Sfoglia il codice sorgente

limit clairs threads

Thomas 1 settimana fa
parent
commit
d17bbe3ad5
2 ha cambiato i file con 2 aggiunte e 1 eliminazioni
  1. 1 1
      pandora-config.example.toml
  2. 1 0
      src/commands/mod.rs

+ 1 - 1
pandora-config.example.toml

@@ -191,7 +191,7 @@ deepsomatic_force = false
 #######################################
 
 # Threads for ClairS.
-clairs_threads = 40
+clairs_threads = 20
 
 # ClairS docker tag.
 clairs_image = "/mnt/beegfs02/scratch/t_steimle/somatic_pipe_tools/clairs_latest.sif"

+ 1 - 0
src/commands/mod.rs

@@ -817,6 +817,7 @@ where
     //     results.push(res);
     // }
 
+    // Rule for the IGR cluster because the admins dont want to implement propoper rules so we are 
     let max_parallel = 20;
     let pool = rayon::ThreadPoolBuilder::new()
         .num_threads(max_parallel)