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@@ -79,6 +79,7 @@ pub struct Config {
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pub panels: Vec<(String, String)>,
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pub cpg_bed: String,
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pub max_depth_low_quality: u32,
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+ pub bam_composition_sample_size: u32,
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}
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// Here comes names that can't be changed from output of tools
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@@ -118,6 +119,7 @@ impl Default for Config {
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bam_min_mapq: 40,
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bam_n_threads: 150,
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+ bam_composition_sample_size: 20_000,
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db_cases_path: "/data/cases.sqlite".to_string(),
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