

## Install

### Dependencies

For building required HTSlib:
```
sudo apt install cmake libclang-dev

```

* minimap2 
* (samtools)[https://www.htslib.org/download/]
* (dorado)[https://github.com/nanoporetech/dorado]
* (bcftools)[https://www.htslib.org/download/]
* (modkit)[https://github.com/nanoporetech/modkit]
* VEP: cf pandora_lib_variants for VEP install
* nanomonsv (cf dependencies at github, TODO: use racon)
###
