m

src/lib.rs

@@ -1,3 +1,26 @@
+// MIT License
+
+// Copyright (c) [2022] [Thomas Stimlé]
+
+// Permission is hereby granted, free of charge, to any person obtaining a copy
+// of this software and associated documentation files (the "Software"), to deal
+// in the Software without restriction, including without limitation the rights
+// to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+// copies of the Software, and to permit persons to whom the Software is
+// furnished to do so, subject to the following conditions:
+
+// The above copyright notice and this permission notice shall be included in all
+// copies or substantial portions of the Software.
+
+// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+// AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+// OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+// SOFTWARE.
+
+
 use std::{ops::Range, collections::{HashMap, HashSet}};
 use petgraph::{graph::{Graph, NodeIndex, EdgeIndex}, Undirected};
 use kseq::parse_path;
@@ -609,7 +632,7 @@ impl NeoContig {
             let mut added_nt = String::new();
             if self.alignments[0].query_range.end < self.alignments[1].query_range.start {
                 added_nt = self.alignments[0].sequence[
-                    self.alignments[0].query_range.end..(self.alignments[1].query_range.start - 1)
+                    self.alignments[0].query_range.end..(self.alignments[1].query_range.start)
                 ].to_string();
                 added_nt.push(';');
             }