chromosome

src/lib.rs

@@ -1,5 +1,5 @@
 use anyhow::Result;
-use std::{fmt, collections::{HashMap, VecDeque, hash_map::Iter}};
+use std::{fmt, collections::{HashMap, VecDeque}};
 use log::info;
 use minimap2::Mapping;
 
@@ -159,7 +159,7 @@ impl Genome {
             chromosomes: HashMap::new(),
         }
     }
-    pub fn iter(&self) -> Iter<'_, String, Chromosome>{
+    pub fn iter(&self) -> std::collections::hash_map::Iter<'_, String, Chromosome>{
         self.chromosomes.iter()
     }
     pub fn add_contig(&mut self, id: String, mappings: Vec<Mapping>) -> Result<()> {
@@ -269,6 +269,12 @@ pub struct Chromosome {
     contigs: Vec<ContigsRefRes>,
 }
 
+impl Chromosome {
+    pub fn iter(&self) -> std::slice::Iter<'_, ContigsRefRes> {
+        self.contigs.iter()
+    }
+}
+
 fn group_mappings(mappings: &mut Vec<Mapping>) -> Result<Vec<Vec<Mapping>>> {
     // sort alignments by query_start
     mappings.sort_by(|a, b| a.query_start.cmp(&b.query_start));