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@@ -413,7 +413,7 @@ impl Sam {
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} else {
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let len = ref_range.len();
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ref_range.start = ref_pos as usize;
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- ref_range.end = (ref_pos as usize + len) ;
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+ ref_range.end = (ref_pos as usize + len) - 1;
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// query_range.end = query_range.end;
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}
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@@ -682,7 +682,7 @@ impl Fasta {
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let fv = self.fa.view(chr_index, end, start + 1).expect("Cannot get .fa view");
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revcomp(&fv.to_string().to_uppercase())
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} else {
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- let fv = self.fa.view(chr_index, start - 1, end).expect("Cannot get .fa view");
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+ let fv = self.fa.view(chr_index, start, end).expect("Cannot get .fa view");
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fv.to_string().to_uppercase()
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}
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}
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