m

index.js

@@ -15,6 +15,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.denovoAssemblage = void 0;
 const child_process_1 = require("child_process");
 const os_1 = __importDefault(require("os"));
 const path_1 = __importDefault(require("path"));
@@ -78,15 +79,17 @@ const denovoAssemblage = (reads, rnames, spadesPath) => {
         resolve(rsltDir);
     }));
 };
-(() => __awaiter(void 0, void 0, void 0, function* () {
-    const spadesPath = '/home/thomas/NGS/tools/SPAdes-3.15.0-Linux/bin/spades.py';
-    const reads2 = '/home/thomas/Documents/Programmes/ttest/71-mer.fa';
-    const rnames = ['33530080_3', '30971394_3', '77190111_3', '89825138_3',
-        '22481866_3', '111937620_4', '24308941_6', '27758147_3',
-        '87242990_14', '41688638_4', '114699822_3', '48573844_4',
-        '91080996_3', '99644261_3', '77207124_3', '28986564_10',
-        '84400117_4', '10884880_6', '116082011_12', '1739367_3',
-        '13550404_3', '68446023_10', '50560660_3', '9046992_3'];
-    console.log(yield denovoAssemblage(reads2, rnames, spadesPath));
-}))();
-//export { denovoAssemblage }
+exports.denovoAssemblage = denovoAssemblage;
+/*
+(async()=>{
+    const spadesPath = '/home/thomas/NGS/tools/SPAdes-3.15.0-Linux/bin/spades.py'
+    const reads2 = '/home/thomas/Documents/Programmes/ttest/71-mer.fa'
+    const rnames = ['33530080_3',   '30971394_3',   '77190111_3',   '89825138_3',
+      '22481866_3',   '111937620_4',  '24308941_6',   '27758147_3',
+      '87242990_14',  '41688638_4',   '114699822_3',  '48573844_4',
+      '91080996_3',   '99644261_3',   '77207124_3',   '28986564_10',
+      '84400117_4',   '10884880_6',   '116082011_12', '1739367_3',
+      '13550404_3',   '68446023_10',  '50560660_3',   '9046992_3']
+    console.log(await denovoAssemblage(reads2, rnames, spadesPath));
+})()
+*/