skip ids

src/cases.rs

@@ -29,7 +29,8 @@ pub struct Cases {
 }
 
 impl Cases {
-    pub fn load(mp: MultiProgress) -> Result<Self> {
+    pub fn load(mp: MultiProgress, skip_ids: Option<Vec<String>>) -> Result<Self> {
+        let ids_to_skip = skip_ids.unwrap_or(vec![]);
         let config = Config::get()?;
         let mut diag_bams = HashMap::new();
         for entry in glob(&config.diag_bam_glob).context("Failed to read glob pattern")? {
@@ -70,6 +71,9 @@ impl Cases {
         let mut cases = Vec::new();
         let diff_snp = DiffSnp::init(&config.commun_snp)?;
         for (id, diag_bam) in diag_bams {
+            if ids_to_skip.contains(&id) {
+                continue;
+            }
             if let Some(mrd_bam) = mrd_bams.get(&id) {
                 // verify if both samples match commun snps
                 let diff = diff_snp.diff_prop(diag_bam.path.to_str().unwrap(), mrd_bam.path.to_str().unwrap())?;