m

dist/index.js

@@ -147,6 +147,7 @@ runName, libName, outputDir, onData, options) {
             samblasterCmd = __spreadArray(__spreadArray([], samblasterCmd, true), ['-s', splitterFile], false);
             retObj = __assign(__assign({}, retObj), { splitterFile: splitterFile });
         }
+        console.log(options);
         if (options === null || options === void 0 ? void 0 : options.output_unmapped) {
             var unmappedFile = path_1.default.join(outputDir, "bwa_mem_unmapped_on_".concat(refName, ".fq"));
             console.log('Unmapped reads file path: ', unmappedFile);

index.ts

@@ -108,6 +108,8 @@ const asyncBwaMem = (
         samblasterCmd = [...samblasterCmd, '-s', splitterFile]
         retObj = {...retObj, splitterFile}
       }
+      console.log(options);
+      
 
       if(options?.output_unmapped) {
         const unmappedFile   = path.join(outputDir, `bwa_mem_unmapped_on_${refName}.fq`)