m

src/lib.rs

@@ -408,12 +408,12 @@ impl Sam {
         if is_reverse(flag) {
             let len = ref_range.len();
             ref_range.end = (ref_pos as usize) - 1;
-            ref_range.start = ref_pos as usize + len - 2;
+            ref_range.start = ref_pos as usize + len - 1;
             query_range.end = query_range.end + 1;
         } else {
             let len = ref_range.len(); 
             ref_range.start = ref_pos as usize;
-            ref_range.end = (ref_pos as usize + len) - 2;
+            ref_range.end = (ref_pos as usize + len) - 1;
             query_range.end = query_range.end - 1;
         }
 
@@ -551,7 +551,7 @@ impl NeoContig {
             lines.push(contig);
         }
 
-        // I f more than one reference seque,ce
+        // If more than one reference sequence
         if self.alignments.len() > 1 {
             
             let ref_spaces = " ".repeat(self.alignments[1].query_range.start).as_bytes().to_vec();