m

src/lib.rs

@@ -442,7 +442,7 @@ impl NeoContig {
         self.alignments = alignments;
     }
 
-    pub fn make_aln (&self) -> Vec<Vec<u8>> {
+    pub fn make_aln (&self, print_sequences: Option<bool>) -> Vec<Vec<u8>> {
         println!("== {} ============", self.name);
         let contig_len = self.contig.len();
         let mut lines: Vec<Vec<u8>> = Vec::new();
@@ -490,20 +490,22 @@ impl NeoContig {
         lines.push(contig.clone());
 
         // Sequences
-        if self.stretch.len() > 0 {
-            let decal = -self.stretch[0].1; // first have to be leftmost
-            for (node_index, offset) in self.stretch.iter() {
-                let seq = self.sequences.get(&node_index).unwrap();
-                let name = self.sequences_names.get(&node_index).unwrap();
-                let mut l = format!("{}{}", " ".repeat((offset + decal) as usize).to_string(), seq).as_bytes().to_vec();
-                let mut ll = format!("{} - {}", " ".repeat(contig_len - l.len()).to_string(), name).as_bytes().to_vec();
-                l.append(&mut ll);
-                lines.push(l);
+        if let Some(show_seq) = print_sequences {
+            if show_seq && self.stretch.len() > 0 {
+                let decal = -self.stretch[0].1; // first have to be leftmost
+                for (node_index, offset) in self.stretch.iter() {
+                    let seq = self.sequences.get(&node_index).unwrap();
+                    let name = self.sequences_names.get(&node_index).unwrap();
+                    let mut l = format!("{}{}", " ".repeat((offset + decal) as usize).to_string(), seq).as_bytes().to_vec();
+                    let mut ll = format!("{} - {}", " ".repeat(contig_len - l.len()).to_string(), name).as_bytes().to_vec();
+                    l.append(&mut ll);
+                    lines.push(l);
+                }
             }
+            // Contig
+            lines.push(contig);
         }
-
-        // Contig
-        lines.push(contig);
+        
 
         // other ref
         if self.alignments.len() > 1 {
@@ -538,14 +540,13 @@ impl NeoContig {
             .collect();
             l.append(&mut filtered_ref);
             lines.push(l);
-
         }
 
         lines
     }
 
     pub fn print_stretch(&self) {
-        for line in self.make_aln() {
+        for line in self.make_aln(Some(false)) {
             println!("{}", String::from_utf8_lossy(&line));
         }
     }