m

dist/index.js

@@ -166,7 +166,7 @@ runName, libName, outputDir, onData, options) {
                     _a.sent();
                     _a.label = 2;
                 case 2:
-                    console.log(options);
+                    console.log(options, samblasterCmd);
                     return [4 /*yield*/, async_exec(bwa, __spreadArray(__spreadArray(['mem',
                             '-t', threads,
                             '-R', "\"@RG\\tPL:Illumina\\tID:".concat(+(new Date), "\\tSM:").concat(runName, "\\tLB:").concat(libName, "\""), refPath,

index.ts

@@ -124,7 +124,7 @@ const asyncBwaMem = (
           await async_exec(bwa, ['index', refPath], (message: string) => onData('[BWA-INDEX] ' + message))
         }
 
-        console.log(options);
+        console.log(options, samblasterCmd);
         
 
         const code = await async_exec(