[package]
name = "desc_seq_lib"
version = "0.1.0"
edition = "2021"

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
env_logger = "^0.11.5"
test-env-log = "0.2.8"
minimap2 = { git = "https://github.com/jguhlin/minimap2-rs", features = ["simde"] }
aligner_client = { git = "https://git.t0m4.fr/Thomas/aligner_client.git"}
rust-htslib = "0.47.0"
anyhow = "1.0.86"
log = "0.4.22"
rand = "0.8.5"
uuid = { version = "1.10.0", features = ["serde", "v4"] }
seq_io = "0.3.2"
noodles-fasta = "0.42.0"
noodles-vcf = "0.62.0"
crossbeam = "0.8.4"
crossbeam-channel = "0.5.13"
test-log = "0.2.16"
num-format = "0.4.4"
petgraph = "0.6.5"
indicatif = {version = "0.17.8", features = ["rayon"]}
indicatif-log-bridge = "0.2.3"
rayon = "1.10.0"
dashmap = "6.0.1"
duct = "0.13.7"
pandora_lib_variants = {git = "https://git.t0m4.fr/Thomas/pandora_lib_variants.git"}
pandora_lib_pileup = { git = "https://git.t0m4.fr/Thomas/pandora_lib_pileup.git" }
glob = "0.3.1"