m

src/lib.rs

@@ -396,7 +396,7 @@ impl Sam {
         } else {
             let len = ref_range.len(); 
             ref_range.start = ref_pos as usize;
-            ref_range.end = (ref_pos as usize + len);
+            ref_range.end = (ref_pos as usize + len) - 2;
         }
 
         let ref_sequence = fa.get_sequence(&ref_name, ref_range.start.clone(), ref_range.end.clone());
@@ -592,7 +592,7 @@ impl Fasta {
             let fv = self.fa.view(chr_index, end, start + 1).expect("Cannot get .fa view");
             revcomp(&fv.to_string().to_uppercase())
         } else {
-            let fv = self.fa.view(chr_index, start - 1, end - 2).expect("Cannot get .fa view");
+            let fv = self.fa.view(chr_index, start - 1, end).expect("Cannot get .fa view");
             fv.to_string().to_uppercase()
         }
     }