ncbiParse/index.ts

'use strict'

import path from "path"
import Piscina from "piscina"


(async()=>{
    const getEsearch = new Piscina({
        filename: path.resolve(__dirname, './workers/esearch.js')
    })

    // const orders = 
    // [
    //     {
    //         params: {
    //             db: 'nuccore',
    //             term: 'NM_001143971.2'
    //         },
    //         xpath: 'string((//Id)[1])'
    //     },
    //     {
    //         params: {
    //             db: 'gene',
    //             term: 'NM_001143971.2'
    //         },
    //         xpath: 'string((//Id)[1])'
    //     },
    // ]
    // const results = await Promise.all(orders.map(e => getEsearch.run(e)))
    // console.log(results);

    const orders =
    [
        // {
        //     params: {
        //         db: 'nuccore',
        //         id: '1674999401',
        //         rettype: 'gb',
        //         retmode: 'text'
        //     },
        //     xpath: '/',
        //     endpoint: 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi'
        // },
        // {
        //     db: 'nuccore',
        //     id: '1674999401',
        //     rettype: 'native',
        //     retmode: 'xml',
        //     endpoint: 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi'
        // },
        {
            db: 'pubmed',
            id: '19393038',
            retmode: 'xml',
            endpoint: 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi',
            query: `**.AbstractText`
        },
    ]
    const results = await Promise.all(orders.map(e => getEsearch.run(e)))
    console.log(results);
})()