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@@ -47,7 +47,7 @@ impl fmt::Display for ContigsRefRes {
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}
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}
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-fn mapping_to_string(mapping: &Mapping) -> String {
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+pub fn mapping_to_string(mapping: &Mapping) -> String {
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let uk = "UNKNOWN".to_string();
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format!(
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"{}:{}-{}({}:{}-{})",
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@@ -253,6 +253,13 @@ impl Genome {
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info!("{}:{}", k, v.contigs.len());
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}
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}
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+ pub fn chromosome(&self, chromosome: &str) -> Option<Vec<ContigsRefRes>> {
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+ if let Some(chr) = self.chromosomes.get(chromosome) {
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+ Some(chr.contigs.clone())
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+ } else {
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+ None
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+ }
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+ }
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}
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#[derive(Debug, Clone)]
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pub struct Chromosome {
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