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@@ -88,7 +88,8 @@ impl Blast {
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}
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pub fn to_mapping(self) -> Option<Vec<Mapping>> {
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- self.results.map(|res| res.iter().map(Mapping::from).collect())
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+ self.results
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+ .map(|res| res.iter().map(Mapping::from).collect())
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}
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pub fn to_json(self) -> anyhow::Result<String> {
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@@ -216,6 +217,18 @@ impl BlastResult {
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..s
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}
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}
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+
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+ pub fn to_bed(&self) -> String {
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+ let info = format!("{}:{}-{}", self.subject_id, self.s_start, self.s_end);
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+ [
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+ self.query_id.to_string(),
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+ self.q_start.to_string(),
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+ self.q_end.to_string(),
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+ info,
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+ ]
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+ .join("\t")
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+ .to_string()
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+ }
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}
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#[derive(Debug)]
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