m

src/lib.rs

@@ -407,11 +407,11 @@ impl Sam {
         } else { 
             let len = ref_range.len(); 
             ref_range.start = ref_pos as usize;
-            ref_range.end = ref_pos as usize + len - 1;
+            ref_range.end = ref_pos as usize + len - 2;
             query_range.end = query_range.end;
         }
 
-        let ref_sequence = fa.get_sequence(&ref_name, ref_range.start.clone(), ref_range.end.clone());
+        let ref_sequence = fa.get_sequence(&ref_name, ref_range.start.clone(), ref_range.end.clone() + 1);
         
         Sam {query_name, query_range, ref_name, ref_pos, ref_range, sequence, ref_sequence, ref_cigar}
     }