @@ INPUT /usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-dm.def
 INPUT /usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-dm.def
+INPUT /usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-unicode.def
+INPUT /usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-unicode.def
+INPUT /usr/share/texlive/texmf-dist/tex/generic/unicode-data/UnicodeData.txt
 INPUT /usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-compat.def
 INPUT /usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-compat.def
 INPUT /usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.def
@@ -324,6 +327,23 @@ INPUT /usr/share/texlive/texmf-dist/tex/generic/iftex/ifxetex.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/iftex/ifxetex.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-xdvipdfmx.def
+INPUT /usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-xdvipdfmx.def
+INPUT /usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse-generic.tex
+INPUT /usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse-generic.tex
+INPUT /usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec-xetex.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec-xetex.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/base/tuenc.def
+INPUT /usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
+INPUT /usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.cfg
+INPUT /usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.cfg
 INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibrarypositioning.code.tex
 INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibrarypositioning.code.tex
 INPUT /usr/share/texlive/texmf-dist/tex/generic/pgf/frontendlayer/tikz/libraries/tikzlibraryshapes.code.tex
@@ -376,10 +396,6 @@ INPUT /usr/share/texlive/texmf-dist/tex/latex/zref/zref-base.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/zref/zref-base.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/media9/pdfbase.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/media9/pdfbase.sty
-INPUT /usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
-INPUT /usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
-INPUT /usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdfmode.def
-INPUT /usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdfmode.def
 INPUT /usr/share/texlive/texmf-dist/tex/latex/l3packages/l3keys2e/l3keys2e.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/l3packages/l3keys2e/l3keys2e.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/ocgx2/ocgbase.sty
@@ -388,28 +404,24 @@ INPUT /usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerfontthemeprofessionalfonts.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/beamer/beamerfontthemeprofessionalfonts.sty
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.aux
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.aux
-OUTPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.aux
-INPUT /usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
-INPUT /usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
-INPUT /usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
-INPUT /usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
-INPUT /usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg
-INPUT /usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg
+INPUT presentation.aux
+INPUT presentation.aux
+OUTPUT presentation.aux
+INPUT /usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd
+INPUT /usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd
 INPUT /usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty
 INPUT /usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
 INPUT /usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.out
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.out
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.out
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.out
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.out
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.out
-OUTPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.out
+INPUT presentation.out
+INPUT presentation.out
+INPUT presentation.out
+INPUT presentation.out
+INPUT ./presentation.out
+INPUT ./presentation.out
+OUTPUT presentation.out
 INPUT /usr/share/texlive/texmf-dist/tex/latex/translator/translator-basic-dictionary-English.dict
 INPUT /usr/share/texlive/texmf-dist/tex/latex/translator/translator-basic-dictionary-English.dict
 INPUT /usr/share/texlive/texmf-dist/tex/latex/translator/translator-bibliography-dictionary-English.dict
@@ -424,29 +436,18 @@ INPUT /usr/share/texlive/texmf-dist/tex/latex/translator/translator-theorem-dict
 INPUT /usr/share/texlive/texmf-dist/tex/latex/translator/translator-theorem-dictionary-English.dict
 INPUT /usr/share/texlive/texmf-dist/tex/latex/biblatex/lbx/english.lbx
 INPUT /usr/share/texlive/texmf-dist/tex/latex/biblatex/lbx/english.lbx
-OUTPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.bcf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.bbl
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.bbl
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.bbl
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.nav
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.nav
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss8.tfm
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss8.tfm
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss12.tfm
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmssbx10.tfm
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss10.tfm
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/1200aphp.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/1200aphp.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/1200aphp.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/necker.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/necker.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/necker.pdf
-INPUT /var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.toc
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.toc
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss12.tfm
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmssbx10.tfm
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss8.tfm
+OUTPUT presentation.bcf
+INPUT presentation.bbl
+INPUT presentation.bbl
+INPUT presentation.bbl
+INPUT presentation.nav
+INPUT presentation.nav
+INPUT Images/1200aphp.pdf
+INPUT Images/necker.pdf
+OUTPUT presentation.xdv
+INPUT presentation.toc
+INPUT presentation.toc
+INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmr10.tfm
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmr8.tfm
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmr6.tfm
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmmi10.tfm
@@ -468,12 +469,7 @@ INPUT /usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/amsfonts/symbols/msbm10.tfm
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/amsfonts/symbols/msbm10.tfm
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/amsfonts/symbols/msbm7.tfm
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmssbx10.tfm
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmssi10.tfm
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/translocation_10_14.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/translocation_10_14.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/translocation_10_14.pdf
-INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmss9.tfm
+INPUT Images/translocation_10_14.pdf
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmr9.tfm
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmmi9.tfm
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/cm/cmsy9.tfm
@@ -483,52 +479,23 @@ INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/amsfonts/symbols/msam10.tfm
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/amsfonts/symbols/msam5.tfm
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/amsfonts/symbols/msbm10.tfm
 INPUT /usr/share/texlive/texmf-dist/fonts/tfm/public/amsfonts/symbols/msbm5.tfm
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/fragmentation.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/fragmentation.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/fragmentation.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/selection.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/selection.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/selection.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/alignement.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/alignement.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/alignement.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/assemblage.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/assemblage.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/assemblage.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/TRD_all.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/TRD_all.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/TRD_all.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDD1_2.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDD1_2.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDD1_2.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDD2_bp.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDD2_bp.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDD2_bp.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDD3.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDD3.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDD3.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDJ1.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDJ1.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDJ1.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDJ2.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDJ2.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDJ2.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDV2.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDV2.pdf
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/Images/gviz_stacked/TRDV2.pdf
-OUTPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.nav
-OUTPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.toc
-OUTPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.snm
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.aux
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.out
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.out
-INPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.run.xml
-OUTPUT /home/thomas/Documents/Présentations/Translocations_Capture/presentation.run.xml
-INPUT /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb
-INPUT /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb
-INPUT /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss8.pfb
-INPUT /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss9.pfb
-INPUT /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmssbx10.pfb
-INPUT /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmssi10.pfb
-INPUT /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb
-INPUT /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/line10.pfb
+INPUT Images/fragmentation.pdf
+INPUT Images/selection.pdf
+INPUT Images/alignement.pdf
+INPUT Images/assemblage.pdf
+INPUT Images/TRD_all.pdf
+INPUT Images/gviz_stacked/TRD-TLX1.pdf
+INPUT Images/gviz_stacked/TRD-LMO2.pdf
+INPUT Images/gviz_stacked/TRD-TAL1.pdf
+INPUT Images/gviz_stacked/TRD-ZFP36L2.pdf
+INPUT Images/RAG_ZFP36L2.pdf
+INPUT Images/RAG_ZFP36L2_mech.pdf
+INPUT Images/RAG_ZFP_TREC_ZFP.pdf
+OUTPUT presentation.nav
+OUTPUT presentation.toc
+OUTPUT presentation.snm
+INPUT presentation.aux
+INPUT ./presentation.out
+INPUT ./presentation.out
+INPUT presentation.run.xml
+OUTPUT presentation.run.xml

presentation.nav

@@ -102,8 +102,12 @@
 \headcommand {\slideentry {4}{0}{9}{20/20}{}{0}}
 \defcounter {refsection}{0}\relax 
 \headcommand {\beamer@framepages {20}{20}}
-\headcommand {\beamer@partpages {1}{20}}
-\headcommand {\beamer@subsectionpages {12}{20}}
-\headcommand {\beamer@sectionpages {12}{20}}
-\headcommand {\beamer@documentpages {20}}
-\headcommand {\gdef \inserttotalframenumber {16}}
+\defcounter {refsection}{0}\relax 
+\headcommand {\slideentry {4}{0}{10}{21/21}{}{0}}
+\defcounter {refsection}{0}\relax 
+\headcommand {\beamer@framepages {21}{21}}
+\headcommand {\beamer@partpages {1}{21}}
+\headcommand {\beamer@subsectionpages {12}{21}}
+\headcommand {\beamer@sectionpages {12}{21}}
+\headcommand {\beamer@documentpages {21}}
+\headcommand {\gdef \inserttotalframenumber {17}}

presentation.run.xml

@@ -51,6 +51,7 @@
     </requires>
     <requires type="static">
       <file>blx-dm.def</file>
+      <file>blx-unicode.def</file>
       <file>blx-compat.def</file>
       <file>biblatex.def</file>
       <file>standard.bbx</file>

presentation.tex

@@ -97,7 +97,7 @@
     \item \textit{TLX1} t(10;14)(q24;q11) EFS allongé
     \item \textit{TAL1} t(1;14)(p33;q11)
     \item \textit{LMO1} t(11;14)(p15;q11) 
-    \item \textit{LMO2} t(11;14)(p13;q11)g
+    \item \textit{LMO2} t(11;14)(p13;q11)
   \end{itemize}
     \begin{center}  
     \begin{figure}
@@ -183,77 +183,88 @@
 \end{frame}
 
 \begin{frame}
-  \frametitle{Translocations impliquant les locus TRA-D, TRG et TRB}
+  \frametitle{Translocations impliquant le locus TRD}
   \begin{center}
     \begin{figure}
         \centering
-        \includegraphics[height=\textheight-10pt]{Images/TRD_all.pdf}
+        \includegraphics[height=\textheight]{Images/TRD_all.pdf}
     \end{figure}
   \end{center}
 \end{frame}
 
 
 \begin{frame}
-  \frametitle{Translocations au locus TRD D1-D2}
+  \frametitle{Translocations impliquant le locus TRD avec pour partenaire TLX1}
   \begin{center}
     \begin{figure}
         \centering
-        \includegraphics[height=\textheight]{Images/gviz_stacked/TRDD1_2.pdf}
+        \includegraphics[height=\textheight-5pt]{Images/gviz_stacked/TRD-TLX1.pdf}
     \end{figure}
   \end{center}
 \end{frame}
 
 \begin{frame}
-  \frametitle{Zoom au locus TRD D1-D2}
+  \frametitle{Translocations impliquant le locus TRD avec pour partenaire LMO2}
   \begin{center}
     \begin{figure}
         \centering
-        \includegraphics[height=\textheight]{Images/gviz_stacked/TRDD2_bp.pdf}
+        \includegraphics[height=\textheight-5pt]{Images/gviz_stacked/TRD-LMO2.pdf}
     \end{figure}
   \end{center}
 \end{frame}
 
 \begin{frame}
-  \frametitle{Translocations au locus TRD D3}
+  \frametitle{Translocations impliquant le locus TRD avec pour partenaire TAL1}
   \begin{center}
     \begin{figure}
         \centering
-        \includegraphics[height=\textheight]{Images/gviz_stacked/TRDD3.pdf}
+        \includegraphics[height=\textheight-5pt]{Images/gviz_stacked/TRD-TAL1.pdf}
     \end{figure}
   \end{center}
 \end{frame}
 
 \begin{frame}
-  \frametitle{Translocations au locus TRD J1}
+  \frametitle{Translocations impliquant le locus TRD avec pour partenaire ZFP36L2}
   \begin{center}
     \begin{figure}
         \centering
-        \includegraphics[height=\textheight]{Images/gviz_stacked/TRDJ1.pdf}
+        \includegraphics[height=\textheight-5pt]{Images/gviz_stacked/TRD-ZFP36L2.pdf}
     \end{figure}
   \end{center}
 \end{frame}
 
 
 \begin{frame}
-  \frametitle{Translocations au locus TRD J2}
+  \frametitle{Translocations impliquant le locus TRD avec pour partenaire ZFP36L2}
   \begin{center}
     \begin{figure}
         \centering
-        \includegraphics[height=\textheight]{Images/gviz_stacked/TRDJ2.pdf}
+      \includegraphics[height=\textheight-5pt]{Images/RAG_ZFP36L2.pdf}
     \end{figure}
   \end{center}
 \end{frame}
 
 
 \begin{frame}
-  \frametitle{Translocations au locus TRD V2}
+  \frametitle{Translocations impliquant le locus TRD avec pour partenaire ZFP36L2}
   \begin{center}
     \begin{figure}
         \centering
-        \includegraphics[height=\textheight]{Images/gviz_stacked/TRDV2.pdf}
+      \includegraphics[height=\textheight-5pt]{Images/RAG_ZFP36L2_mech.pdf}
     \end{figure}
   \end{center}
 \end{frame}
+
+\begin{frame}
+  \frametitle{Reconstruction du neo-chromosome ZFP36L2-TREC-ZFP36L2}
+  \begin{center}
+    \begin{figure}
+        \centering
+      \includegraphics[height=\textheight-22pt]{Images/RAG_ZFP_TREC_ZFP.pdf}
+    \end{figure}
+  \end{center}
+\end{frame}
+
 \end{document}
 
 \begin{frame}