test

src/lib.rs

@@ -503,6 +503,7 @@ impl Genome {
         aligner: impl Fn(String) -> Result<Vec<Mapping>>,
     ) -> Result<()> {
         let mappings = aligner(String::from_utf8(sequence.to_vec())?)?;
+        println!("{mappings:?}");
         self.add_contig(name, mappings, None, String::from_utf8(sequence.to_vec())?)?;
         Ok(())
     }
@@ -995,12 +996,12 @@ mod tests {
     use dashmap::DashSet;
     use indicatif::MultiProgress;
     use indicatif_log_bridge::LogWrapper;
-    use libVariant::{in_out::dict_reader::read_dict, utils::new_pg_speed, variants::Variant};
+    use libVariant::{in_out::dict_reader::read_dict, variants::Variant};
 
     use super::*;
     use crate::{
         genomic_graph::GenomicGraph,
-        phase::{merge_phases, variants_phasing, write_phases_bed, HeteroVar, Phase},
+        phase::{variants_phasing, write_phases_bed},
     };
 
     fn init() {
@@ -1039,11 +1040,11 @@ mod tests {
     fn test_graph() -> Result<()> {
         init();
 
-        let case = "MERY";
-        let chrom = vec!["chr7"];
+        let case = "SPINATO";
+        let chrom = vec!["chr5", "chr11", "chr14"];
         info!("This record will be captured by `cargo test`");
 
-        let dir = format!("/data/longreads_basic_pipe/{case}/diag/neo_contigs");
+        let dir = format!("/data/longreads_basic_pipe/{case}/diag/asm_contigs");
 
         // Load from fasta in dir.
         let genome = Genome::from_contigs_sequences(&dir)?;