only ids

Cargo.lock

@@ -149,15 +149,15 @@ checksum = "349f9b6a179ed607305526ca489b34ad0a41aed5f7980fa90eb03160b69598fb"
 
 [[package]]
 name = "bitflags"
-version = "2.5.0"
+version = "2.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cf4b9d6a944f767f8e5e0db018570623c85f3d925ac718db4e06d0187adb21c1"
+checksum = "b048fb63fd8b5923fc5aa7b340d8e156aec7ec02f0c78fa8a6ddc2613f6f71de"
 
 [[package]]
 name = "bytemuck"
-version = "1.16.0"
+version = "1.16.1"
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-checksum = "78834c15cb5d5efe3452d58b1e8ba890dd62d21907f867f383358198e56ebca5"
+checksum = "b236fc92302c97ed75b38da1f4917b5cdda4984745740f153a5d3059e48d725e"
 
 [[package]]
 name = "byteorder"
@@ -184,9 +184,9 @@ dependencies = [
 
 [[package]]
 name = "cc"
-version = "1.0.99"
+version = "1.0.100"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "96c51067fd44124faa7f870b4b1c969379ad32b2ba805aa959430ceaa384f695"
+checksum = "c891175c3fb232128f48de6590095e59198bbeb8620c310be349bfc3afd12c7b"
 dependencies = [
  "jobserver",
  "libc",
@@ -230,7 +230,7 @@ dependencies = [
  "heck 0.5.0",
  "proc-macro2",
  "quote",
- "syn 2.0.66",
+ "syn 2.0.68",
 ]
 
 [[package]]
@@ -459,17 +459,6 @@ dependencies = [
  "winapi",
 ]
 
-[[package]]
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-version = "0.2.4"
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- "proc-macro2",
- "quote",
- "syn 2.0.66",
-]
-
 [[package]]
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 version = "0.5.2"
@@ -650,134 +639,14 @@ version = "2.1.0"
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- "zerovec",
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- "proc-macro2",
- "quote",
- "syn 2.0.66",
-]
-
 [[package]]
 name = "idna"
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+version = "0.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4716a3a0933a1d01c2f72450e89596eb51dd34ef3c211ccd875acdf1f8fe47ed"
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 dependencies = [
- "icu_normalizer",
- "icu_properties",
- "smallvec",
- "utf8_iter",
+ "unicode-bidi",
+ "unicode-normalization",
 ]
 
 [[package]]
@@ -872,9 +741,9 @@ dependencies = [
 
 [[package]]
 name = "lazy_static"
-version = "1.4.0"
+version = "1.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646"
+checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe"
 
 [[package]]
 name = "lexical-core"
@@ -991,12 +860,6 @@ version = "1.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "bfae20f6b19ad527b550c223fddc3077a547fc70cda94b9b566575423fd303ee"
 
-[[package]]
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-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "643cb0b8d4fcc284004d5fd0d67ccf61dfffadb7f75e1e71bc420f4688a3a704"
-
 [[package]]
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 version = "0.4.12"
@@ -1351,7 +1214,7 @@ dependencies = [
 [[package]]
 name = "pandora_lib_variants"
 version = "0.1.0"
-source = "git+https://git.t0m4.fr/Thomas/pandora_lib_variants.git#a292d174d5ae550884f234518831cae16716e0b2"
+source = "git+https://git.t0m4.fr/Thomas/pandora_lib_variants.git#9e347cad1565abe9ef35550f035db628a59064a4"
 dependencies = [
  "anyhow",
  "bgzip",
@@ -1458,9 +1321,9 @@ dependencies = [
 
 [[package]]
 name = "proc-macro2"
-version = "1.0.85"
+version = "1.0.86"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "22244ce15aa966053a896d1accb3a6e68469b97c7f33f284b99f0d576879fc23"
+checksum = "5e719e8df665df0d1c8fbfd238015744736151d4445ec0836b8e628aae103b77"
 dependencies = [
  "unicode-ident",
 ]
@@ -1720,14 +1583,14 @@ checksum = "500cbc0ebeb6f46627f50f3f5811ccf6bf00643be300b4c3eabc0ef55dc5b5ba"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.66",
+ "syn 2.0.68",
 ]
 
 [[package]]
 name = "serde_json"
-version = "1.0.117"
+version = "1.0.118"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "455182ea6142b14f93f4bc5320a2b31c1f266b66a4a5c858b013302a5d8cbfc3"
+checksum = "d947f6b3163d8857ea16c4fa0dd4840d52f3041039a85decd46867eb1abef2e4"
 dependencies = [
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  "ryu",
@@ -1804,7 +1667,7 @@ dependencies = [
  "proc-macro2",
  "quote",
  "rustversion",
- "syn 2.0.66",
+ "syn 2.0.68",
 ]
 
 [[package]]
@@ -1820,26 +1683,15 @@ dependencies = [
 
 [[package]]
 name = "syn"
-version = "2.0.66"
+version = "2.0.68"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c42f3f41a2de00b01c0aaad383c5a45241efc8b2d1eda5661812fda5f3cdcff5"
+checksum = "901fa70d88b9d6c98022e23b4136f9f3e54e4662c3bc1bd1d84a42a9a0f0c1e9"
 dependencies = [
  "proc-macro2",
  "quote",
  "unicode-ident",
 ]
 
-[[package]]
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-version = "0.13.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
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-dependencies = [
- "proc-macro2",
- "quote",
- "syn 2.0.66",
-]
-
 [[package]]
 name = "term"
 version = "0.7.0"
@@ -1877,19 +1729,24 @@ checksum = "46c3384250002a6d5af4d114f2845d37b57521033f30d5c3f46c4d70e1197533"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.66",
+ "syn 2.0.68",
 ]
 
 [[package]]
-name = "tinystr"
-version = "0.7.6"
+name = "tinyvec"
+version = "1.6.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9117f5d4db391c1cf6927e7bea3db74b9a1c1add8f7eda9ffd5364f40f57b82f"
+checksum = "c55115c6fbe2d2bef26eb09ad74bde02d8255476fc0c7b515ef09fbb35742d82"
 dependencies = [
- "displaydoc",
- "zerovec",
+ "tinyvec_macros",
 ]
 
+[[package]]
+name = "tinyvec_macros"
+version = "0.1.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "1f3ccbac311fea05f86f61904b462b55fb3df8837a366dfc601a0161d0532f20"
+
 [[package]]
 name = "toml"
 version = "0.5.11"
@@ -1915,12 +1772,27 @@ version = "1.17.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "42ff0bf0c66b8238c6f3b578df37d0b7848e55df8577b3f74f92a69acceeb825"
 
+[[package]]
+name = "unicode-bidi"
+version = "0.3.15"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "08f95100a766bf4f8f28f90d77e0a5461bbdb219042e7679bebe79004fed8d75"
+
 [[package]]
 name = "unicode-ident"
 version = "1.0.12"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "3354b9ac3fae1ff6755cb6db53683adb661634f67557942dea4facebec0fee4b"
 
+[[package]]
+name = "unicode-normalization"
+version = "0.1.23"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a56d1686db2308d901306f92a263857ef59ea39678a5458e7cb17f01415101f5"
+dependencies = [
+ "tinyvec",
+]
+
 [[package]]
 name = "unicode-width"
 version = "0.1.13"
@@ -1929,27 +1801,15 @@ checksum = "0336d538f7abc86d282a4189614dfaa90810dfc2c6f6427eaf88e16311dd225d"
 
 [[package]]
 name = "url"
-version = "2.5.1"
+version = "2.5.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f7c25da092f0a868cdf09e8674cd3b7ef3a7d92a24253e663a2fb85e2496de56"
+checksum = "22784dbdf76fdde8af1aeda5622b546b422b6fc585325248a2bf9f5e41e94d6c"
 dependencies = [
  "form_urlencoded",
  "idna",
  "percent-encoding",
 ]
 
-[[package]]
-name = "utf16_iter"
-version = "1.0.5"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c8232dd3cdaed5356e0f716d285e4b40b932ac434100fe9b7e0e8e935b9e6246"
-
-[[package]]
-name = "utf8_iter"
-version = "1.0.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b6c140620e7ffbb22c2dee59cafe6084a59b5ffc27a8859a5f0d494b5d52b6be"
-
 [[package]]
 name = "utf8parse"
 version = "0.2.2"
@@ -1958,9 +1818,9 @@ checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821"
 
 [[package]]
 name = "uuid"
-version = "1.8.0"
+version = "1.9.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a183cf7feeba97b4dd1c0d46788634f6221d87fa961b305bed08c851829efcc0"
+checksum = "5de17fd2f7da591098415cff336e12965a28061ddace43b59cb3c430179c9439"
 dependencies = [
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  "serde",
@@ -2098,42 +1958,6 @@ version = "0.52.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "bec47e5bfd1bff0eeaf6d8b485cc1074891a197ab4225d504cb7a1ab88b02bf0"
 
-[[package]]
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-version = "1.0.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d1890f4022759daae28ed4fe62859b1236caebfc61ede2f63ed4e695f3f6d936"
-
-[[package]]
-name = "writeable"
-version = "0.5.5"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e9df38ee2d2c3c5948ea468a8406ff0db0b29ae1ffde1bcf20ef305bcc95c51"
-
-[[package]]
-name = "yoke"
-version = "0.7.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6c5b1314b079b0930c31e3af543d8ee1757b1951ae1e1565ec704403a7240ca5"
-dependencies = [
- "serde",
- "stable_deref_trait",
- "yoke-derive",
- "zerofrom",
-]
-
-[[package]]
-name = "yoke-derive"
-version = "0.7.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
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-dependencies = [
- "proc-macro2",
- "quote",
- "syn 2.0.66",
- "synstructure",
-]
-
 [[package]]
 name = "zerocopy"
 version = "0.7.34"
@@ -2151,48 +1975,5 @@ checksum = "15e934569e47891f7d9411f1a451d947a60e000ab3bd24fbb970f000387d1b3b"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.66",
-]
-
-[[package]]
-name = "zerofrom"
-version = "0.1.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "91ec111ce797d0e0784a1116d0ddcdbea84322cd79e5d5ad173daeba4f93ab55"
-dependencies = [
- "zerofrom-derive",
-]
-
-[[package]]
-name = "zerofrom-derive"
-version = "0.1.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0ea7b4a3637ea8669cedf0f1fd5c286a17f3de97b8dd5a70a6c167a1730e63a5"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn 2.0.66",
- "synstructure",
-]
-
-[[package]]
-name = "zerovec"
-version = "0.10.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bb2cc8827d6c0994478a15c53f374f46fbd41bea663d809b14744bc42e6b109c"
-dependencies = [
- "yoke",
- "zerofrom",
- "zerovec-derive",
-]
-
-[[package]]
-name = "zerovec-derive"
-version = "0.10.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "97cf56601ee5052b4417d90c8755c6683473c926039908196cf35d99f893ebe7"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn 2.0.66",
+ "syn 2.0.68",
 ]

src/cases.rs

@@ -32,6 +32,7 @@ impl Cases {
     pub fn load(
         mp: MultiProgress,
         skip_ids: Option<Vec<String>>,
+        only_ids: Option<Vec<String>>,
         check_snp: bool,
         load_variants: bool,
     ) -> Result<Self> {
@@ -84,6 +85,11 @@ impl Cases {
             if ids_to_skip.contains(&id) {
                 continue;
             }
+            if let Some(only_ids) = &only_ids {
+                if !only_ids.contains(&id) {
+                    continue;
+                }
+            }
             if let Some(mrd_bam) = mrd_bams.get(&id) {
                 // verify if both samples match commun snps
                 if let Some(diff_snp) = &diff_snp_opt {

src/lib.rs

@@ -17,7 +17,7 @@ mod tests {
         let multi = MultiProgress::new();
         LogWrapper::new(multi.clone(), logger).try_init().unwrap();
 
-        let cases = cases::Cases::load(multi, None)?;
+        let cases = cases::Cases::load(multi, None, false, true)?;
         cases.cases.iter().for_each(|c| println!("{}\t{:?}", c.id, c.n_variants()));
 
         Ok(())