up

Cargo.lock

@@ -1,6 +1,6 @@
 # This file is automatically @generated by Cargo.
 # It is not intended for manual editing.
-version = 3
+version = 4
 
 [[package]]
 name = "adler"
@@ -68,9 +68,9 @@ dependencies = [
 
 [[package]]
 name = "anyhow"
-version = "1.0.86"
+version = "1.0.95"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b3d1d046238990b9cf5bcde22a3fb3584ee5cf65fb2765f454ed428c7a0063da"
+checksum = "34ac096ce696dc2fcabef30516bb13c0a68a11d30131d3df6f04711467681b04"
 
 [[package]]
 name = "autocfg"
@@ -106,7 +106,7 @@ dependencies = [
  "regex",
  "rustc-hash",
  "shlex",
- "syn 2.0.72",
+ "syn",
 ]
 
 [[package]]
@@ -119,7 +119,7 @@ dependencies = [
  "lazy_static",
  "regex",
  "strum_macros",
- "thiserror",
+ "thiserror 1.0.63",
 ]
 
 [[package]]
@@ -257,9 +257,9 @@ checksum = "22ec99545bb0ed0ea7bb9b8e1e9122ea386ff8a48c0922e43f36d45ab09e0e80"
 
 [[package]]
 name = "curl-sys"
-version = "0.4.74+curl-8.9.0"
+version = "0.4.78+curl-8.11.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8af10b986114528fcdc4b63b6f5f021b7057618411046a4de2ba0f0149a097bf"
+checksum = "8eec768341c5c7789611ae51cf6c459099f22e64a5d5d0ce4892434e33821eaf"
 dependencies = [
  "cc",
  "libc",
@@ -278,24 +278,24 @@ checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9"
 
 [[package]]
 name = "derive-new"
-version = "0.5.9"
+version = "0.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3418329ca0ad70234b9735dc4ceed10af4df60eff9c8e7b06cb5e520d92c3535"
+checksum = "d150dea618e920167e5973d70ae6ece4385b7164e0d799fe7c122dd0a5d912ad"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 1.0.109",
+ "syn",
 ]
 
 [[package]]
 name = "derive-new"
-version = "0.6.0"
+version = "0.7.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d150dea618e920167e5973d70ae6ece4385b7164e0d799fe7c122dd0a5d912ad"
+checksum = "2cdc8d50f426189eef89dac62fabfa0abb27d5cc008f25bf4156a0203325becc"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.72",
+ "syn",
 ]
 
 [[package]]
@@ -325,9 +325,9 @@ dependencies = [
 
 [[package]]
 name = "env_logger"
-version = "0.11.5"
+version = "0.11.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e13fa619b91fb2381732789fc5de83b45675e882f66623b7d8cb4f643017018d"
+checksum = "dcaee3d8e3cfc3fd92428d477bc97fc29ec8716d180c0d74c643bb26166660e0"
 dependencies = [
  "anstream",
  "anstyle",
@@ -395,9 +395,9 @@ checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea"
 
 [[package]]
 name = "hts-sys"
-version = "2.1.4"
+version = "2.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e9f348d14cb4e50444e39fcd6b00302fe2ed2bc88094142f6278391d349a386d"
+checksum = "e38d7f1c121cd22aa214cb4dadd4277dc5447391eac518b899b29ba6356fbbb2"
 dependencies = [
  "bindgen",
  "bzip2-sys",
@@ -568,9 +568,9 @@ dependencies = [
 
 [[package]]
 name = "noodles-bgzf"
-version = "0.32.0"
+version = "0.34.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2b2fba0f4a64cc897d9396d730a0c444d148daed7de31ad5904ecc673178fc9d"
+checksum = "3e624384981e5847bfd6a026f157c45d687187c30ee21b8c435310267c7aa7ab"
 dependencies = [
  "byteorder",
  "bytes",
@@ -589,9 +589,9 @@ dependencies = [
 
 [[package]]
 name = "noodles-fasta"
-version = "0.41.0"
+version = "0.46.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d7a1662ac3ace299515c982a322e378bbeb4c1bd90fb098d823ef0f3a6abcc00"
+checksum = "16862f9e1bf1ad825a1fab6fc29da9e950dd477cfcd0cb1a2b14fa8ee1a72575"
 dependencies = [
  "bstr",
  "bytes",
@@ -660,9 +660,9 @@ checksum = "d231b230927b5e4ad203db57bbcbee2802f6bce620b1e4a9024a07d94e2907ec"
 
 [[package]]
 name = "proc-macro2"
-version = "1.0.86"
+version = "1.0.92"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5e719e8df665df0d1c8fbfd238015744736151d4445ec0836b8e628aae103b77"
+checksum = "37d3544b3f2748c54e147655edb5025752e2303145b5aefb3c3ea2c78b973bb0"
 dependencies = [
  "unicode-ident",
 ]
@@ -733,14 +733,14 @@ checksum = "7a66a03ae7c801facd77a29370b4faec201768915ac14a721ba36f20bc9c209b"
 
 [[package]]
 name = "rust-htslib"
-version = "0.47.0"
+version = "0.49.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "41f1796800e73ebb282c6fc5c03f1fe160e867e01114a58a7e115ee3c1d02482"
+checksum = "115ae57b89deb942275566eca8c31da053d8df0d8bda12e50c4c4aa994877068"
 dependencies = [
  "bio-types",
  "byteorder",
  "custom_derive",
- "derive-new 0.5.9",
+ "derive-new 0.7.0",
  "hts-sys",
  "ieee754",
  "lazy_static",
@@ -749,7 +749,7 @@ dependencies = [
  "linear-map",
  "newtype_derive",
  "regex",
- "thiserror",
+ "thiserror 2.0.9",
  "url",
 ]
 
@@ -797,7 +797,7 @@ checksum = "692d6f5ac90220161d6774db30c662202721e64aed9058d2c394f451261420c1"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.72",
+ "syn",
 ]
 
 [[package]]
@@ -816,14 +816,14 @@ dependencies = [
  "proc-macro2",
  "quote",
  "rustversion",
- "syn 2.0.72",
+ "syn",
 ]
 
 [[package]]
 name = "syn"
-version = "1.0.109"
+version = "2.0.95"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "72b64191b275b66ffe2469e8af2c1cfe3bafa67b529ead792a6d0160888b4237"
+checksum = "46f71c0377baf4ef1cc3e3402ded576dccc315800fbc62dfc7fe04b009773b4a"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -831,23 +831,21 @@ dependencies = [
 ]
 
 [[package]]
-name = "syn"
-version = "2.0.72"
+name = "thiserror"
+version = "1.0.63"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dc4b9b9bf2add8093d3f2c0204471e951b2285580335de42f9d2534f3ae7a8af"
+checksum = "c0342370b38b6a11b6cc11d6a805569958d54cfa061a29969c3b5ce2ea405724"
 dependencies = [
- "proc-macro2",
- "quote",
- "unicode-ident",
+ "thiserror-impl 1.0.63",
 ]
 
 [[package]]
 name = "thiserror"
-version = "1.0.63"
+version = "2.0.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c0342370b38b6a11b6cc11d6a805569958d54cfa061a29969c3b5ce2ea405724"
+checksum = "f072643fd0190df67a8bab670c20ef5d8737177d6ac6b2e9a236cb096206b2cc"
 dependencies = [
- "thiserror-impl",
+ "thiserror-impl 2.0.9",
 ]
 
 [[package]]
@@ -858,7 +856,18 @@ checksum = "a4558b58466b9ad7ca0f102865eccc95938dca1a74a856f2b57b6629050da261"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.72",
+ "syn",
+]
+
+[[package]]
+name = "thiserror-impl"
+version = "2.0.9"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "7b50fa271071aae2e6ee85f842e2e28ba8cd2c5fb67f11fcb1fd70b276f9e7d4"
+dependencies = [
+ "proc-macro2",
+ "quote",
+ "syn",
 ]
 
 [[package]]
@@ -916,9 +925,9 @@ checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821"
 
 [[package]]
 name = "uuid"
-version = "1.10.0"
+version = "1.11.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "81dfa00651efa65069b0b6b651f4aaa31ba9e3c3ce0137aaad053604ee7e0314"
+checksum = "f8c5f0a0af699448548ad1a2fbf920fb4bee257eae39953ba95cb84891a0446a"
 dependencies = [
  "getrandom",
 ]

Cargo.toml

@@ -6,11 +6,11 @@ edition = "2021"
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
 
 [dependencies]
-rust-htslib = "0.47.0"
-anyhow = "^1.0.86"
+rust-htslib = "0.49.0"
+anyhow = "^1.0.95"
 average = "0.15.1"
 rayon = "1.10.0"
 log = "^0.4.22"
-env_logger = "^0.11.3"
-uuid = { version = "1.10.0", features = ["v4"] }
-noodles-fasta = "0.41.0"
+env_logger = "^0.11.6"
+uuid = { version = "1.11.0", features = ["v4"] }
+noodles-fasta = "0.46.0"