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- [package]
- name = "libVariant"
- version = "0.1.0"
- edition = "2021"
- # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
- [dependencies]
- log = "^0.4.20"
- env_logger = "^0.10.1"
- clap = { version = "^4.3.16", features = ["derive"] }
- anyhow = "^1.0.75"
- indicatif = {version = "0.17.8", features = ["rayon"]}
- indicatif-log-bridge = "0.2.2"
- num-integer = "0.1.46"
- # kdam = "0.5.1"
- # pbr = "1.1.1"
- serde = { version = "^1.0.188", features = ["derive"] }
- confy = "0.5.1"
- hashbrown = { version = "0.14.3", features = ["rayon", "serde"] }
- serde_json = "1.0"
- bgzip = "0.3.1"
- rust-lapper = "1.1.0"
- csv = "1.3.0"
- statrs = "0.16.0"
- rust-htslib = "0.44.1"
- uuid = { version = "1.6.1", features = ["serde", "v4"] }
- prettytable-rs = "^0.10"
- noodles-core = "0.14.0"
- noodles-gff = "0.27.0"
- noodles-bgzf = "0.26.0"
- noodles-csi = "0.30.0"
- noodles-fasta = "0.33.0"
- noodles-sam = "0.49.0"
- noodles-bam = "0.52.0"
- noodles-vcf = "0.49.0"
- noodles-tabix = "0.36.0"
- rayon = "1.8.0"
- serde_rusqlite = "0.34.0"
- dashmap = { version = "5.5.3", features = ["rayon", "serde"] }
- crossbeam-deque = "0.8.5"
- trc = "1.2.4"
- pot = "=3.0.0"
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