utoipa

Cargo.lock

@@ -184,9 +184,9 @@ dependencies = [
 
 [[package]]
 name = "cc"
-version = "1.0.100"
+version = "1.0.104"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c891175c3fb232128f48de6590095e59198bbeb8620c310be349bfc3afd12c7b"
+checksum = "74b6a57f98764a267ff415d50a25e6e166f3831a5071af4995296ea97d210490"
 dependencies = [
  "jobserver",
  "libc",
@@ -201,9 +201,9 @@ checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
 
 [[package]]
 name = "clap"
-version = "4.5.7"
+version = "4.5.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5db83dced34638ad474f39f250d7fea9598bdd239eaced1bdf45d597da0f433f"
+checksum = "84b3edb18336f4df585bc9aa31dd99c036dfa5dc5e9a2939a722a188f3a8970d"
 dependencies = [
  "clap_builder",
  "clap_derive",
@@ -211,9 +211,9 @@ dependencies = [
 
 [[package]]
 name = "clap_builder"
-version = "4.5.7"
+version = "4.5.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f7e204572485eb3fbf28f871612191521df159bc3e15a9f5064c66dba3a8c05f"
+checksum = "c1c09dd5ada6c6c78075d6fd0da3f90d8080651e2d6cc8eb2f1aaa4034ced708"
 dependencies = [
  "anstream",
  "anstyle",
@@ -223,9 +223,9 @@ dependencies = [
 
 [[package]]
 name = "clap_derive"
-version = "4.5.5"
+version = "4.5.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c780290ccf4fb26629baa7a1081e68ced113f1d3ec302fa5948f1c381ebf06c6"
+checksum = "2bac35c6dafb060fd4d275d9a4ffae97917c13a6327903a8be2153cd964f7085"
 dependencies = [
  "heck 0.5.0",
  "proc-macro2",
@@ -373,9 +373,9 @@ dependencies = [
 
 [[package]]
 name = "curl-sys"
-version = "0.4.72+curl-8.6.0"
+version = "0.4.73+curl-8.8.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "29cbdc8314c447d11e8fd156dcdd031d9e02a7a976163e396b548c03153bc9ea"
+checksum = "450ab250ecf17227c39afb9a2dd9261dc0035cb80f2612472fc0c4aac2dcb84d"
 dependencies = [
  "cc",
  "libc",
@@ -470,9 +470,9 @@ dependencies = [
 
 [[package]]
 name = "either"
-version = "1.12.0"
+version = "1.13.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3dca9240753cf90908d7e4aac30f630662b02aebaa1b58a3cadabdb23385b58b"
+checksum = "60b1af1c220855b6ceac025d3f6ecdd2b7c4894bfe9cd9bda4fbb4bc7c0d4cf0"
 
 [[package]]
 name = "encode_unicode"
@@ -663,6 +663,7 @@ checksum = "168fb715dda47215e360912c096649d23d58bf392ac62f73919e831745e40f26"
 dependencies = [
  "equivalent",
  "hashbrown",
+ "serde",
 ]
 
 [[package]]
@@ -872,9 +873,9 @@ dependencies = [
 
 [[package]]
 name = "log"
-version = "0.4.21"
+version = "0.4.22"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "90ed8c1e510134f979dbc4f070f87d4313098b704861a105fe34231c70a3901c"
+checksum = "a7a70ba024b9dc04c27ea2f0c0548feb474ec5c54bba33a7f72f873a39d07b24"
 
 [[package]]
 name = "lzma-sys"
@@ -1178,6 +1179,7 @@ dependencies = [
  "rayon",
  "rust-htslib 0.46.0",
  "serde",
+ "utoipa",
 ]
 
 [[package]]
@@ -1214,7 +1216,7 @@ dependencies = [
 [[package]]
 name = "pandora_lib_variants"
 version = "0.1.0"
-source = "git+https://git.t0m4.fr/Thomas/pandora_lib_variants.git#9e347cad1565abe9ef35550f035db628a59064a4"
+source = "git+https://git.t0m4.fr/Thomas/pandora_lib_variants.git#8d895325ff7b8ba60abdd77ba1859fb6640ad209"
 dependencies = [
  "anyhow",
  "bgzip",
@@ -1248,6 +1250,7 @@ dependencies = [
  "serde_rusqlite",
  "statrs",
  "trc",
+ "utoipa",
  "uuid",
 ]
 
@@ -1319,6 +1322,30 @@ dependencies = [
  "unicode-width",
 ]
 
+[[package]]
+name = "proc-macro-error"
+version = "1.0.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "da25490ff9892aab3fcf7c36f08cfb902dd3e71ca0f9f9517bea02a73a5ce38c"
+dependencies = [
+ "proc-macro-error-attr",
+ "proc-macro2",
+ "quote",
+ "syn 1.0.109",
+ "version_check",
+]
+
+[[package]]
+name = "proc-macro-error-attr"
+version = "1.0.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a1be40180e52ecc98ad80b184934baf3d0d29f979574e439af5a55274b35f869"
+dependencies = [
+ "proc-macro2",
+ "quote",
+ "version_check",
+]
+
 [[package]]
 name = "proc-macro2"
 version = "1.0.86"
@@ -1588,9 +1615,9 @@ dependencies = [
 
 [[package]]
 name = "serde_json"
-version = "1.0.118"
+version = "1.0.120"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d947f6b3163d8857ea16c4fa0dd4840d52f3041039a85decd46867eb1abef2e4"
+checksum = "4e0d21c9a8cae1235ad58a00c11cb40d4b1e5c784f1ef2c537876ed6ffd8b7c5"
 dependencies = [
  "itoa",
  "ryu",
@@ -1816,6 +1843,30 @@ version = "0.2.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821"
 
+[[package]]
+name = "utoipa"
+version = "4.2.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "c5afb1a60e207dca502682537fefcfd9921e71d0b83e9576060f09abc6efab23"
+dependencies = [
+ "indexmap",
+ "serde",
+ "serde_json",
+ "utoipa-gen",
+]
+
+[[package]]
+name = "utoipa-gen"
+version = "4.3.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "7bf0e16c02bc4bf5322ab65f10ab1149bdbcaa782cba66dc7057370a3f8190be"
+dependencies = [
+ "proc-macro-error",
+ "proc-macro2",
+ "quote",
+ "syn 2.0.68",
+]
+
 [[package]]
 name = "uuid"
 version = "1.9.1"
@@ -1846,9 +1897,9 @@ checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423"
 
 [[package]]
 name = "wide"
-version = "0.7.24"
+version = "0.7.25"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8a040b111774ab63a19ef46bbc149398ab372b4ccdcfd719e9814dbd7dfd76c8"
+checksum = "2caba658a80831539b30698ae9862a72db6697dfdd7151e46920f5f2755c3ce2"
 dependencies = [
  "bytemuck",
  "safe_arch",
@@ -1896,9 +1947,9 @@ dependencies = [
 
 [[package]]
 name = "windows-targets"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6f0713a46559409d202e70e28227288446bf7841d3211583a4b53e3f6d96e7eb"
+checksum = "9b724f72796e036ab90c1021d4780d4d3d648aca59e491e6b98e725b84e99973"
 dependencies = [
  "windows_aarch64_gnullvm",
  "windows_aarch64_msvc",
@@ -1912,66 +1963,66 @@ dependencies = [
 
 [[package]]
 name = "windows_aarch64_gnullvm"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7088eed71e8b8dda258ecc8bac5fb1153c5cffaf2578fc8ff5d61e23578d3263"
+checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3"
 
 [[package]]
 name = "windows_aarch64_msvc"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9985fd1504e250c615ca5f281c3f7a6da76213ebd5ccc9561496568a2752afb6"
+checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469"
 
 [[package]]
 name = "windows_i686_gnu"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "88ba073cf16d5372720ec942a8ccbf61626074c6d4dd2e745299726ce8b89670"
+checksum = "8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b"
 
 [[package]]
 name = "windows_i686_gnullvm"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "87f4261229030a858f36b459e748ae97545d6f1ec60e5e0d6a3d32e0dc232ee9"
+checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66"
 
 [[package]]
 name = "windows_i686_msvc"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "db3c2bf3d13d5b658be73463284eaf12830ac9a26a90c717b7f771dfe97487bf"
+checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66"
 
 [[package]]
 name = "windows_x86_64_gnu"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4e4246f76bdeff09eb48875a0fd3e2af6aada79d409d33011886d3e1581517d9"
+checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78"
 
 [[package]]
 name = "windows_x86_64_gnullvm"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "852298e482cd67c356ddd9570386e2862b5673c85bd5f88df9ab6802b334c596"
+checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
 
 [[package]]
 name = "windows_x86_64_msvc"
-version = "0.52.5"
+version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bec47e5bfd1bff0eeaf6d8b485cc1074891a197ab4225d504cb7a1ab88b02bf0"
+checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
 
 [[package]]
 name = "zerocopy"
-version = "0.7.34"
+version = "0.7.35"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ae87e3fcd617500e5d106f0380cf7b77f3c6092aae37191433159dda23cfb087"
+checksum = "1b9b4fd18abc82b8136838da5d50bae7bdea537c574d8dc1a34ed098d6c166f0"
 dependencies = [
  "zerocopy-derive",
 ]
 
 [[package]]
 name = "zerocopy-derive"
-version = "0.7.34"
+version = "0.7.35"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "15e934569e47891f7d9411f1a451d947a60e000ab3bd24fbb970f000387d1b3b"
+checksum = "fa4f8080344d4671fb4e831a13ad1e68092748387dfc4f55e356242fae12ce3e"
 dependencies = [
  "proc-macro2",
  "quote",

Cargo.toml

@@ -23,3 +23,4 @@ itertools = "0.12.1"
 indicatif-log-bridge = "0.2.2"
 rand = "0.8.5"
 rayon = "1.10.0"
+utoipa = "4.2.3"

src/cases.rs

@@ -14,6 +14,7 @@ use rand::seq::IteratorRandom;
 use rayon::prelude::*;
 use rust_htslib::bam;
 use serde::Serialize;
+use utoipa::ToSchema;
 use std::{
     collections::HashMap,
     io::{BufRead, BufReader},
@@ -216,7 +217,7 @@ impl Case {
     }
 }
 
-#[derive(Debug, Clone, Serialize)]
+#[derive(Debug, Clone, Serialize, ToSchema)]
 pub struct CaseStats {
     id: String,
     stats: Vec<Stat>,