filter mapq

src/pipes/somatic.rs

@@ -303,7 +303,7 @@ impl Run for SomaticPipe {
         });
 
         let n_masked_lowqual = annotations.retain_variants(&mut variants_collections, |anns| {
-            !anns.contains(&Annotation::LowMAPQ)
+            anns.contains(&Annotation::LowMAPQ)
         });
         info!("N low mapq filtered: {}", n_masked_lowqual);