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@@ -31,7 +31,7 @@ fn compress_string(input: &str) -> anyhow::Result<String> {
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}
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// To add more track cf.: https://github.com/igvteam/igv.js/wiki/Tracks-2.0
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-
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+// https://igv.org/doc/igvjs/#tracks/Tracks/
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#[derive(Debug, Serialize)]
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pub struct ReferenceValues {
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pub id: String,
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@@ -347,17 +347,17 @@ mod tests {
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.with_reference(ReferenceValues::default())
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.with_locus_at(("chr1", 47_098_189), 33)?
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.add_track(Track::Bam(BamTrack::new(
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- "ROBIN diag",
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- "/data/longreads_basic_pipe/ROBIN/diag/ROBIN_diag_hs1.bam",
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+ "VIEL diag",
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+ "/data/longreads_basic_pipe/VIEL/diag/VIEL_diag_hs1.bam",
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)))?
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.add_track(Track::Bam(BamTrack::new(
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- "ROBIN mrd",
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- "/data/longreads_basic_pipe/ROBIN/mrd/ROBIN_mrd_hs1.bam",
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- )))?
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- .add_track(Track::Variants(VariantsTrack::new(
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- "/data/longreads_basic_pipe/ROBIN/diag/ROBIN_loh.vcf.gz",
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- "LOH",
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+ "VIEL mrd",
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+ "/data/longreads_basic_pipe/VIEL/mrd/VIEL_mrd_hs1.bam",
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)))?
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+ // .add_track(Track::Variants(VariantsTrack::new(
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+ // "/data/longreads_basic_pipe/VIEL/diag/VIEL_loh.vcf.gz",
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+ // "LOH",
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+ // )))?
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.add_track(Track::Genes(GenesTrack::new(
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"/data/ref/hs1/chm13v2.0_RefSeq_Liftoff_v5.1_sorted.gff3.gz",
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)))?;
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