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@@ -4,7 +4,7 @@ use clap::Parser;
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#[derive(Parser, Debug)]
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#[command(author, version, about, long_about = None)]
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struct Args {
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- /// Name of the person to greet
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+ /// Name of the perso≥n to greet
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#[arg(short, long)]
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bam: String,
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@@ -18,7 +18,10 @@ fn main() {
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let bam = bam::Reader::from_path(&args.bam).unwrap();
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let header = bam::Header::from_template(bam.header());
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- bam.fetch(("CHROMOSOME_I", 0, 20)).unwrap();
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+ // /Turbine-pool/LAL-T_ChIP/BAM/525/merged.bam
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+ // chr1:47239205-47239396
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+
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+ bam.fetch(("chr1", 47239204, 47239399)).unwrap();
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// pileup over all covered sites
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for p in bam.pileup() {
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