m

src/lib.rs

@@ -648,9 +648,8 @@ impl NeoContig {
         }
         res
     }
-    
+
     pub fn get_fasta(&self) -> String {
-        let res = String::new();
         let fa_lines = self.contig.chars()
         .collect::<Vec<char>>()
         .chunks(60)
@@ -659,9 +658,10 @@ impl NeoContig {
         .join("\n");
 
         let mut name = String::new();
-        for s in self.alignments {
+        for s in &self.alignments {
             // contig:[pos-pos]
-            name = format!("{}{}:{}-{}_", name, s.ref_name, s.ref_range.0, s.ref_range.0 - 1);
+            name = format!("{}{}:{}-{}_", name, s.ref_name,
+            s.ref_range.start, s.ref_range.end - 1);
         }
         format!(">{}\n{}", name, fa_lines)
     }