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@@ -124,7 +124,6 @@ impl Default for Config {
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pub struct AlignConfig {
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pub dorado_bin: String,
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pub dorado_basecall_arg: String,
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- // pub dorado_sequencing_kit: String,
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pub ref_fa: String,
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pub ref_mmi: String,
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pub samtools_view_threads: u16,
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@@ -136,7 +135,6 @@ impl Default for AlignConfig {
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Self {
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dorado_bin: "/data/tools/dorado-0.9.0-linux-x64/bin/dorado".to_string(),
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dorado_basecall_arg: "-x 'cuda:0,1,2,3' sup,5mC_5hmC".to_string(), // since v0.8.0 need
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- // dorado_sequencing_kit: "SQK-NBD114-24".to_string(),
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// to specify cuda devices (exclude the T1000)
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ref_fa: "/data/ref/hs1/chm13v2.0.fa".to_string(),
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ref_mmi: "/data/ref/chm13v2.0.mmi".to_string(),
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