config: added db_snp

pandora-config.example.toml

@@ -44,6 +44,9 @@ dict_file = "/home/t_steimle/ref/hs1/chm13v2.0.dict"
 # RefSeq GFF3 annotation (sorted/indexed).
 refseq_gff = "/home/t_steimle/ref/hs1/chm13v2.0_RefSeq_Liftoff_v5.1_sorted.gff3.gz"
 
+# dbSNP vcf.gz file (should be indexed)
+db_snp = "/home/t_steimle/ref/hs1/chm13v2.0_dbSNPv155.vcf.gz"
+
 # Template for mask BED file (low-quality / filtered regions).
 # {result_dir} -> global result directory
 # {id}         -> case identifier

src/config.rs

@@ -63,6 +63,9 @@ pub struct Config {
     /// Path to the RefSeq GFF3 annotation, sorted and indexed.
     pub refseq_gff: String,
 
+    ///  dbSNP vcf.gz file (should be indexed)
+    pub db_snp: String,
+
     /// BED template used to mask low-quality or filtered regions.
     ///
     /// Placeholders: