pub

src/lib.rs

@@ -4,34 +4,33 @@ use std::{
 };
 
 use arrow::array::{
-    ArrayRef, Float64Array, Int32Array, StringArray, TimestampMillisecondArray, UInt16Array,
+    ArrayRef, Int16Array, StringArray, TimestampMillisecondArray, UInt16Array,
 };
-use arrow::array::{Int16Array, UInt32Array};
 use arrow::{array::RecordBatch, ipc::reader::FileReader};
 use chrono::TimeZone;
 use chrono::{DateTime, Utc};
 use podders::{root_as_footer, ContentType};
 
 #[derive(Debug, Clone)]
-struct Pod5Info {
-    acquisition_id: String,
-    acquisition_start_time: DateTime<Utc>,
-    adc_max: i16,
-    adc_min: i16,
-    experiment_name: String,
-    flow_cell_id: String,
-    flow_cell_product_code: String,
-    protocol_name: String,
-    protocol_run_id: String,
-    protocol_start_time: DateTime<Utc>,
-    sample_id: String,
-    sample_rate: u16,
-    sequencing_kit: String,
-    sequencer_position: String,
-    sequencer_position_type: String,
-    software: String,
-    system_name: String,
-    system_type: String,
+pub struct Pod5Info {
+    pub acquisition_id: String,
+    pub acquisition_start_time: DateTime<Utc>,
+    pub adc_max: i16,
+    pub adc_min: i16,
+    pub experiment_name: String,
+    pub flow_cell_id: String,
+    pub flow_cell_product_code: String,
+    pub protocol_name: String,
+    pub protocol_run_id: String,
+    pub protocol_start_time: DateTime<Utc>,
+    pub sample_id: String,
+    pub sample_rate: u16,
+    pub sequencing_kit: String,
+    pub sequencer_position: String,
+    pub sequencer_position_type: String,
+    pub software: String,
+    pub system_name: String,
+    pub system_type: String,
 }
 
 impl Pod5Info {
@@ -76,25 +75,25 @@ impl Pod5Info {
         let mut system_type = String::new();
 
         // Update variables with actual values
-        acquisition_id = "acquisition_123".to_string();
-        acquisition_start_time = Utc::now();
-        adc_max = 32767;
-        adc_min = -32768;
-        experiment_name = "Experiment XYZ".to_string();
-        flow_cell_id = "FC123456".to_string();
-        flow_cell_product_code = "FCPROD123".to_string();
-        protocol_name = "Protocol ABC".to_string();
-        protocol_run_id = "protocol_run_456".to_string();
-        protocol_start_time = Utc::now();
-        sample_id = "sample_789".to_string();
-        sample_rate = 44100;
-        sequencing_kit = "SEQKIT123".to_string();
-        sequencer_position = "Position A1".to_string();
-        sequencer_position_type = "Type B".to_string();
-        software = "Software v1.0".to_string();
-        system_name = "System Name".to_string();
-        system_type = "System Type".to_string();
-
+        // acquisition_id = "acquisition_123".to_string();
+        // acquisition_start_time = Utc::now();
+        // adc_max = 32767;
+        // adc_min = -32768;
+        // experiment_name = "Experiment XYZ".to_string();
+        // flow_cell_id = "FC123456".to_string();
+        // flow_cell_product_code = "FCPROD123".to_string();
+        // protocol_name = "Protocol ABC".to_string();
+        // protocol_run_id = "protocol_run_456".to_string();
+        // protocol_start_time = Utc::now();
+        // sample_id = "sample_789".to_string();
+        // sample_rate = 44100;
+        // sequencing_kit = "SEQKIT123".to_string();
+        // sequencer_position = "Position A1".to_string();
+        // sequencer_position_type = "Type B".to_string();
+        // software = "Software v1.0".to_string();
+        // system_name = "System Name".to_string();
+        // system_type = "System Type".to_string();
+        //
         if let Some(contents) = footer.contents() {
             for content in contents.iter() {
                 match content.content_type() {