[package]
name = "desc_seq_lib"
version = "0.1.0"
edition = "2021"

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
env_logger = "^0.10.1"
test-env-log = "0.2.8"
minimap2 = { git = "https://github.com/jguhlin/minimap2-rs", features = ["simde"] }
aligner_client = { git = "https://git.t0m4.fr/Thomas/aligner_client.git"}
rust-htslib = "0.46.0"
anyhow = "1.0.75"
log = "0.4.19"
rand = "0.8.4"
uuid = { version = "1.6.1", features = ["serde", "v4"] }
seq_io = "0.3.2"
noodles-fasta = "0.34.0"
noodles-vcf = "0.51.0"
crossbeam = "0.8.4"
pileup = { git = "https://git.t0m4.fr/Thomas/pileup.git" }
libVariant = { git = "https://git.t0m4.fr/Thomas/libVariant.git" }
crossbeam-channel = "0.5.12"
test-log = "0.2.15"
num-format = "0.4.4"
petgraph = "0.6.4"
indicatif = {version = "0.17.8", features = ["rayon"]}
indicatif-log-bridge = "0.2.2"
rayon = "1.8.0"
dashmap = "5.5.3"