@@ -318,6 +318,7 @@ impl Run for SomaticPipe {
// info!("\t - {} {}: {}", coll.vcf.caller, coll.vcf.time, rm);
// });
+ println!("mlfjs");
// MASK mapq
let (mut high_depth_ranges, mut low_quality_ranges) =
somatic_depth_quality_ranges(&id, &config)?;
@@ -575,6 +575,7 @@ pub fn somatic_depth_quality_ranges(
id: &str,
config: &Config,
) -> anyhow::Result<(Vec<GenomeRange>, Vec<GenomeRange>)> {
+ println!("somatic_depth_quality_ranges");
// chr1..chr22 + X,Y,M
let contigs: Vec<String> = read_dict(&config.dict_file)?
.into_iter()