no gvcf for deep callers

src/callers/deep_somatic.rs

@@ -120,11 +120,11 @@ impl Run for DeepSomatic {
                     "/output/{}_{}_DeepSomatic.vcf.gz",
                     self.id, self.config.tumoral_name
                 ),
-                "--output_gvcf",
-                &format!(
-                    "/output/{}_{}_DeepSomatic.g.vcf.gz",
-                    self.id, self.config.tumoral_name
-                ),
+                // "--output_gvcf",
+                // &format!(
+                //     "/output/{}_{}_DeepSomatic.g.vcf.gz",
+                //     self.id, self.config.tumoral_name
+                // ),
                 &format!("--num_shards={}", self.config.deepsomatic_threads),
                 "--logging_dir",
                 &format!(

src/callers/deep_variant.rs

@@ -141,11 +141,11 @@ impl Run for DeepVariant {
                 &bam,
                 "--output_vcf",
                 &format!("/output/{}_{}_DeepVariant.vcf.gz", self.id, self.time_point),
-                "--output_gvcf",
-                &format!(
-                    "/output/{}_{}_DeepVariant.g.vcf.gz",
-                    self.id, self.time_point
-                ),
+                // "--output_gvcf",
+                // &format!(
+                //     "/output/{}_{}_DeepVariant.g.vcf.gz",
+                //     self.id, self.time_point
+                // ),
                 &format!("--num_shards={}", self.config.deepvariant_threads),
                 "--logging_dir",
                 "--vcf_stats_report=true",