pandora_lib_igv/src/tracks/mod.rs

use serde_json::{Value, json};

use crate::tracks::{bam::BamTrack, bed::BedTrack, genes::GenesTrack, variants::VariantsTrack};

pub mod bam;
pub mod bed;
pub mod genes;
pub mod variants;

/// Supported IGV track variants for session JSON.
#[derive(Debug)]
pub enum Track {
    /// BAM alignment track.
    Bam(BamTrack),
    /// Gene annotation track (GFF3).
    Genes(GenesTrack),
    /// Variant track (VCF).
    Variants(VariantsTrack),
    /// BED annotation track.
    Bed(BedTrack),
}

impl Track {
    /// Serialize the track variant to a JSON object suitable for igv.js.
    pub fn to_json(&self) -> Value {
        match self {
            Track::Bam(bam) => json!(bam),
            Track::Genes(genes) => json!(genes),
            Track::Variants(variants) => json!(variants),
            Track::Bed(bed) => json!(bed),
        }
    }

    /// Set the track display order.
    pub fn order(&mut self, order: i16) {
        match self {
            Track::Bam(track) => track.order = order,
            Track::Genes(track) => track.order = order,
            Track::Variants(track) => track.order = order,
            Track::Bed(track) => track.order = order,
        }
    }
}