nanomonsv -> mediumq; GATK ok

hs_err_pid4007520.log

@@ -0,0 +1,7391 @@
+#
+# A fatal error has been detected by the Java Runtime Environment:
+#
+#  SIGSEGV (0xb) at pc=0x000015266cc18c73, pid=4007520, tid=4007521
+#
+# JRE version: OpenJDK Runtime Environment (17.0.12+7) (build 17.0.12+7-Ubuntu-1ubuntu222.04)
+# Java VM: OpenJDK 64-Bit Server VM (17.0.12+7-Ubuntu-1ubuntu222.04, mixed mode, sharing, tiered, compressed oops, compressed class ptrs, g1 gc, linux-amd64)
+# Problematic frame:
+# C  [libgkl_pairhmm_omp5993824932739952703.so+0x18c73]  double compute_full_prob_avxd<double>(testcase*)+0x333
+#
+# Core dump will be written. Default location: Core dumps may be processed with "/usr/lib/systemd/systemd-coredump %P %u %g %s %t %c %h" (or dumping to /home/t_steimle/softwares/pandora_lib_promethion/core.4007520)
+#
+# If you would like to submit a bug report, please visit:
+#   https://bugs.launchpad.net/ubuntu/+source/openjdk-17
+# The crash happened outside the Java Virtual Machine in native code.
+# See problematic frame for where to report the bug.
+#
+
+---------------  S U M M A R Y ------------
+
+Command Line: -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx27g /gatk/gatk-package-4.6.2.0-local.jar Mutect2 --reference /home/t_steimle/ref/hs1/chm13v2.0.fa --input /mnt/beegfs02/scratch/t_steimle/data/wgs/CHALO/diag/CHALO_diag_hs1.bam --input /mnt/beegfs02/scratch/t_steimle/data/wgs/CHALO/norm/CHALO_norm_hs1.bam --normal-sample barcode06 --intervals /mnt/beegfs02/scratch/t_steimle/data/wgs/CHALO/diag/GATK/part39/intervals.bed --callable-depth 6 --germline-resource /mnt/beegfs02/scratch/t_steimle/data/wgs/CHALO/diag/ClairS/CHALO_diag_clair3-germline_PASSED.vcf.gz --native-pair-hmm-threads 8 --f1r2-tar-gz /output/f1r2.tar.gz --output /output/raw.vcf.gz
+
+Host: Intel(R) Xeon(R) CPU E5-2670 v3 @ 2.30GHz, 48 cores, 251G, Ubuntu 22.04.5 LTS
+Time: Thu Apr 23 15:32:39 2026 CEST elapsed time: 3604.727311 seconds (0d 1h 0m 4s)
+
+---------------  T H R E A D  ---------------
+
+Current thread (0x00001526d4016db0):  JavaThread "main" [_thread_in_native, id=4007521, stack(0x00001526d9b3d000,0x00001526d9c3d000)]
+
+Stack: [0x00001526d9b3d000,0x00001526d9c3d000],  sp=0x00001526d9b30050,  free space=18014398509481932k
+Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
+C  [libgkl_pairhmm_omp5993824932739952703.so+0x18c73]  double compute_full_prob_avxd<double>(testcase*)+0x333
+C  [libgkl_pairhmm_omp5993824932739952703.so+0x1500f]  Java_com_intel_gkl_pairhmm_IntelPairHmm_computeLikelihoodsNative._omp_fn.0+0xcf
+
+Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
+J 6895  com.intel.gkl.pairhmm.IntelPairHmm.computeLikelihoodsNative([Ljava/lang/Object;[Ljava/lang/Object;[D)V (0 bytes) @ 0x00001526c561019c [0x00001526c5610120+0x000000000000007c]
+J 7548 c2 org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM.computeLog10Likelihoods(Lorg/broadinstitute/hellbender/utils/genotyper/LikelihoodMatrix;Ljava/util/List;Lorg/broadinstitute/hellbender/utils/pairhmm/PairHMMInputScoreImputator;)V (450 bytes) @ 0x00001526c576022c [0x00001526c575e8a0+0x000000000000198c]
+J 8881 c2 org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine.computeReadLikelihoods(Lorg/broadinstitute/hellbender/tools/walkers/haplotypecaller/AssemblyResultSet;Lorg/broadinstitute/hellbender/utils/genotyper/SampleList;Ljava/util/Map;Z)Lorg/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods; (25 bytes) @ 0x00001526c557fd34 [0x00001526c557fb60+0x00000000000001d4]
+J 9458 c2 org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2Engine.callRegion(Lorg/broadinstitute/hellbender/engine/AssemblyRegion;Lorg/broadinstitute/hellbender/engine/ReferenceContext;Lorg/broadinstitute/hellbender/engine/FeatureContext;)Ljava/util/List; (962 bytes) @ 0x00001526c586dae8 [0x00001526c586bb40+0x0000000000001fa8]
+J 7994 c2 org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2.apply(Lorg/broadinstitute/hellbender/engine/AssemblyRegion;Lorg/broadinstitute/hellbender/engine/ReferenceContext;Lorg/broadinstitute/hellbender/engine/FeatureContext;)V (30 bytes) @ 0x00001526c56c0808 [0x00001526c56c07c0+0x0000000000000048]
+J 9263 c1 org.broadinstitute.hellbender.engine.AssemblyRegionWalker.processReadShard(Lorg/broadinstitute/hellbender/engine/MultiIntervalLocalReadShard;Lorg/broadinstitute/hellbender/engine/ReferenceDataSource;Lorg/broadinstitute/hellbender/engine/FeatureManager;)V (154 bytes) @ 0x00001526bdf296f4 [0x00001526bdf272a0+0x0000000000002454]
+j  org.broadinstitute.hellbender.engine.AssemblyRegionWalker.traverse()V+83
+j  org.broadinstitute.hellbender.engine.GATKTool.doWork()Ljava/lang/Object;+19
+j  org.broadinstitute.hellbender.cmdline.CommandLineProgram.runTool()Ljava/lang/Object;+34
+j  org.broadinstitute.hellbender.cmdline.CommandLineProgram.instanceMainPostParseArgs()Ljava/lang/Object;+230
+j  org.broadinstitute.hellbender.cmdline.CommandLineProgram.instanceMain([Ljava/lang/String;)Ljava/lang/Object;+14
+j  org.broadinstitute.hellbender.Main.runCommandLineProgram(Lorg/broadinstitute/hellbender/cmdline/CommandLineProgram;[Ljava/lang/String;)Ljava/lang/Object;+20
+j  org.broadinstitute.hellbender.Main.mainEntry([Ljava/lang/String;)V+22
+j  org.broadinstitute.hellbender.Main.main([Ljava/lang/String;)V+8
+v  ~StubRoutines::call_stub
+
+siginfo: si_signo: 11 (SIGSEGV), si_code: 2 (SEGV_ACCERR), si_addr: 0x00001526d9b34000
+
+Registers:
+RAX=0x00000000000000f2, RBX=0x00001526d9b679b0, RCX=0x0000000000000d5e, RDX=0x00001526d9b34000
+RSP=0x00001526d9b30050, RBP=0x00001526d9c3adb0, RSI=0x000000000000357b, RDI=0x0000000000000002
+R8 =0x000000000000349d, R9 =0x0000000000000001, R10=0x00000000000000da, R11=0x00001526d46a9ca0
+R12=0x00001526d9b4cdc0, R13=0x00001526d9b321d0, R14=0x000000000001abe8, R15=0x000000000000357d
+RIP=0x000015266cc18c73, EFLAGS=0x0000000000010202, CSGSFS=0x002b000000000033, ERR=0x0000000000000007
+  TRAPNO=0x000000000000000e
+
+
+Register to memory mapping:
+
+RAX=0x00000000000000f2 is an unknown value
+RBX=0x00001526d9b679b0 is pointing into the stack for thread: 0x00001526d4016db0
+RCX=0x0000000000000d5e is an unknown value
+RDX=0x00001526d9b34000: <offset 0x0000000000000000> in /usr/lib/jvm/java-17-openjdk-amd64/lib/libjimage.so at 0x00001526d9b34000
+RSP=0x00001526d9b30050 points into unknown readable memory: 0xe4002aaa22210612 | 12 06 21 22 aa 2a 00 e4
+RBP=0x00001526d9c3adb0 is pointing into the stack for thread: 0x00001526d4016db0
+RSI=0x000000000000357b is an unknown value
+RDI=0x0000000000000002 is an unknown value
+R8 =0x000000000000349d is an unknown value
+R9 =0x0000000000000001 is an unknown value
+R10=0x00000000000000da is an unknown value
+R11=0x00001526d46a9ca0 points into unknown readable memory: 0x4343414754414141 | 41 41 41 54 47 41 43 43
+R12=0x00001526d9b4cdc0 is pointing into the stack for thread: 0x00001526d4016db0
+R13=0x00001526d9b321d0 points into unknown readable memory: 0x7f32c9fb4d812ca0 | a0 2c 81 4d fb c9 32 7f
+R14=0x000000000001abe8 is an unknown value
+R15=0x000000000000357d is an unknown value
+
+
+Top of Stack: (sp=0x00001526d9b30050)
+0x00001526d9b30050:   e4002aaa22210612 0386555454c67968
+0x00001526d9b30060:   1061000101008084 0818800088180001
+0x00001526d9b30070:   ffffffffffffffff c0000c0009201400
+0x00001526d9b30080:   01cbc0070214a880 12342390f44b417f
+0x00001526d9b30090:   2c00106800800200 ffffffffffffffff
+0x00001526d9b300a0:   000a208008188240 0001057171010410
+0x00001526d9b300b0:   ffe08a0a0084212c 0014500486625883
+0x00001526d9b300c0:   ffffffffffffffff 00c0020000000000
+0x00001526d9b300d0:   a934dc0000000000 440a204000000000
+0x00001526d9b300e0:   1201018000000000 ffffffffffffffff
+0x00001526d9b300f0:   0000000000000000 0000000000000000
+0x00001526d9b30100:   0000000000000000 0000000000000000
+0x00001526d9b30110:   ffffffffffffffff 0000000000000000
+0x00001526d9b30120:   0000000000000000 0000000000000000
+0x00001526d9b30130:   0000000000000000 ffffffffffffffff
+0x00001526d9b30140:   0000000000000000 0000000000000000
+0x00001526d9b30150:   0000000000000000 0000000000000000
+0x00001526d9b30160:   ffffffffffffffff 0000000000000000
+0x00001526d9b30170:   0000000000000000 0000000000000000
+0x00001526d9b30180:   0000000000000000 ffffffffffffffff
+0x00001526d9b30190:   0000000000000000 0000000000000000
+0x00001526d9b301a0:   0000000000000000 0000000000000000
+0x00001526d9b301b0:   ffffffffffffffff 0000000000000000
+0x00001526d9b301c0:   0000000000000000 0000000000000000
+0x00001526d9b301d0:   0000000000000000 ffffffffffffffff
+0x00001526d9b301e0:   0000000000000000 0000000000000000
+0x00001526d9b301f0:   0000000000000000 0000000000000000
+0x00001526d9b30200:   ffffffffffffffff 0000000000000000
+0x00001526d9b30210:   0000000000000000 0000000000000000
+0x00001526d9b30220:   0000000000000000 ffffffffffffffff
+0x00001526d9b30230:   0000000000000000 0000000000000000
+0x00001526d9b30240:   0000000000000000 0000000000000000 
+
+Instructions: (pc=0x000015266cc18c73)
+0x000015266cc18b73:   04 c5 fb 10 16 c4 c1 7b 2a c2 c5 eb 5e d8 0f 8e
+0x000015266cc18b83:   63 01 00 00 41 8d 46 03 31 f6 48 89 df c5 fb 11
+0x000015266cc18b93:   9d f0 fd ff ff 44 89 95 10 fe ff ff 44 89 85 50
+0x000015266cc18ba3:   fe ff ff 4c 8d 34 c5 08 00 00 00 c5 fb 11 95 30
+0x000015266cc18bb3:   fe ff ff 89 85 70 fe ff ff 4c 89 f2 e8 cc b8 ff
+0x000015266cc18bc3:   ff 31 f6 4c 89 f2 4c 89 e7 e8 bf b8 ff ff 4c 89
+0x000015266cc18bd3:   e8 8b 8d 70 fe ff ff be 05 00 00 00 48 c1 e8 03
+0x000015266cc18be3:   44 8b 85 50 fe ff ff 44 8b 95 10 fe ff ff 48 f7
+0x000015266cc18bf3:   d8 83 e0 03 8d 50 03 83 fa 05 0f 42 d6 31 ff 39
+0x000015266cc18c03:   ca c5 fb 10 95 30 fe ff ff c5 fb 10 9d f0 fd ff
+0x000015266cc18c13:   ff 77 74 85 c0 74 3b 48 8b 8d d0 fd ff ff 83 f8
+0x000015266cc18c23:   01 bf 01 00 00 00 c5 fb 11 1c cd 00 00 00 00 74
+0x000015266cc18c33:   21 83 f8 02 c5 fb 11 1c cd 08 00 00 00 bf 02 00
+0x000015266cc18c43:   00 00 74 0e c5 fb 11 1c cd 10 00 00 00 bf 03 00
+0x000015266cc18c53:   00 00 c5 fb 12 c3 44 89 fe 49 8d 54 c5 00 29 c6
+0x000015266cc18c63:   31 c0 89 f1 c4 e3 7d 18 c0 01 c1 e9 02 83 c0 01
+0x000015266cc18c73:   c5 fd 29 02 48 83 c2 20 39 c8 72 f1 89 f0 83 e0
+0x000015266cc18c83:   fc 01 c7 39 f0 74 60 48 63 c7 c4 c1 7b 11 5c c5
+0x000015266cc18c93:   00 8d 47 01 41 39 c7 7e 4e 48 98 c4 c1 7b 11 5c
+0x000015266cc18ca3:   c5 00 8d 47 02 41 39 c7 7e 3d 48 98 c4 c1 7b 11
+0x000015266cc18cb3:   5c c5 00 8d 47 03 41 39 c7 7e 2c 48 98 c4 c1 7b
+0x000015266cc18cc3:   11 5c c5 00 8d 47 04 41 39 c7 7e 1b 83 c7 05 48
+0x000015266cc18cd3:   98 41 39 ff c4 c1 7b 11 5c c5 00 7e 0a 48 63 ff
+0x000015266cc18ce3:   c4 c1 7b 11 5c fd 00 48 8b 85 50 fd ff ff 83 bd
+0x000015266cc18cf3:   d0 fe ff ff 01 48 8b 8d 48 fc ff ff 48 8b bd 40
+0x000015266cc18d03:   fc ff ff 48 c7 00 00 00 00 00 48 8b 85 60 fc ff
+0x000015266cc18d13:   ff 48 c7 01 00 00 00 00 48 c7 07 00 00 00 00 48
+0x000015266cc18d23:   c7 00 00 00 00 00 48 8b 85 58 fd ff ff 48 c7 00
+0x000015266cc18d33:   00 00 00 00 48 8b 85 68 fc ff ff 48 c7 00 00 00
+0x000015266cc18d43:   00 00 0f 8e 70 01 00 00 48 8b 85 60 fd ff ff 44
+0x000015266cc18d53:   89 95 70 fe ff ff 31 f6 48 89 9d 50 fe ff ff 4c
+0x000015266cc18d63:   89 a5 30 fe ff ff 49 89 fa 4c 89 ad 10 fe ff ff 
+
+
+Stack slot to memory mapping:
+stack at sp + 0 slots: 0xe4002aaa22210612 is an unknown value
+stack at sp + 1 slots: 0x0386555454c67968 is an unknown value
+stack at sp + 2 slots: 0x1061000101008084 is an unknown value
+stack at sp + 3 slots: 0x0818800088180001 is an unknown value
+stack at sp + 4 slots: 0xffffffffffffffff is an unknown value
+stack at sp + 5 slots: 0xc0000c0009201400 is an unknown value
+stack at sp + 6 slots: 0x01cbc0070214a880 is an unknown value
+stack at sp + 7 slots: 0x12342390f44b417f is an unknown value
+
+
+Compiled method (n/a) 3604733 6895     n 0       com.intel.gkl.pairhmm.IntelPairHmm::computeLikelihoodsNative (native)
+ total in heap  [0x00001526c560ff90,0x00001526c5610328] = 920
+ relocation     [0x00001526c56100f0,0x00001526c5610120] = 48
+ main code      [0x00001526c5610120,0x00001526c5610320] = 512
+ oops           [0x00001526c5610320,0x00001526c5610328] = 8
+
+[Constant Pool (empty)]
+
+[MachCode]
+[Entry Point]
+  # {method} {0x00001526664db360} 'computeLikelihoodsNative' '([Ljava/lang/Object;[Ljava/lang/Object;[D)V' in 'com/intel/gkl/pairhmm/IntelPairHmm'
+  # this:     rsi:rsi   = 'com/intel/gkl/pairhmm/IntelPairHmm'
+  # parm0:    rdx:rdx   = '[Ljava/lang/Object;'
+  # parm1:    rcx:rcx   = '[Ljava/lang/Object;'
+  # parm2:    r8:r8     = '[D'
+  #           [sp+0x50]  (sp of caller)
+  0x00001526c5610120: 448b 5608 | 49bb 0000 | 001f 2615 | 0000 4d03 | d349 3bc2 | 0f84 0600 
+
+  0x00001526c5610138: ;   {runtime_call ic_miss_stub}
+  0x00001526c5610138: 0000 e941 | 7c4f ff90 
+[Verified Entry Point]
+  0x00001526c5610140: 8984 2400 | c0fe ff55 | 488b ec48 | 83ec 404c | 8944 2418 | 4983 f800 | 4c8d 4424 | 184c 0f44 
+  0x00001526c5610160: 4424 1848 | 894c 2410 | 4883 f900 | 488d 4c24 | 1048 0f44 | 4c24 1048 | 8954 2408 | 4883 fa00 
+  0x00001526c5610180: 488d 5424 | 0848 0f44 | 5424 0848 | 8934 2448 | 83fe 0048 | 8d34 2448 | 0f44 3424 
+
+  0x00001526c561019c: ;   {internal_word}
+  0x00001526c561019c: c5f8 7749 | ba9c 0161 | c526 1500 | 004d 8997 | 9802 0000 | 4989 a790 
+
+  0x00001526c56101b4: ;   {external_word}
+  0x00001526c56101b4: 0200 0080 | 3d67 0fca | 1500 0f84 | 3a00 0000 | 5652 5141 
+
+  0x00001526c56101c8: ;   {metadata({method} {0x00001526664db360} 'computeLikelihoodsNative' '([Ljava/lang/Object;[Ljava/lang/Object;[D)V' in 'com/intel/gkl/pairhmm/IntelPairHmm')}
+  0x00001526c56101c8: 5048 be60 | b34d 6626 | 1500 0049 | 8bff f7c4 | 0f00 0000 | 0f84 1200 | 0000 4883 
+
+  0x00001526c56101e4: ;   {runtime_call SharedRuntime::dtrace_method_entry(JavaThread*, Method*)}
+  0x00001526c56101e4: ec08 e845 | 9e65 1548 | 83c4 08e9 | 0500 0000 
+
+  0x00001526c56101f4: ;   {runtime_call SharedRuntime::dtrace_method_entry(JavaThread*, Method*)}
+  0x00001526c56101f4: e837 9e65 | 1541 5859 | 5a5e 498d | bfb0 0200 | 0041 c787 | 4003 0000 | 0400 0000 
+
+  0x00001526c5610210: ;   {runtime_call Java_com_intel_gkl_pairhmm_IntelPairHmm_computeLikelihoodsNative}
+  0x00001526c5610210: e8cb 5260 | a7c5 f877 | 41c7 8740 | 0300 0005 | 0000 00f0 | 8344 24c0 | 0049 3baf | 4803 0000 
+  0x00001526c5610230: 0f87 1100 | 0000 4181 | bf30 0300 | 0000 0000 | 000f 841c | 0000 00c5 | f877 498b | ff4c 8be4 
+  0x00001526c5610250: 4883 ec00 | 4883 e4f0 
+
+  0x00001526c5610258: ;   {runtime_call JavaThread::check_special_condition_for_native_trans(JavaThread*)}
+  0x00001526c5610258: e833 a081 | 1549 8be4 | 4d33 e441 | c787 4003 | 0000 0800 | 0000 4181 | bfb0 0300 | 0002 0000 
+  0x00001526c5610278: 000f 847c 
+
+  0x00001526c561027c: ;   {external_word}
+  0x00001526c561027c: 0000 0080 | 3d9f 0eca | 1500 0f84 | 3000 0000 
+
+  0x00001526c561028c: ;   {metadata({method} {0x00001526664db360} 'computeLikelihoodsNative' '([Ljava/lang/Object;[Ljava/lang/Object;[D)V' in 'com/intel/gkl/pairhmm/IntelPairHmm')}
+  0x00001526c561028c: 48be 60b3 | 4d66 2615 | 0000 498b | fff7 c40f | 0000 000f | 8412 0000 | 0048 83ec 
+
+  0x00001526c56102a8: ;   {runtime_call SharedRuntime::dtrace_method_exit(JavaThread*, Method*)}
+  0x00001526c56102a8: 08e8 a29d | 6515 4883 | c408 e905 
+
+  0x00001526c56102b4: ;   {runtime_call SharedRuntime::dtrace_method_exit(JavaThread*, Method*)}
+  0x00001526c56102b4: 0000 00e8 | 949d 6515 | 49c7 8790 | 0200 0000 | 0000 0049 | c787 9802 | 0000 0000 | 0000 c5f8 
+  0x00001526c56102d4: 7749 8b8f | d800 0000 | c781 0001 | 0000 0000 | 0000 c949 | 817f 0800 | 0000 000f | 8501 0000 
+  0x00001526c56102f4: ;   {runtime_call StubRoutines (1)}
+  0x00001526c56102f4: 00c3 e905 | 794a ffc5 | f877 4c8b | e448 83ec | 0048 83e4 
+
+  0x00001526c5610308: ;   {runtime_call SharedRuntime::reguard_yellow_pages()}
+  0x00001526c5610308: f0e8 a2ab | 6515 498b | e44d 33e4 | e966 ffff | fff4 f4f4 | f4f4 f4f4 
+[/MachCode]
+
+
+Compiled method (c2) 3604802 7548       4       org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods (450 bytes)
+ total in heap  [0x00001526c575e310,0x00001526c5769408] = 45304
+ relocation     [0x00001526c575e470,0x00001526c575e880] = 1040
+ constants      [0x00001526c575e880,0x00001526c575e8a0] = 32
+ main code      [0x00001526c575e8a0,0x00001526c57647e0] = 24384
+ stub code      [0x00001526c57647e0,0x00001526c57648e8] = 264
+ oops           [0x00001526c57648e8,0x00001526c5764918] = 48
+ metadata       [0x00001526c5764918,0x00001526c5764cb0] = 920
+ scopes data    [0x00001526c5764cb0,0x00001526c5767e60] = 12720
+ scopes pcs     [0x00001526c5767e60,0x00001526c5768dc0] = 3936
+ dependencies   [0x00001526c5768dc0,0x00001526c5768e60] = 160
+ handler table  [0x00001526c5768e60,0x00001526c5769148] = 744
+ nul chk table  [0x00001526c5769148,0x00001526c5769408] = 704
+
+
+[Constant Pool]
+             Address          hex4                    hex8      
+  0x00001526c575e880:   0x2d2d2d2d      0x2d2d2d2d2d2d2d2d      
+  0x00001526c575e884:   0x2d2d2d2d                              
+  0x00001526c575e888:   0xf4f4f4f4      0xf4f4f4f4f4f4f4f4      
+  0x00001526c575e88c:   0xf4f4f4f4                              
+  0x00001526c575e890:   0xf4f4f4f4      0xf4f4f4f4f4f4f4f4      
+  0x00001526c575e894:   0xf4f4f4f4                              
+  0x00001526c575e898:   0xf4f4f4f4      0xf4f4f4f4f4f4f4f4      
+  0x00001526c575e89c:   0xf4f4f4f4                              
+
+[MachCode]
+[Entry Point]
+  # {method} {0x000015266528a838} 'computeLog10Likelihoods' '(Lorg/broadinstitute/hellbender/utils/genotyper/LikelihoodMatrix;Ljava/util/List;Lorg/broadinstitute/hellbender/utils/pairhmm/PairHMMInputScoreImputator;)V' in 'org/broadinstitute/hellbender/utils/pairhmm/VectorLoglessPairHMM'
+  # this:     rsi:rsi   = 'org/broadinstitute/hellbender/utils/pairhmm/VectorLoglessPairHMM'
+  # parm0:    rdx:rdx   = 'org/broadinstitute/hellbender/utils/genotyper/LikelihoodMatrix'
+  # parm1:    rcx:rcx   = 'java/util/List'
+  # parm2:    r8:r8     = 'org/broadinstitute/hellbender/utils/pairhmm/PairHMMInputScoreImputator'
+  #           [sp+0xe0]  (sp of caller)
+  0x00001526c575e8a0: ;   {no_reloc}
+  0x00001526c575e8a0: 448b 5608 | 49bb 0000 | 001f 2615 | 0000 4d03 | d349 3bc2 
+
+  0x00001526c575e8b4: ;   {runtime_call ic_miss_stub}
+  0x00001526c575e8b4: 0f85 c694 | 3aff 6690 | 0f1f 4000 
+[Verified Entry Point]
+  0x00001526c575e8c0: 8984 2400 | c0fe ff55 | 4881 ecd0 | 0000 004c | 8944 2420 | 4889 5424 | 104c 8bf6 
+
+  0x00001526c575e8dc: ; implicit exception: dispatches to 0x00001526c576443c
+  0x00001526c575e8dc: 448b 5108 
+
+  0x00001526c575e8e0: ;   {metadata('java/util/ArrayList')}
+  0x00001526c575e8e0: 4181 fa40 | e100 000f | 85df 4c00 | 004c 8be9 | 418b 5d10 | 85db 0f84 | d826 0000 
+
+  0x00001526c575e8fc: ;   {oop(a 'java/lang/Class'{0x0000000140f8ea28} = 'org/broadinstitute/hellbender/utils/pairhmm/PairHMM')}
+  0x00001526c575e8fc: 49ba 28ea | f840 0100 | 0000 458b | 5a74 430f | b66c dc0c | 85ed 0f84 | 444f 0000 | c5f8 7749 
+  0x00001526c575e91c: ba80 a8bb | da26 1500 | 0041 ffd2 | 4989 4618 | 4c8b 5424 | 1045 8b5a 
+
+  0x00001526c575e934: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c575e934: 0841 81fb | 1861 2c01 | 0f85 ae4c | 0000 4d8b | c245 8b58 | 1043 8b6c | dc34 458b | 54ec 084d 
+  0x00001526c575e954: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c575e954: 8d1c ec41 | 81fa a05e | 2c01 0f84 | 8a00 0000 
+
+  0x00001526c575e964: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c575e964: 4181 fa18 | 612c 010f | 857b 4f00 | 0045 8b53 | 1043 8b6c | d434 458b | 5cec 0849 
+
+  0x00001526c575e980: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c575e980: 8d34 ec41 | 81fb a05e | 2c01 743a 
+
+  0x00001526c575e98c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c575e98c: 4181 fb18 | 612c 010f | 854b 5000 | 004c 8944 | 2410 895c | 2408 4c89 | 2c24 498b | ee66 6690 
+  0x00001526c575e9ac: ;   {optimized virtual_call}
+  0x00001526c575e9ac: c5f8 77e8 
+
+  0x00001526c575e9b0: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [32]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c575e9b0: cc96 3aff | 4c8b f54c | 8b2c 248b | 5c24 084c | 8b44 2410 | eb23 448b | 560c 438b | 6cd4 0c45 
+  0x00001526c575e9d0: 8b5c ec08 
+
+  0x00001526c575e9d4: ;   {metadata('java/util/ArrayList')}
+  0x00001526c575e9d4: 4181 fb40 | e100 000f | 85cb 4f00 | 004d 8d14 | ec41 8b42 | 1044 8bd8 | eb23 458b | 5b0c 438b 
+  0x00001526c575e9f4: 6cdc 0c45 | 8b54 ec08 
+
+  0x00001526c575e9fc: ;   {metadata('java/util/ArrayList')}
+  0x00001526c575e9fc: 4181 fa40 | e100 000f | 85db 4d00 | 004d 8d14 | ec45 8b5a | 1081 fb00 | 0004 000f | 87cb 4b00 
+  0x00001526c575ea1c: 0048 63cb | 81fb 0000 | 0400 0f87 | dc30 0000 | 498b 9708 | 0100 0048 | c1e1 0248 | 83c1 174c 
+  0x00001526c575ea3c: 8bd1 4983 | e2f8 4c8b | ca4d 03ca | 4d3b 8f18 | 0100 000f | 83b3 3000 | 004d 898f | 0801 0000 
+  0x00001526c575ea5c: 410f 1881 | c000 0000 | 48c7 0201 | 0000 0041 | 0f18 8100 
+
+  0x00001526c575ea70: ;   {metadata('org/broadinstitute/gatk/nativebindings/pairhmm/ReadDataHolder'[])}
+  0x00001526c575ea70: 0100 00c7 | 4208 b0d5 | 6101 895a | 0c41 0f18 | 8140 0100 | 0048 8bfa | 4883 c710 | 410f 1881 
+  0x00001526c575ea90: 8001 0000 | 48c1 e903 | 4883 c1fe | 4833 c048 | 83f9 087f | 1048 ffc9 | 784f 4889 | 04cf 48ff 
+  0x00001526c575eab0: c97d f7eb | 44c5 fdef | c0e9 0d00 | 0000 c5fe | 7f07 c5fe | 7f47 2048 | 83c7 4048 | 83e9 087d 
+  0x00001526c575ead0: ed48 83c1 | 047c 0cc5 | fe7f 0748 | 83c7 2048 | 83e9 0448 | 83c1 047e | 1048 ffc9 | c5f9 d607 
+  0x00001526c575eaf0: 4883 c708 | 48ff c97d | f34c 8bca | 418b 7d10 | 85ff 0f84 | 8a25 0000 | 458b 550c | 488b 5424 
+  0x00001526c575eb10: 208b 4a08 
+
+  0x00001526c575eb14: ;   {metadata('org/broadinstitute/hellbender/tools/walkers/haplotypecaller/StandardPairHMMInputScoreImputator')}
+  0x00001526c575eb14: 81f9 d82b | 1d01 0f85 | b04b 0000 | 4489 5424 | 744c 894c | 2430 4489 | 5c24 244c | 8944 2410 
+  0x00001526c575eb34: 895c 2420 | 4c89 6c24 | 7848 8954 | 2440 4c89 | 7424 0848 | 8954 2468 
+
+  0x00001526c575eb4c: ;   {section_word}
+  0x00001526c575eb4c: c5fa 7e05 | 2cfd ffff | c4e2 7959 | c048 b900 | 00f8 b526 | 1500 0041 | bb01 0000 | 0045 33d2 
+  0x00001526c575eb6c: 4533 c941 | b8ff ffff | ff48 898c | 24a8 0000 | 0044 899c | 24b0 0000 | 0044 8994 | 24a4 0000 
+  0x00001526c575eb8c: 0044 898c | 24a0 0000 | 0041 8bc8 | e985 0500 | 004c 8b54 | 2460 418b | 6a0c 458b 
+
+  0x00001526c575eba8: ;   {metadata('htsjdk/samtools/BAMRecord')}
+  0x00001526c575eba8: 54ec 0841 | 81fa 0036 | 5e01 0f85 | 5042 0000 | 48c1 e503 | 448b 5d2c | 443b 6570 | 0f84 2614 
+  0x00001526c575ebc8: 0000 4585 | db0f 8447 | 2900 004b | 8d1c dc44 | 8b53 0c44 | 8954 2438 | 4963 ea41 | 81fa 0000 
+  0x00001526c575ebe8: 1000 0f87 | a52e 0000 | 498b 9f08 | 0100 0048 | 8bcd 4883 | c117 4c8b | d149 83e2 | f84c 8bdb 
+  0x00001526c575ec08: 4d03 da4d | 3b9f 1801 | 0000 0f83 | 7d2e 0000 | 4d89 9f08 | 0100 0041 | 0f18 83c0 | 0000 0048 
+  0x00001526c575ec28: c703 0100 | 0000 410f | 1883 0001 
+
+  0x00001526c575ec34: ;   {metadata({type array byte})}
+  0x00001526c575ec34: 0000 c743 | 0848 6800 | 0044 8b44 | 2438 4489 | 430c 410f | 1883 4001 | 0000 488b | fb48 83c7 
+  0x00001526c575ec54: 1041 0f18 | 8380 0100 | 0048 c1e9 | 0348 83c1 | fe48 33c0 | 4883 f908 | 7f10 48ff | c978 4f48 
+  0x00001526c575ec74: 8904 cf48 | ffc9 7df7 | eb44 c5f5 | efc9 e90d | 0000 00c5 | fe7f 0fc5 | fe7f 4f20 | 4883 c740 
+  0x00001526c575ec94: 4883 e908 | 7ded 4883 | c104 7c0c | c5fe 7f0f | 4883 c720 | 4883 e904 | 4883 c104 | 7e10 48ff 
+  0x00001526c575ecb4: c9c5 f9d6 | 0f48 83c7 | 0848 ffc9 | 7df3 448b | 5424 3845 | 85d2 0f86 | e000 0000 | 4585 d20f 
+  0x00001526c575ecd4: 86fd 3f00 | 0045 8bda | 41ff cb45 | 3bda 0f83 | ee3f 0000 | 448b d341 | 83e2 0f41 | bbff ffff 
+  0x00001526c575ecf4: ff45 2bda | 41ba 0400 | 0000 c442 | a8f5 d349 | 83c2 014c | 3bd5 490f | 4cea 448b | d545 33c9 
+  0x00001526c575ed14: 42c6 440b | 102d 458b | c141 ffc0 | 453b c27d | 0545 8bc8 | ebea 448b | 5424 3841 | 83c2 e145 
+  0x00001526c575ed34: 3bc2 0f8d | ec3f 0000 | 41ff c144 | 8b5c 2438 | 452b d941 | 83c3 e145 | 33c0 453b | d145 0f4c 
+  0x00001526c575ed54: d841 81fb | 007d 0000 | b900 7d00 | 0044 0f47 | d945 03d9 | 0f1f 8400 | 0000 0000 | 4d63 c1c4 
+  0x00001526c575ed74: a17a 7f44 | 0310 c4a1 | 7a7f 4403 | 2041 83c1 | 2045 3bcb | 7ce6 4d8b | 9f50 0300 
+
+  0x00001526c575ed90: ; ImmutableOopMap {rbx=Oop [0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.Arrays::fill@17 (line 3286)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@21 (line 858)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+                      ;   {poll}
+  0x00001526c575ed90: 0041 8503 | 453b ca7c | a644 3b4c | 2438 7d10 | 42c6 440b | 102d 41ff | c144 3b4c | 2438 7cf0 
+  0x00001526c575edb0: 448b 5424 | 2c45 85d2 | 0f84 aa3a | 0000 4180 | 7f38 000f | 85c8 2700 | 004c 8bd3 | 448b 5c24 
+  0x00001526c575edd0: 2c49 c1e3 | 034c 8bcb | 49c1 e903 | 8b4c 242c | 4589 4ccc | 184d 33d3 | 49c1 ea18 | 4d85 d274 
+  0x00001526c575edf0: 1a49 c1eb | 0948 bf00 | 00f8 b526 | 1500 0049 | 03fb 803f | 040f 85f9 | 2700 004c | 8b54 2460 
+  0x00001526c575ee10: 458b 420c 
+
+  0x00001526c575ee14: ; implicit exception: dispatches to 0x00001526c5763fa0
+  0x00001526c575ee14: 478b 5cc4 | 084c 8b14 | 2445 8b12 | 4489 5424 
+
+  0x00001526c575ee24: ;   {metadata('htsjdk/samtools/BAMRecord')}
+  0x00001526c575ee24: 2c41 81fb | 0036 5e01 | 0f85 2e3b | 0000 4b8d | 2cc4 448b | 5528 443b | 6570 7550 | 498b da48 
+  0x00001526c575ee44: c1e3 0345 | 85d2 7551 | 488b ebbe | 45ff ffff | 4c8b 5424 | 084c 8914 | 244c 8b54 | 2410 4c89 
+  0x00001526c575ee64: 5424 0844 | 8b5c 2420 | 4489 5c24 | 1844 8b54 | 2424 4489 | 5424 1c4c | 8b54 2430 | 4c89 5424 
+  0x00001526c575ee84: 2066 6690 
+
+  0x00001526c575ee88: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c575ee88: c5f8 77e8 
+
+  0x00001526c575ee8c: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getLength@9 (line 275)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::gapContinuationPenalties@4 (line 44)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@171 (line 127)
+  0x00001526c575ee8c: 70e7 3aff | 4585 d20f | 84ad 2800 | 004b 8d1c | d444 8b5b | 0c44 895c | 243c 4963 | eb41 81fb 
+  0x00001526c575eeac: 0000 1000 | 0f87 cb29 | 0000 498b | 9f08 0100 | 0048 8bcd | 4883 c117 | 4c8b d149 | 83e2 f84c 
+  0x00001526c575eecc: 8bdb 4d03 | da4d 3b9f | 1801 0000 | 0f83 a329 | 0000 4d89 | 9f08 0100 | 0041 0f18 | 83c0 0000 
+  0x00001526c575eeec: 0048 c703 | 0100 0000 | 410f 1883 | 0001 0000 
+
+  0x00001526c575eefc: ;   {metadata({type array byte})}
+  0x00001526c575eefc: c743 0848 | 6800 0044 | 8b44 243c | 4489 430c | 410f 1883 | 4001 0000 | 488b fb48 | 83c7 1041 
+  0x00001526c575ef1c: 0f18 8380 | 0100 0048 | c1e9 0348 | 83c1 fe48 | 33c0 4883 | f908 7f10 | 48ff c978 | 4f48 8904 
+  0x00001526c575ef3c: cf48 ffc9 | 7df7 eb44 | c5f5 efc9 | e90d 0000 | 00c5 fe7f | 0fc5 fe7f | 4f20 4883 | c740 4883 
+  0x00001526c575ef5c: e908 7ded | 4883 c104 | 7c0c c5fe | 7f0f 4883 | c720 4883 | e904 4883 | c104 7e10 | 48ff c9c5 
+  0x00001526c575ef7c: f9d6 0f48 | 83c7 0848 | ffc9 7df3 | 448b 5424 | 3c45 85d2 | 0f86 ed00 | 0000 4c8b | 5424 6845 
+  0x00001526c575ef9c: 0fbe 4a0c | 448b 5c24 | 3c45 85db | 0f86 5a39 | 0000 458b | d341 ffca | 453b d30f | 834b 3900 
+  0x00001526c575efbc: 0044 8bdb | 4183 e30f | 41b8 ffff | ffff 452b | c341 bb04 | 0000 00c4 | 42a0 f5d0 | 4983 c201 
+  0x00001526c575efdc: 4c3b d549 | 0f4c ea44 | 8bc5 4533 | d246 884c | 1310 458b | da41 ffc3 | 453b d87d | 0545 8bd3 
+  0x00001526c575effc: ebeb 448b | 4424 3c41 | 83c0 e145 | 3bd8 0f8d | 4839 0000 | c4c1 796e | c9c4 e279 | 78c9 41ff 
+  0x00001526c575f01c: c28b 7c24 | 3c41 2bfa | 83c7 e145 | 33db 453b | c241 0f4c | fb81 ff00 | 7d00 0041 | bb00 7d00 
+  0x00001526c575f03c: 0041 0f47 | fb41 03fa | 4d63 dac4 | a17a 7f4c | 1b10 c4a1 | 7a7f 4c1b | 2041 83c2 | 2044 3bd7 
+  0x00001526c575f05c: 7ce6 4d8b | 9f50 0300 
+
+  0x00001526c575f064: ; ImmutableOopMap {rbx=Oop [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [104]=Oop [120]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.Arrays::fill@17 (line 3286)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::gapContinuationPenalties@20 (line 45)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@171 (line 127)
+                      ;   {poll}
+  0x00001526c575f064: 0041 8503 | 453b d07c | b044 3b54 | 243c 7d0f | 4688 4c13 | 1041 ffc2 | 443b 5424 | 3c7c f144 
+  0x00001526c575f084: 8b54 242c | 4585 d20f | 84e7 3700 | 0041 807f | 3800 0f85 | 3025 0000 | 4c8b d344 | 8b9c 24a0 
+  0x00001526c575f0a4: 0000 0041 | ffc3 4489 | 9c24 a000 | 0000 448b | 4424 2c4f | 8d1c c44c | 8bc3 49c1 | e803 448b 
+  0x00001526c575f0c4: 4c24 2c47 | 8944 cc1c | 4d33 d349 | c1ea 184d | 85d2 741a | 49c1 eb09 | 48bf 0000 | f8b5 2615 
+  0x00001526c575f0e4: 0000 4903 | fb80 3f04 | 0f85 6d25 | 0000 4d8b | 9750 0300 
+
+  0x00001526c575f0f8: ; ImmutableOopMap {[8]=Oop [16]=Oop [48]=Oop [64]=Oop [104]=Oop [120]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@182 (line 129)
+                      ;   {poll}
+  0x00001526c575f0f8: 0041 8502 | 4c8b 5424 | 7845 8b5a | 1044 8b44 | 245c 453b | c30f 8431 | 0f00 008b | 8c24 a400 
+  0x00001526c575f118: 0000 4489 | 8424 a400 | 0000 4c8b | 5424 7841 | 8b6a 0c3b | 6c24 740f | 8591 3d00 | 0041 8b6a 
+  0x00001526c575f138: 1044 8b9c | 24a4 0000 | 0044 3bdd | 0f8d ca3d | 0000 458b | 5214 478b | 5cd4 0c44 | 8b84 24a4 
+  0x00001526c575f158: 0000 0045 | 3bc3 0f8d | f43d 0000 | 448b 8c24 | a400 0000 | 41ff c144 | 894c 245c | 453b c30f 
+  0x00001526c575f178: 8360 3300 | 0049 c1e2 | 0343 8b6c | 8210 458b 
+
+  0x00001526c575f188: ;   {metadata('org/broadinstitute/hellbender/utils/read/SAMRecordToGATKReadAdapter')}
+  0x00001526c575f188: 5cec 0841 | 81fb 683a | 2e01 0f85 | 2649 0000 | 498b 9f08 | 0100 004c | 8bd3 4983 | c220 4d8d 
+  0x00001526c575f1a8: 1cec 4c89 | 5c24 604d | 3b97 1801 | 0000 0f83 | 0126 0000 | 4d89 9708 | 0100 0041 | 0f18 82c0 
+  0x00001526c575f1c8: 0000 0048 | c703 0100 
+
+  0x00001526c575f1d0: ;   {metadata('org/broadinstitute/gatk/nativebindings/pairhmm/ReadDataHolder')}
+  0x00001526c575f1d0: 0000 c743 | 0828 6d5d | 0144 8963 | 0c4c 8963 | 104c 8963 | 1844 8b94 | 24a0 0000 | 0044 3b54 
+  0x00001526c575f1f0: 2420 0f83 | 2433 0000 | 4c8b 5424 | 3044 8b84 | 24a0 0000 | 004f 8d54 | 8210 4c89 | 1424 4180 
+  0x00001526c575f210: 7f38 000f | 85da 1f00 | 004c 8bd3 | 4c8b c349 | c1e8 034c | 8b1c 2445 | 8903 4d33 | d349 c1ea 
+  0x00001526c575f230: 184d 85d2 | 741a 49c1 | eb09 48bf | 0000 f8b5 | 2615 0000 | 4903 fb80 | 3f04 0f85 | 4920 0000 
+  0x00001526c575f250: 4c8b 5424 | 6045 8b52 | 0c47 8b44 | d408 4c8b | 1c24 418b 
+
+  0x00001526c575f264: ;   {metadata('htsjdk/samtools/BAMRecord')}
+  0x00001526c575f264: 2b41 81f8 | 0036 5e01 | 0f85 6e33 | 0000 49c1 | e203 4c89 | 5424 1845 | 8b52 284c | 8b5c 2418 
+  0x00001526c575f284: 453b 6370 | 7546 4d8b | da49 c1e3 | 034c 899c | 2480 0000 | 0045 85d2 | 7547 4c89 | 1c24 be45 
+  0x00001526c575f2a4: ffff ff4c | 8b54 2430 | 4c89 5424 | 284c 8b54 | 2460 4c89 | 5424 4044 | 8b5c 245c | 4489 5c24 
+  0x00001526c575f2c4: 3466 6690 
+
+  0x00001526c575f2c8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c575f2c8: c5f8 77e8 
+
+  0x00001526c575f2cc: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [16]=Oop [40]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBases@9 (line 255)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@111 (line 123)
+  0x00001526c575f2cc: 30e3 3aff | 4585 d20f | 84e1 2300 | 0049 c1e2 | 034c 8994 | 2480 0000 | 004c 8b94 | 2480 0000 
+  0x00001526c575f2ec: 0045 8b52 | 0c44 8954 | 2458 4585 | d20f 862b | 3800 004d | 63d2 4983 | c217 4983 | e2f8 4c89 
+  0x00001526c575f30c: 5424 1844 | 8b5c 2458 | 4181 fb00 | 0010 000f | 87d4 2400 | 0049 8b9f | 0801 0000 | 4c8b d34c 
+  0x00001526c575f32c: 8b5c 2418 | 4d03 d34d | 3b97 1801 | 0000 0f83 | b524 0000 | 4d89 9708 | 0100 0041 | 0f18 82c0 
+  0x00001526c575f34c: 0000 0048 | c703 0100 | 0000 410f | 1882 0001 
+
+  0x00001526c575f35c: ;   {metadata({type array byte})}
+  0x00001526c575f35c: 0000 c743 | 0848 6800 | 0044 8b5c | 2458 4489 | 5b0c 410f | 1882 4001 | 0000 410f | 1882 8001 
+  0x00001526c575f37c: 0000 448b | 5c24 5845 | 85db 7642 | c5fa 7f84 | 2490 0000 | 0048 8bbc | 2480 0000 | 0048 83c7 
+  0x00001526c575f39c: 1048 8bf3 | 4883 c610 | 488b 5424 | 1848 83c2 | f048 c1ea | 03c5 f877 | 49ba c0f0 | aec4 2615 
+  0x00001526c575f3bc: 0000 41ff | d2c5 fa6f | 8424 9000 | 0000 85ed | 0f84 9231 | 0000 4180 | 7f38 000f | 854c 1e00 
+  0x00001526c575f3dc: 004c 8bd3 | 4d8d 1cec | 4c8b cb49 | c1e9 0345 | 894c ec0c | 4d33 d349 | c1ea 184d | 85d2 741a 
+  0x00001526c575f3fc: 49c1 eb09 | 48bf 0000 | f8b5 2615 | 0000 4903 | fb80 3f04 | 0f85 de1e | 0000 4c8b | 5424 6045 
+  0x00001526c575f41c: 8b52 0c47 | 8b44 d408 | 4c8b 1c24 
+
+  0x00001526c575f428: ;   {metadata('htsjdk/samtools/BAMRecord')}
+  0x00001526c575f428: 418b 2b41 | 81f8 0036 | 5e01 0f85 | f831 0000 | 49c1 e203 | 4c89 5424 | 1845 8b52 | 2c4c 8b5c 
+  0x00001526c575f448: 2418 453b | 6370 0f84 | 180b 0000 | 4585 d20f | 8417 1d00 | 0049 c1e2 | 034c 8954 | 2450 4c8b 
+  0x00001526c575f468: 5424 5045 | 8b5a 0c44 | 895c 2458 | 4585 db0f | 86f7 3600 | 004d 63d3 | 4983 c217 | 4983 e2f8 
+  0x00001526c575f488: 4c89 5424 | 1841 81fb | 0000 1000 | 0f87 8b23 | 0000 498b | 9f08 0100 | 004c 8bd3 | 4c8b 5c24 
+  0x00001526c575f4a8: 184d 03d3 | 4d3b 9718 | 0100 000f | 836c 2300 | 004d 8997 | 0801 0000 | 410f 1882 | c000 0000 
+  0x00001526c575f4c8: 48c7 0301 | 0000 0041 | 0f18 8200 
+
+  0x00001526c575f4d4: ;   {metadata({type array byte})}
+  0x00001526c575f4d4: 0100 00c7 | 4308 4868 | 0000 448b | 5c24 5844 | 895b 0c41 | 0f18 8240 | 0100 0041 | 0f18 8280 
+  0x00001526c575f4f4: 0100 0044 | 8b5c 2458 | 4585 db76 | 3fc5 fa7f | 8424 8000 | 0000 488b | 7c24 5048 | 83c7 1048 
+  0x00001526c575f514: 8bf3 4883 | c610 488b | 5424 1848 | 83c2 f048 | c1ea 03c5 | f877 49ba | c0f0 aec4 | 2615 0000 
+  0x00001526c575f534: 41ff d2c5 | fa6f 8424 | 8000 0000 | 85ed 0f84 | 2c30 0000 | 4180 7f38 | 000f 850e | 1d00 004c 
+  0x00001526c575f554: 8bd3 4d8d | 1cec 4c8b | cb49 c1e9 | 0345 894c | ec10 4d33 | d349 c1ea | 184d 85d2 | 741a 49c1 
+  0x00001526c575f574: eb09 48bf | 0000 f8b5 | 2615 0000 | 4903 fb80 | 3f04 0f85 | c31d 0000 | b91f 0000 
+
+  0x00001526c575f590: ;   {oop([I{0x0000000140006510})}
+  0x00001526c575f590: 0049 ba10 | 6500 4001 | 0000 0041 | 238a 1801 | 0000 4c8b | 1424 458b | 1244 8954 | 242c bd3e 
+  0x00001526c575f5b0: 0000 00d3 | fd83 e501 | 85ed 0f84 | ec39 0000 | b91f 0000 
+
+  0x00001526c575f5c4: ;   {oop([I{0x0000000140006510})}
+  0x00001526c575f5c4: 0049 ba10 | 6500 4001 | 0000 0041 | 238a 3401 | 0000 bd3e | 0200 00d3 | fd83 e501 | 85ed 0f84 
+  0x00001526c575f5e4: 143a 0000 | 4c8b 5424 | 6041 8b6a | 0c45 8b5c 
+
+  0x00001526c575f5f4: ;   {metadata('htsjdk/samtools/BAMRecord')}
+  0x00001526c575f5f4: ec08 4181 | fb00 365e | 010f 8571 | 3000 004d | 8d14 ec4c | 8994 2480 | 0000 0045 | 0fb6 526d 
+  0x00001526c575f614: 4585 d20f | 848d 1d00 | 004c 8b94 | 2480 0000 | 0041 8b4a | 4445 0fbf | 54cc 0c41 | 81fa 4249 
+  0x00001526c575f634: 0000 7506 | 498d 04cc | eb70 4181 | fa42 4900 | 000f 8f2e | 1a00 0045 | 8b44 cc14 
+
+  0x00001526c575f650: ; implicit exception: dispatches to 0x00001526c5764170
+  0x00001526c575f650: 470f bf5c | c40c 4181 | fb42 4900 | 0075 064b | 8d04 c4eb | 4941 81fb | 4249 0000 | 0f8f 071a 
+  0x00001526c575f670: 0000 438b | 6cc4 1485 | ed0f 8451 | 3b00 00c5 | fa7f 8424 | 8000 0000 | 498d 34ec | ba42 4900 
+  0x00001526c575f690: 0066 6690 
+
+  0x00001526c575f694: ;   {optimized virtual_call}
+  0x00001526c575f694: c5f8 77e8 
+
+  0x00001526c575f698: ; ImmutableOopMap {[0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual find {reexecute=0 rethrow=0 return_oop=1}
+                      ; - htsjdk.samtools.SAMBinaryTagAndValue::find@32 (line 245)
+                      ; - htsjdk.samtools.SAMBinaryTagAndValue::find@32 (line 245)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@14 (line 1506)
+                      ; - htsjdk.samtools.BAMRecord::getAttribute@13 (line 393)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@3 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c575f698: a4a7 acff | 4885 c00f | 84cb 1900 | 00c5 fa6f | 8424 8000 | 0000 448b | 5810 4d8b | c349 c1e0 
+  0x00001526c575f6b8: 034d 85c0 | 7411 458b 
+
+  0x00001526c575f6c0: ;   {metadata({type array byte})}
+  0x00001526c575f6c0: 5008 4181 | fa48 6800 | 000f 84b5 | 2e00 004d | 85c0 0f85 | 2606 0000 | 4c8b 5424 | 6041 8b6a 
+  0x00001526c575f6e0: 0c45 8b5c 
+
+  0x00001526c575f6e4: ;   {metadata('htsjdk/samtools/BAMRecord')}
+  0x00001526c575f6e4: ec08 4181 | fb00 365e | 010f 851d | 3500 0048 | c1e5 0344 | 8b55 2c44 | 3b65 700f | 8497 0800 
+  0x00001526c575f704: 0045 85d2 | 0f84 d01c | 0000 4b8d | 1cd4 448b | 5b0c 4489 | 5c24 3849 | 63eb 4181 | fb00 0010 
+  0x00001526c575f724: 000f 87de | 2200 0049 | 8b9f 0801 | 0000 488b | cd48 83c1 | 174c 8bd1 | 4983 e2f8 | 4c8b db4d 
+  0x00001526c575f744: 03da 4d3b | 9f18 0100 | 000f 83b6 | 2200 004d | 899f 0801 | 0000 410f | 1883 c000 | 0000 48c7 
+  0x00001526c575f764: 0301 0000 | 0041 0f18 | 8300 0100 
+
+  0x00001526c575f770: ;   {metadata({type array byte})}
+  0x00001526c575f770: 00c7 4308 | 4868 0000 | 448b 5424 | 3844 8953 | 0c41 0f18 | 8340 0100 | 0048 8bfb | 4883 c710 
+  0x00001526c575f790: 410f 1883 | 8001 0000 | 48c1 e903 | 4883 c1fe | 4833 c048 | 83f9 087f | 1048 ffc9 | 784f 4889 
+  0x00001526c575f7b0: 04cf 48ff | c97d f7eb | 44c5 f5ef | c9e9 0d00 | 0000 c5fe | 7f0f c5fe | 7f4f 2048 | 83c7 4048 
+  0x00001526c575f7d0: 83e9 087d | ed48 83c1 | 047c 0cc5 | fe7f 0f48 | 83c7 2048 | 83e9 0448 | 83c1 047e | 1048 ffc9 
+  0x00001526c575f7f0: c5f9 d60f | 4883 c708 | 48ff c97d | f344 8b5c | 2438 4585 | db0f 86d2 | 0000 0045 | 85db 0f86 
+  0x00001526c575f810: 4032 0000 | 458b d341 | ffca 453b | d30f 8331 | 3200 0044 | 8bdb 4183 | e30f 41b8 | ffff ffff 
+  0x00001526c575f830: 452b c341 | bb04 0000 | 00c4 42a0 | f5d0 4983 | c201 4c3b | d549 0f4c | ea44 8bdd | 33ff c644 
+  0x00001526c575f850: 3b10 2d44 | 8bd7 41ff | c245 3bd3 | 7d05 418b | faeb eb44 | 8b44 2438 | 4183 c0e1 | 453b d00f 
+  0x00001526c575f870: 8d33 3200 | 00ff c744 | 8b5c 2438 | 442b df41 | 83c3 e145 | 33c9 443b | c745 0f4c | d941 81fb 
+  0x00001526c575f890: 007d 0000 | 41ba 007d | 0000 450f | 47da 4403 | df4c 63d7 | c4a1 7a7f | 4413 10c4 | a17a 7f44 
+  0x00001526c575f8b0: 1320 83c7 | 2041 3bfb | 7ce7 4d8b | 9750 0300 
+
+  0x00001526c575f8c0: ; ImmutableOopMap {rbx=Oop [0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.Arrays::fill@17 (line 3286)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@21 (line 842)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+                      ;   {poll}
+  0x00001526c575f8c0: 0041 8502 | 413b f87c | ae3b 7c24 | 387d 0e90 | c644 3b10 | 2dff c73b | 7c24 387c | f344 8b5c 
+  0x00001526c575f8e0: 242c 4585 | db0f 843d | 2e00 0041 | 807f 3800 | 0f85 5f1b | 0000 4c8b | d344 8b44 | 242c 4f8d 
+  0x00001526c575f900: 1cc4 4c8b | c349 c1e8 | 0344 8b4c | 242c 4789 | 44cc 144d | 33d3 49c1 | ea18 4d85 | d274 1a49 
+  0x00001526c575f920: c1eb 0948 | bf00 00f8 | b526 1500 | 0049 03fb | 803f 040f | 8557 1b00 | 00b9 1f00 
+
+  0x00001526c575f93c: ;   {oop([I{0x0000000140006510})}
+  0x00001526c575f93c: 0000 49ba | 1065 0040 | 0100 0000 | 4123 8a18 | 0100 004c | 8b14 2445 | 8b1a 4489 | 5c24 2cbd 
+  0x00001526c575f95c: 3e00 0000 | d3fd 83e5 | 0185 ed0f | 84df 3600 | 00b9 1f00 
+
+  0x00001526c575f970: ;   {oop([I{0x0000000140006510})}
+  0x00001526c575f970: 0000 49ba | 1065 0040 | 0100 0000 | 4123 8a20 | 0100 00bd | 3e02 0000 | d3fd 83e5 | 0185 ed0f 
+  0x00001526c575f990: 8407 3700 | 004c 8b54 | 2460 418b | 6a0c 458b 
+
+  0x00001526c575f9a0: ;   {metadata('htsjdk/samtools/BAMRecord')}
+  0x00001526c575f9a0: 54ec 0841 | 81fa 0036 | 5e01 0f85 | 642e 0000 | 4d8d 14ec | 4c89 9424 | 8000 0000 | 450f b65a 
+  0x00001526c575f9c0: 6d45 85db | 0f84 211b | 0000 4c8b | 9424 8000 | 0000 418b | 4a44 450f | bf5c cc0c | 4181 fb42 
+  0x00001526c575f9e0: 4400 0075 | 0649 8d04 | cceb 6f41 | 81fb 4244 | 0000 0f8f | 9216 0000 | 458b 44cc | 1447 0fbf 
+  0x00001526c575fa00: 54c4 0c41 | 81fa 4244 | 0000 7506 | 4b8d 04c4 | eb48 4181 | fa42 4400 | 000f 8f6b | 1600 0043 
+  0x00001526c575fa20: 8b6c c414 | 85ed 0f84 | fc37 0000 | c5fa 7f84 | 2480 0000 | 0049 8d34 | ecba 4244 | 0000 6690 
+  0x00001526c575fa40: ;   {optimized virtual_call}
+  0x00001526c575fa40: c5f8 77e8 
+
+  0x00001526c575fa44: ; ImmutableOopMap {[0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual find {reexecute=0 rethrow=0 return_oop=1}
+                      ; - htsjdk.samtools.SAMBinaryTagAndValue::find@32 (line 245)
+                      ; - htsjdk.samtools.SAMBinaryTagAndValue::find@32 (line 245)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@14 (line 1506)
+                      ; - htsjdk.samtools.BAMRecord::getAttribute@13 (line 393)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@3 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c575fa44: 3886 3aff | 4885 c00f | 8430 1600 | 00c5 fa6f | 8424 8000 | 0000 448b | 5010 4d8b | c249 c1e0 
+  0x00001526c575fa64: 034d 85c0 | 7411 458b 
+
+  0x00001526c575fa6c: ;   {metadata({type array byte})}
+  0x00001526c575fa6c: 5808 4181 | fb48 6800 | 000f 84bd | 2c00 004d | 85c0 0f84 | 19f1 ffff | 458b 5808 
+
+  0x00001526c575fa88: ;   {metadata('java/lang/String')}
+  0x00001526c575fa88: 4181 fb20 | ec00 000f | 8515 3300 | 0045 8b58 | 1443 8b6c | dc0c 450f | be48 1044 | 894c 2418 
+  0x00001526c575faa8: 448b d541 | 8bc9 41d3 | fa44 8954 | 241c 4181 | fa00 0010 | 000f 870b | 3200 0049 | 63ca 4181 
+  0x00001526c575fac8: fa00 0010 | 000f 8766 | 1f00 0049 | 8b9f 0801 | 0000 4883 | c117 4c8b | d149 83e2 | f84c 8bcb 
+  0x00001526c575fae8: 4d03 ca4d | 3b8f 1801 | 0000 0f83 | 411f 0000 | 4d89 8f08 | 0100 0041 | 0f18 81c0 | 0000 0048 
+  0x00001526c575fb08: c703 0100 | 0000 410f | 1881 0001 
+
+  0x00001526c575fb14: ;   {metadata({type array byte})}
+  0x00001526c575fb14: 0000 c743 | 0848 6800 | 0044 8b54 | 241c 4489 | 530c 410f | 1881 4001 | 0000 488b | fb48 83c7 
+  0x00001526c575fb34: 1041 0f18 | 8180 0100 | 0048 c1e9 | 0348 83c1 | fe48 33c0 | 4883 f908 | 7f10 48ff | c978 4f48 
+  0x00001526c575fb54: 8904 cf48 | ffc9 7df7 | eb44 c5f5 | efc9 e90d | 0000 00c5 | fe7f 0fc5 | fe7f 4f20 | 4883 c740 
+  0x00001526c575fb74: 4883 e908 | 7ded 4883 | c104 7c0c | c5fe 7f0f | 4883 c720 | 4883 e904 | 4883 c104 | 7e10 48ff 
+  0x00001526c575fb94: c9c5 f9d6 | 0f48 83c7 | 0848 ffc9 | 7df3 448b | 4c24 1c41 | 8bf9 4585 | c90f 8efd | f1ff ff44 
+  0x00001526c575fbb4: 8b54 2418 | 4585 d20f | 856f 3100 | 0085 ed0f | 8667 3100 | 0041 ffc9 | 443b cd0f | 835b 3100 
+  0x00001526c575fbd4: 0085 ff0f | 8453 3100 | 0044 3bcf | 0f83 4a31 | 0000 470f | b64c dc10 | 458b d141 | 83c2 df41 
+  0x00001526c575fbf4: 83fa 5e0f | 838a 3600 | 0044 8853 | 104b 8d04 | dc8b d783 | c2fd 83fa | 010f 8e8d | 3100 00b9 
+  0x00001526c575fc14: 0100 0000 | 8bf7 2bf1 | 83c6 fd45 | 33db 3bd1 | 410f 4cf3 | 81fe a00f | 0000 41bb | a00f 0000 
+  0x00001526c575fc34: 410f 47f3 | 03f1 660f | 1f44 0000 | 4863 e944 | 0fb6 4c28 | 1045 8bd1 | 4183 c2df | 4183 fa5e 
+  0x00001526c575fc54: 0f83 be14 | 0000 4488 | 542b 1044 | 0fb6 4c28 | 1145 8bd9 | 4183 c3df | 4183 fb5e | 0f83 9614 
+  0x00001526c575fc74: 0000 4488 | 5c2b 1144 | 0fb6 4c28 | 1245 8bd1 | 4183 c2df | 4183 fa5e | 0f83 7e14 | 0000 4488 
+  0x00001526c575fc94: 542b 1244 | 0fb6 4c28 | 1345 8bd9 | 4183 c3df | 4183 fb5e | 0f83 6714 | 0000 4488 | 5c2b 1383 
+  0x00001526c575fcb4: c104 3bce | 7c86 4d8b | 9750 0300 
+
+  0x00001526c575fcc0: ; ImmutableOopMap {r8=Oop rbx=Oop rax=Oop [0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMUtils::fastqToPhred@37 (line 402)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@8 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+                      ;   {poll}
+  0x00001526c575fcc0: 0041 8502 | 3bca 0f8c | 4cff ffff | 3bcf 0f8d | dcf0 ffff | 4c63 d146 | 0fb6 4c10 | 1045 8bd9 
+  0x00001526c575fce0: 4183 c3df | 4183 fb5e | 0f83 2a14 | 0000 4688 | 5c13 10ff | c13b cf7c | dbe9 b2f0 | ffff 458b 
+  0x00001526c575fd00: ;   {metadata('java/lang/String')}
+  0x00001526c575fd00: 5008 4181 | fa20 ec00 | 000f 85a5 | 2e00 0045 | 8b50 1443 | 8b6c d40c | 450f be58 | 1044 895c 
+  0x00001526c575fd20: 2418 448b | cd41 8bcb | 41d3 f944 | 894c 241c | 4181 f900 | 0010 000f | 870f 2d00 | 0049 63c9 
+  0x00001526c575fd40: 4181 f900 | 0010 000f | 875f 1c00 | 0049 8b9f | 0801 0000 | 4883 c117 | 4c8b d949 | 83e3 f84c 
+  0x00001526c575fd60: 8bcb 4d03 | cb4d 3b8f | 1801 0000 | 0f83 3a1c | 0000 4d89 | 8f08 0100 | 0041 0f18 | 81c0 0000 
+  0x00001526c575fd80: 0048 c703 | 0100 0000 | 410f 1881 | 0001 0000 
+
+  0x00001526c575fd90: ;   {metadata({type array byte})}
+  0x00001526c575fd90: c743 0848 | 6800 008b | 7c24 1c89 | 7b0c 410f | 1881 4001 | 0000 488b | fb48 83c7 | 1041 0f18 
+  0x00001526c575fdb0: 8180 0100 | 0048 c1e9 | 0348 83c1 | fe48 33c0 | 4883 f908 | 7f10 48ff | c978 4f48 | 8904 cf48 
+  0x00001526c575fdd0: ffc9 7df7 | eb44 c5f5 | efc9 e90d | 0000 00c5 | fe7f 0fc5 | fe7f 4f20 | 4883 c740 | 4883 e908 
+  0x00001526c575fdf0: 7ded 4883 | c104 7c0c | c5fe 7f0f | 4883 c720 | 4883 e904 | 4883 c104 | 7e10 48ff | c9c5 f9d6 
+  0x00001526c575fe10: 0f48 83c7 | 0848 ffc9 | 7df3 448b | 5c24 1c41 | 8bfb 4585 | db0f 8eb2 | faff ff44 | 8b4c 2418 
+  0x00001526c575fe30: 4585 c90f | 8577 2c00 | 0085 ed0f | 866f 2c00 | 0041 ffcb | 443b dd0f | 8363 2c00 | 0085 ff0f 
+  0x00001526c575fe50: 845b 2c00 | 0044 3bdf | 0f83 522c | 0000 470f | b64c d410 | 418b c983 | c1df 83f9 | 5e0f 830d 
+  0x00001526c575fe70: 3400 0088 | 4b10 4b8d | 04d4 8bd7 | 83c2 fd83 | fa01 0f8e | 982c 0000 | b901 0000 | 008b f72b 
+  0x00001526c575fe90: f183 c6fd | 4533 d23b | d141 0f4c | f281 fea0 | 0f00 0041 | baa0 0f00 | 0041 0f47 | f203 f190 
+  0x00001526c575feb0: 4863 e944 | 0fb6 4c28 | 1045 8bd1 | 4183 c2df | 4183 fa5e | 0f83 e811 | 0000 4488 | 542b 1044 
+  0x00001526c575fed0: 0fb6 4c28 | 1145 8bd9 | 4183 c3df | 4183 fb5e | 0f83 c011 | 0000 4488 | 5c2b 1144 | 0fb6 4c28 
+  0x00001526c575fef0: 1245 8bd1 | 4183 c2df | 4183 fa5e | 0f83 a811 | 0000 4488 | 542b 1244 | 0fb6 4c28 | 1345 8bd9 
+  0x00001526c575ff10: 4183 c3df | 4183 fb5e | 0f83 9111 | 0000 4488 | 5c2b 1383 | c104 3bce | 7c86 4d8b | 9750 0300 
+  0x00001526c575ff30: ; ImmutableOopMap {r8=Oop rbx=Oop rax=Oop [0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMUtils::fastqToPhred@37 (line 402)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@8 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+                      ;   {poll}
+  0x00001526c575ff30: 0041 8502 | 3bca 0f8c | 51ff ffff | 3bcf 0f8d | 99f9 ffff | 4c63 d146 | 0fb6 4c10 | 1041 8bd1 
+  0x00001526c575ff50: 83c2 df83 | fa5e 0f83 | 5611 0000 | 4288 5413 | 10ff c13b | cf7c dde9 | 71f9 ffff | 4d8b da49 
+  0x00001526c575ff70: c1e3 034c | 895c 2450 | 4585 d20f | 85e5 f4ff | ff4c 891c | 24be 45ff | ffff 4c8b | 5424 304c 
+  0x00001526c575ff90: 8954 2428 
+
+  0x00001526c575ff94: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c575ff94: c5f8 77e8 
+
+  0x00001526c575ff98: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [16]=Oop [40]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualities@9 (line 289)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@126 (line 124)
+  0x00001526c575ff98: 64d6 3aff | 498b da48 | c1e3 0345 | 85d2 0f85 | 66f7 ffff | 488b ebbe | 45ff ffff | 4c8b 5424 
+  0x00001526c575ffb8: 084c 8914 | 244c 8b54 | 2410 4c89 | 5424 0844 | 8b5c 2420 | 4489 5c24 | 1844 8b54 | 2424 4489 
+  0x00001526c575ffd8: 5424 1c4c | 8b54 2430 | 4c89 5424 | 2066 6690 
+
+  0x00001526c575ffe8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c575ffe8: c5f8 77e8 
+
+  0x00001526c575ffec: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualityCount@9 (line 301)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@10 (line 841)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c575ffec: 10d6 3aff | 498b db48 | c1e3 0345 | 85db 0f85 | d7eb ffff | 488b ebbe | 45ff ffff | 4c8b 5424 
+  0x00001526c576000c: 084c 8914 | 244c 8b54 | 2410 4c89 | 5424 0844 | 8b5c 2420 | 4489 5c24 | 1844 8b54 | 2424 4489 
+  0x00001526c576002c: 5424 1c4c | 8b54 2430 | 4c89 5424 | 2066 6690 
+
+  0x00001526c576003c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576003c: c5f8 77e8 
+
+  0x00001526c5760040: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualityCount@9 (line 301)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@10 (line 857)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5760040: bcd5 3aff | 4c8b 7424 | 088b 5c24 | 204c 8b44 | 2410 448b | 5c24 244c | 8b4c 2430 | 488b ac24 
+  0x00001526c5760060: a800 0000 | 8bb4 24b0 | 0000 008b | d341 0faf | d381 fa00 | 0002 000f | 8787 3700 | 0048 63ca 
+  0x00001526c5760080: 81fa 0000 | 0200 0f87 | 041f 0000 | 4d8b af08 | 0100 004d | 8d54 cd10 | 4d3b 9718 | 0100 000f 
+  0x00001526c57600a0: 83eb 1e00 | 004d 8997 | 0801 0000 | 410f 1882 | c000 0000 | 49c7 4500 | 0100 0000 | 410f 1882 
+  0x00001526c57600c0: 0001 0000 
+
+  0x00001526c57600c4: ;   {metadata({type array double})}
+  0x00001526c57600c4: 41c7 4508 | 5066 0000 | 4189 550c | 410f 1882 | 4001 0000 | 498b fd48 | 83c7 1041 | 0f18 8280 
+  0x00001526c57600e4: 0100 0048 | 83c1 0249 | baff ffff | ffff ffff | 1f49 23ca | 4883 c1fe | 4833 c048 | 83f9 087f 
+  0x00001526c5760104: 1048 ffc9 | 784f 4889 | 04cf 48ff | c97d f7eb | 44c5 fdef | c0e9 0d00 | 0000 c5fe | 7f07 c5fe 
+  0x00001526c5760124: 7f47 2048 | 83c7 4048 | 83e9 087d | ed48 83c1 | 047c 0cc5 | fe7f 0748 | 83c7 2048 | 83e9 0448 
+  0x00001526c5760144: 83c1 047e | 1048 ffc9 | c5f9 d607 | 4883 c708 | 48ff c97d | f341 807f | 3800 0f85 | 9c17 0000 
+  0x00001526c5760164: 4d8b d549 | c1ea 0345 | 8956 444d | 8bd6 498b | cd49 33ca | 48c1 e918 | 4885 c974 | 1149 c1ea 
+  0x00001526c5760184: 0949 03ea | 807d 0004 | 0f85 a517 
+
+  0x00001526c5760190: ;   {oop(a 'java/lang/Class'{0x0000000140f8ea28} = 'org/broadinstitute/hellbender/utils/pairhmm/PairHMM')}
+  0x00001526c5760190: 0000 49ba | 28ea f840 | 0100 0000 | 418b 4a74 
+
+  0x00001526c57601a0: ; implicit exception: dispatches to 0x00001526c576458c
+  0x00001526c57601a0: 410f b66c | cc0c 85ed | 0f84 c837 | 0000 8934 | 244c 894c | 2418 4489 | 5c24 144c | 8944 2440 
+  0x00001526c57601c0: 895c 2410 | 4c89 7424 | 38c5 f877 | 49ba 80a8 | bbda 2615 | 0000 41ff | d249 2b46 | 1849 8946 
+  0x00001526c57601e0: 6045 8b56 | 5c45 8b5e | 7441 8b6e | 4447 8b44 
+
+  0x00001526c57601f0: ;   {metadata('com/intel/gkl/pairhmm/IntelPairHmmOMP')}
+  0x00001526c57601f0: d408 4181 | f8b0 6a5d | 010f 852d | 3600 0045 | 85db 0f84 | 0436 0000 | 85ed 0f84 | fc35 0000 
+  0x00001526c5760210: 4b8d 34d4 | 4b8d 0cdc | 4d8d 04ec | 488b 5424 | 1866 6690 
+
+  0x00001526c5760224: ;   {optimized virtual_call}
+  0x00001526c5760224: c5f8 77e8 
+
+  0x00001526c5760228: ; ImmutableOopMap {[24]=Oop [56]=Oop [64]=Oop }
+                      ;*invokespecial computeLikelihoodsNative {reexecute=0 rethrow=0 return_oop=0}
+                      ; - com.intel.gkl.pairhmm.IntelPairHmm::computeLikelihoods@26 (line 138)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@231 (line 138)
+  0x00001526c5760228: 14ff eaff | 448b 5424 | 1045 85d2 | 0f8e 4b0d | 0000 4533 | db45 33c9 | eb22 448b | 5c24 5041 
+  0x00001526c5760248: ffc3 443b | 5c24 100f | 8d30 0d00 | 0044 8b4c | 2420 4403 | 4c24 1444 | 8b54 2410 | 488b 4c24 
+  0x00001526c5760268: 4044 8b41 | 1047 8b44 | c434 438b | 7cc4 084b 
+
+  0x00001526c5760278: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c5760278: 8d1c c481 | ffa0 5e2c 
+
+  0x00001526c5760280: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5760280: 0174 5881 | ff18 612c | 010f 85cd | 3000 0049 | 8b87 0801 | 0000 4c8b | c049 83c0 | 184d 3b87 
+  0x00001526c57602a0: 1801 0000 | 0f83 1b18 | 0000 4d89 | 8708 0100 | 0041 0f18 | 80c0 0000 | 0048 c700 | 0100 0000 
+  0x00001526c57602c0: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleList$2')}
+  0x00001526c57602c0: c740 0858 | 4b2c 0144 | 8960 0c4c | 8960 1048 | 8be8 48c1 | eb03 8958 | 10eb 4e49 | 8b87 0801 
+  0x00001526c57602e0: 0000 4c8b | c049 83c0 | 184d 3b87 | 1801 0000 | 0f83 c715 | 0000 4d89 | 8708 0100 | 0041 0f18 
+  0x00001526c5760300: 80c0 0000 | 0048 c700 | 0100 0000 
+
+  0x00001526c576030c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleList$2')}
+  0x00001526c576030c: c740 0858 | 4b2c 0144 | 8960 0c4c | 8960 1048 | 8be8 4c8b | c349 c1e8 | 0344 8940 | 108b 5d08 
+  0x00001526c576032c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleList$2')}
+  0x00001526c576032c: 81fb 584b | 2c01 0f85 | 9023 0000 | 498b 8708 | 0100 004c | 8bc0 4983 | c020 4d3b | 8718 0100 
+  0x00001526c576034c: 000f 8302 | 1500 004d | 8987 0801 | 0000 410f | 1880 c000 | 0000 48c7 | 0001 0000 
+
+  0x00001526c5760368: ;   {metadata('java/util/AbstractList$Itr')}
+  0x00001526c5760368: 00c7 4008 | 90f9 1501 | 4489 600c | 4c89 6018 | 4489 5424 | 1048 894c | 2440 4489 | 5c24 5044 
+  0x00001526c5760388: 894c 2420 | 41ba ffff | ffff 4c89 | 5010 4c8b | d844 8b45 | 0c44 8940 | 1445 8b53 | 084c 8bcd 
+  0x00001526c57603a8: 49c1 e903 | 4489 4818 
+
+  0x00001526c57603b0: ;   {metadata('java/util/AbstractList$Itr')}
+  0x00001526c57603b0: 4181 fa90 | f915 010f | 852f 2300 | 0044 8b55 | 1047 8b44 | d408 458b | 4b0c 4489 | 4c24 484c 
+  0x00001526c57603d0: 895c 2430 | 4f8d 1cd4 
+
+  0x00001526c57603d8: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c57603d8: 4181 f8a0 | 5e2c 010f | 85de 0a00 | 0045 8b5b | 0c43 8b6c | dc0c 458b 
+
+  0x00001526c57603f0: ;   {metadata('java/util/ArrayList')}
+  0x00001526c57603f0: 54ec 0841 | 81fa 40e1 | 0000 0f85 | a825 0000 | 4d8d 14ec | 418b 4210 | 8b4c 2448 | 3bc8 0f84 
+  0x00001526c5760410: 2efe ffff | 448b 4c24 | 5044 3b4c | 2410 0f83 | 9c25 0000 | 4533 d2e9 | c403 0000 | 498b f290 
+  0x00001526c5760430: ;   {optimized virtual_call}
+  0x00001526c5760430: c5f8 77e8 
+
+  0x00001526c5760434: ; ImmutableOopMap {rbp=Oop [24]=Oop [48]=Oop [56]=Oop [64]=Oop [72]=Oop [96]=Oop }
+                      ;*invokevirtual equals {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.HashMap::getNode@128 (line 577)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c5760434: 487c 3aff | 85c0 0f85 | ee01 0000 | 4d8b 9750 | 0300 0044 
+
+  0x00001526c5760448: ; ImmutableOopMap {r11=NarrowOop [24]=Oop [48]=Oop [56]=Oop [64]=Oop [72]=Oop [96]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.HashMap::getNode@145 (line 579)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+                      ;   {poll}
+  0x00001526c5760448: 8b5d 1841 | 8502 4585 | db0f 848f | 1b00 004b | 8d2c dce9 | a601 0000 | 470f be4c | 0210 8bd6 
+  0x00001526c5760468: c1e2 052b | d641 03d1 | 41ff c044 | 3bc3 0f8d | 2601 0000 | 8bf2 ebe0 | c5f9 7ecf | c4c1 797e 
+  0x00001526c5760488: c3c5 f97e | dbc4 e1f9 | 7ed0 8bcb | 412b c883 | c1f9 33f6 | 453b e80f | 4cce 81f9 | 401f 0000 
+  0x00001526c57604a8: ba40 1f00 | 000f 47ca | 4103 c8c5 | f96e cfc4 | c179 6ec3 | c5f9 6edb | c4e1 f96e | d066 6666 
+  0x00001526c57604c8: 0f1f 8400 | 0000 0000 | 4d63 f047 | 0fbe 5c32 | 1043 0fbe | 7c32 1743 | 0fbe 5c32 | 1143 0fbe 
+  0x00001526c57604e8: 7432 1643 | 0fbe 5432 | 1543 0fbe | 6c32 1443 | 0fbe 4432 | 1347 0fbe | 7432 1245 | 03cb 458b 
+  0x00001526c5760508: d941 c1e3 | 0545 2bd9 | 4403 db45 | 8bcb 41c1 | e105 452b | cb45 03ce | 418b d9c1 | e305 412b 
+  0x00001526c5760528: d903 d844 | 8bdb 41c1 | e305 442b | db44 03dd | 418b dbc1 | e305 412b | db03 da44 | 8bdb 41c1 
+  0x00001526c5760548: e305 442b | db44 03de | 418b f3c1 | e605 412b | f303 f744 | 8bce 41c1 | e105 442b | ce41 83c0 
+  0x00001526c5760568: 0844 3bc1 | 0f8c 5eff | ffff 4d8b | 9f50 0300 
+
+  0x00001526c5760578: ; ImmutableOopMap {r10=Oop xmm0=NarrowOop xmm2=Oop [24]=Oop [48]=Oop [56]=Oop [64]=Oop [72]=Oop [96]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.Arrays::hashCode@39 (line 4383)
+                      ; - org.broadinstitute.hellbender.utils.haplotype.Haplotype::hashCode@4 (line 173)
+                      ; - java.util.HashMap::hash@9 (line 338)
+                      ; - java.util.HashMap::getNode@23 (line 568)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+                      ;   {poll}
+  0x00001526c5760578: 0041 8503 | 453b c50f | 8cfb feff | ffc5 f97e | cfc4 c179 | 7ec3 c5f9 | 7edb c4e1 | f97e d044 
+  0x00001526c5760598: 3bc3 0f8c | c0fe ffff | 8bd6 448b | c241 c1e8 | 1044 33c2 | 4123 f88b | 54b8 1045 | 8b4c d40c 
+  0x00001526c57605b8: 453b c875 | 2045 8b54 | d410 4d8b | ca49 c1e1 | 0348 8b4c | 2460 4c3b | c90f 851e | 0700 0049 
+  0x00001526c57605d8: 8d2c d4eb | 5145 8b5c | d418 4585 | db0f 84fb | 1900 0045 | 8b4c d408 
+
+  0x00001526c57605f0: ;   {metadata('java/util/HashMap$TreeNode')}
+  0x00001526c57605f0: 4181 f978 | 5413 000f | 842b 1a00 | 004b 8d2c | dc44 8944 | 245c 448b | 550c 443b | 5424 5c0f 
+  0x00001526c5760610: 852b feff | ff44 8b55 | 1049 8bd2 | 48c1 e203 | 4c8b 5424 | 6049 3bd2 | 0f85 fefd | ffff 4c8b 
+  0x00001526c5760630: 5424 4845 | 0fb6 422c | 4585 c00f | 857f 1b00 | 0044 8b55 | 1447 8b5c 
+
+  0x00001526c5760648: ;   {metadata('java/lang/Integer')}
+  0x00001526c5760648: d408 4181 | fbc8 1304 | 000f 856d | 3500 004c | 8b5c 2438 | 418b 5b44 | 49c1 e203 | 458b 4a0c 
+  0x00001526c5760668: 418b d103 | 5424 2045 | 8b54 dc0c | 413b d20f | 83d4 1400 | 004c 8b54 | 2440 458b | 5210 478b 
+  0x00001526c5760688: 44d4 244c | 8b5c 2440 | 458b 5b0c 
+
+  0x00001526c5760694: ; implicit exception: dispatches to 0x00001526c5763cb0
+  0x00001526c5760694: 438b 4cc4 | 0c48 c1e3 | 03c5 fb10 | 44d3 1044 | 3bd9 0f83 | 1415 0000 | 49c1 e003 | 438b 7498 
+  0x00001526c57606b4: 1045 8b44 | f40c 8b4c | 2458 413b | c80f 8321 | 1b00 0047 | 8b54 d42c 
+
+  0x00001526c57606cc: ; implicit exception: dispatches to 0x00001526c5763cd0
+  0x00001526c57606cc: 438b 4cd4 | 0c44 3bd9 | 0f83 5e15 | 0000 49c1 | e203 478b | 549a 1044 | 8b44 2450 | 453b c20f 
+  0x00001526c57606ec: 8d67 1b00 | 004d 8d14 | f444 8b5c | 2458 478b | 549a 1047 | 8b5c d40c | 453b c30f | 83a3 1500 
+  0x00001526c576070c: 004c 8b5c | 2418 438b | 7483 1049 | c1e2 03c4 | 817b 1144 | c210 458b | 54f4 0c45 | 8b5c f41c 
+  0x00001526c576072c: 4c8b 4424 | 6041 0fb6 | 400e 418b | 4cf4 1045 | 8b44 f418 | 418b 7cf4 | 1485 c00f | 857f 1b00 
+  0x00001526c576074c: 004c 8b4c | 2438 458b | 4940 4585 | c90f 85dd | 1b00 004d | 8b9f 5003 | 0000 4c8b | 4c24 3045 
+  0x00001526c576076c: 8b51 188b | 5c24 58ff 
+
+  0x00001526c5760774: ; ImmutableOopMap {r10=NarrowOop r9=Oop [24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@388 (line 151)
+                      ;   {poll}
+  0x00001526c5760774: c341 8503 
+
+  0x00001526c5760778: ; implicit exception: dispatches to 0x00001526c5763d08
+  0x00001526c5760778: 478b 44d4 | 0889 5c24 | 2845 8b59 | 0c44 895c | 2448 4f8d 
+
+  0x00001526c576078c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleList$2')}
+  0x00001526c576078c: 1cd4 4181 | f858 4b2c | 010f 8542 | 0300 0045 | 8b53 1047 | 8b5c d408 | 4f8d 04d4 
+
+  0x00001526c57607a8: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c57607a8: 4181 fba0 | 5e2c 010f | 8567 0200 | 0045 8b58 | 0c47 8b54 | dc0c 478b 
+
+  0x00001526c57607c0: ;   {metadata('java/util/ArrayList')}
+  0x00001526c57607c0: 5cd4 0841 | 81fb 40e1 | 0000 0f85 | 7c17 0000 | 49c1 e203 | 418b 4210 | 448b 5c24 | 4844 3bd8 
+  0x00001526c57607e0: 0f84 5cfa | ffff 448b | 4c24 5044 | 8b54 2428 | 488b 4c24 | 3044 8b41 | 1847 8b5c | c40c 4489 
+  0x00001526c5760800: 5424 5844 | 894c 2450 | 448b 4914 | 453b d90f | 85eb 1800 | 0047 8b5c | c408 448b | 490c 4489 
+  0x00001526c5760820: 4c24 4c4f 
+
+  0x00001526c5760824: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleList$2')}
+  0x00001526c5760824: 8d14 c441 | 81fb 584b | 2c01 0f85 | 8a04 0000 | 458b 5a10 
+
+  0x00001526c5760838: ; implicit exception: dispatches to 0x00001526c5763d18
+  0x00001526c5760838: 478b 54dc | 084f 8d0c 
+
+  0x00001526c5760840: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c5760840: dc41 81fa | a05e 2c01 | 0f85 c302 | 0000 458b | 590c 478b | 44dc 0c47 | 8b54 c408 
+
+  0x00001526c576085c: ;   {metadata('java/util/ArrayList')}
+  0x00001526c576085c: 4181 fa40 | e100 000f | 852b 1600 | 004b 8d0c | c444 8b41 | 1044 8b5c | 244c 4585 | db0f 8c15 
+  0x00001526c576087c: 1b00 0045 | 3bd8 0f8d | 681b 0000 | 4585 c00f | 8c5f 1600 | 0045 8bcb | 453b c80f | 8359 1500 
+  0x00001526c576089c: 0044 8b41 | 1447 8b5c | c40c 453b | cb0f 83a1 | 1500 004f | 8d14 c447 | 8b44 8a10 
+
+  0x00001526c57608b8: ; implicit exception: dispatches to 0x00001526c5763e18
+  0x00001526c57608b8: 478b 54c4 | 0848 be00 | 0000 1f26 | 1500 0049 | 03f2 4c8b 
+
+  0x00001526c57608cc: ;   {metadata('htsjdk/variant/variantcontext/Allele')}
+  0x00001526c57608cc: 5620 49bb | b0dd 1c20 | 2615 0000 | 4d3b d30f | 85cf 0000 | 004b 8d04 | c44c 8b44 | 2430 448b 
+  0x00001526c57608ec: 5c24 4c45 | 8958 1041 | ffc3 4589 | 580c 448b 
+
+  0x00001526c57608fc: ;   {metadata('org/broadinstitute/hellbender/utils/haplotype/Haplotype')}
+  0x00001526c57608fc: 5808 4181 | fb68 bd29 | 010f 85f1 | 3100 004c | 8b54 2438 | 458b 4a70 
+
+  0x00001526c5760914: ; implicit exception: dispatches to 0x00001526c5763c80
+  0x00001526c5760914: 478b 5ccc 
+
+  0x00001526c5760918: ;   {metadata('java/util/LinkedHashMap')}
+  0x00001526c5760918: 0841 81fb | 78fc 0a00 | 0f85 f213 | 0000 4889 | 4424 604f | 8d1c cc45 | 8b53 244c | 895c 2448 
+  0x00001526c5760938: ; implicit exception: dispatches to 0x00001526c5761fe6
+  0x00001526c5760938: 438b 7cd4 | 0c85 ff0f | 8653 1700 | 0044 0fb6 | 480e ffcf | 4585 c90f | 85ef 1700 | 0044 8b58 
+  0x00001526c5760958: 1043 8b5c | dc0c 4b8d | 04d4 85db | 0f86 4e05 | 0000 448b | cb41 ffc9 | 443b cb0f | 83ef 1300 
+  0x00001526c5760978: 0043 0fbe | 74dc 104f | 8d14 dc44 | 8beb 4183 | c5f9 4183 | fd01 0f8e | 5414 0000 | 448b ce41 
+  0x00001526c5760998: c1e1 0544 | 2bce 4181 | c1c1 0300 | 0041 b801 | 0000 00e9 | e2fa ffff 
+
+  0x00001526c57609b0: ;   {metadata('htsjdk/variant/variantcontext/Allele')}
+  0x00001526c57609b0: 48b8 b0dd | 1c20 2615 | 0000 488b | 7e28 8b0f | 4883 c708 | 4885 c0f2 | 48af 0f85 | 0400 0000 
+  0x00001526c57609d0: 4889 4620 | 0f84 07ff | ffff bede | ffff ff48 | 8b6c 2438 | 448b 5424 | 1044 8954 | 2408 448b 
+  0x00001526c57609f0: 5c24 1444 | 895c 240c | 4c8b 5424 | 184c 8954 | 2410 448b | 5c24 2044 | 895c 2418 | 4489 4424 
+  0x00001526c5760a10: 3866 6690 
+
+  0x00001526c5760a14: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5760a14: c5f8 77e8 
+
+  0x00001526c5760a18: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [56]=NarrowOop [64]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@20 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5760a18: e4cb 3aff 
+
+  0x00001526c5760a1c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5760a1c: 4181 fb18 | 612c 010f | 85df 1f00 | 0045 8b50 | 1043 8b6c | d434 458b | 5cec 084d 
+
+  0x00001526c5760a38: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c5760a38: 8d14 ec41 | 81fb a05e | 2c01 7471 
+
+  0x00001526c5760a44: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5760a44: 4181 fb18 | 612c 010f | 853d 2800 | 0045 8b5a | 1043 8b6c | dc34 458b | 54ec 0849 
+
+  0x00001526c5760a60: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c5760a60: 8d34 ec41 | 81fa a05e | 2c01 7421 
+
+  0x00001526c5760a6c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5760a6c: 4181 fa18 | 612c 010f | 8597 2c00 | 008b 6c24 | 4866 6690 
+
+  0x00001526c5760a80: ;   {optimized virtual_call}
+  0x00001526c5760a80: c5f8 77e8 
+
+  0x00001526c5760a84: ; ImmutableOopMap {[24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5760a84: f875 3aff | e94b fdff | ff44 8b5e | 0c43 8b6c | dc0c 458b 
+
+  0x00001526c5760a98: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5760a98: 54ec 0841 | 81fa 40e1 | 0000 0f85 | 942a 0000 | 4d8d 14ec | 418b 4210 | e923 fdff | ff45 8b52 
+  0x00001526c5760ab8: 0c43 8b6c | d40c 458b 
+
+  0x00001526c5760ac0: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5760ac0: 5cec 0841 | 81fb 40e1 | 0000 0f85 | ac26 0000 | 4d8d 14ec | 418b 4210 | e9fb fcff 
+
+  0x00001526c5760adc: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/SampleList$2')}
+  0x00001526c5760adc: ff41 81f8 | 1055 2c01 | 0f85 0226 | 0000 458b | 5310 498b | f248 c1e6 | 038b 6c24 | 4890 c5f8 
+  0x00001526c5760afc: 7748 b8ff | ffff ffff 
+
+  0x00001526c5760b04: ;   {virtual_call}
+  0x00001526c5760b04: ffff ffe8 
+
+  0x00001526c5760b08: ; ImmutableOopMap {[24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface numberOfSamples {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.SampleList$2::size@4 (line 115)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5760b08: 7478 3aff | e9c7 fcff 
+
+  0x00001526c5760b10: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5760b10: ff41 81fa | 1861 2c01 | 0f85 1226 | 0000 458b | 5910 478b | 54dc 3447 | 8b5c d408 | 4f8d 04d4 
+  0x00001526c5760b30: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c5760b30: 4181 fba0 | 5e2c 010f | 84e6 0000 
+
+  0x00001526c5760b3c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5760b3c: 0041 81fb | 1861 2c01 | 0f85 4628 | 0000 458b | 5010 438b | 6cd4 3445 | 8b5c ec08 | 4d8d 0cec 
+  0x00001526c5760b5c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c5760b5c: 4181 fba0 | 5e2c 0174 
+
+  0x00001526c5760b64: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5760b64: 2441 81fb | 1861 2c01 | 0f85 462c | 0000 498b | f18b 5424 | 4c8b ea90 
+
+  0x00001526c5760b7c: ;   {optimized virtual_call}
+  0x00001526c5760b7c: c5f8 77e8 
+
+  0x00001526c5760b80: ; ImmutableOopMap {[24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface getAllele {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5760b80: fc74 3aff | e95c fdff | ff45 8b51 | 0c43 8b6c | d40c 458b 
+
+  0x00001526c5760b94: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5760b94: 5cec 0841 | 81fb 40e1 | 0000 0f85 | c82a 0000 | 498d 0cec | 8b69 1044 | 8b54 244c | 4585 d20f 
+  0x00001526c5760bb4: 8cbb 2c00 | 0044 3bd5 | 0f8d ee2c | 0000 85ed | 0f8c d62a | 0000 443b | d50f 8341 | 2a00 0044 
+  0x00001526c5760bd4: 8b41 1441 | 8bea 478b | 5cc4 0c41 | 3beb 0f83 | 5c2a 0000 | 4f8d 14c4 | 418b 6caa | 1045 8b54 
+  0x00001526c5760bf4: ec08 48be | 0000 001f | 2615 0000 | 4903 f24c 
+
+  0x00001526c5760c04: ;   {metadata('htsjdk/variant/variantcontext/Allele')}
+  0x00001526c5760c04: 8b56 2049 | bbb0 dd1c | 2026 1500 | 004d 3bd3 | 0f85 1604 | 0000 498d | 04ec e9c2 | fcff ff45 
+  0x00001526c5760c24: 8b58 0c43 | 8b6c dc0c 
+
+  0x00001526c5760c2c: ; implicit exception: dispatches to 0x00001526c576430c
+  0x00001526c5760c2c: 458b 54ec 
+
+  0x00001526c5760c30: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5760c30: 0841 81fa | 40e1 0000 | 0f85 b626 | 0000 4d8d | 0cec 418b | 6910 448b | 5c24 4c45 | 85db 0f8c 
+  0x00001526c5760c50: f828 0000 | 443b dd0f | 8d2f 2900 | 0085 ed0f | 8cc3 2600 | 0044 3bdd | 0f83 2e26 | 0000 458b 
+  0x00001526c5760c70: 4914 418b | eb47 8b54 | cc0c 413b | ea0f 8349 | 2600 004f | 8d14 cc41 | 8b6c aa10 
+
+  0x00001526c5760c8c: ; implicit exception: dispatches to 0x00001526c576435c
+  0x00001526c5760c8c: 458b 5cec | 0848 be00 | 0000 1f26 | 1500 0049 | 03f3 4c8b 
+
+  0x00001526c5760ca0: ;   {metadata('htsjdk/variant/variantcontext/Allele')}
+  0x00001526c5760ca0: 5620 49bb | b0dd 1c20 | 2615 0000 | 4d3b d30f | 8538 0300 | 0049 8d04 | ece9 27fc 
+
+  0x00001526c5760cbc: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/SampleList$2')}
+  0x00001526c5760cbc: ffff 4181 | fb10 552c | 010f 85c1 | 2400 0045 | 8b5a 1049 | 8bf3 48c1 | e603 418b | d141 8be9 
+  0x00001526c5760cdc: 6690 c5f8 | 7748 b8ff | ffff ffff 
+
+  0x00001526c5760ce8: ;   {virtual_call}
+  0x00001526c5760ce8: ffff ffe8 
+
+  0x00001526c5760cec: ; ImmutableOopMap {[24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface getSample {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.SampleList$2::get@5 (line 110)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.SampleList$2::get@2 (line 107)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5760cec: 9076 3aff | e9f0 fbff | ff43 8b4c 
+
+  0x00001526c5760cf8: ;   {metadata('org/broadinstitute/hellbender/utils/haplotype/Haplotype')}
+  0x00001526c5760cf8: d408 81f9 | 68bd 2901 | 0f85 3a2e | 0000 4c8b | 4c24 6045 | 8b49 204b | 8d0c d48b | 6920 443b 
+  0x00001526c5760d18: cd0f 8542 | 2700 0044 | 0fb6 510c | 4c8b 4c24 | 6045 0fb6 | 490c 453b | ca0f 85a6 | f8ff ff0f 
+  0x00001526c5760d38: b669 0e85 | ed0f 85dd | 2900 0044 | 8b51 1049 | 8bfb 48c1 | e703 498b | f248 c1e6 | 0348 3bfe 
+  0x00001526c5760d58: 0f84 d300 | 0000 4885 | ff0f 84d1 | 0000 0048 | 85f6 0f84 | c800 0000 | 8b4f 0c3b | 4e0c 0f85 
+  0x00001526c5760d78: bc00 0000 | 85c9 0f84 | ad00 0000 | 488d 7f10 | 488d 7610 | 8bc1 83e0 | 1f83 e1e0 | 0f84 4b00 
+  0x00001526c5760d98: 0000 488d | 3c0f 488d | 340e 48f7 | d9c5 fe6f | 040f c5fe | 6f0c 0ec5 | fdef c1c4 | e27d 17c0 
+  0x00001526c5760db8: 0f85 7a00 | 0000 4883 | c120 75e1 | 85c0 0f84 | 6500 0000 | c5fe 6f44 | 07e0 c5fe | 6f4c 06e0 
+  0x00001526c5760dd8: c5fd efc1 | c4e2 7d17 | c075 55eb | 4c8b c883 | e1fc 7419 | 488d 3c0f | 488d 340e | 48f7 d98b 
+  0x00001526c5760df8: 1c0f 3b1c | 0e75 3948 | 83c1 0475 | f2f7 c002 | 0000 0074 | 120f b71f | 0fb7 0e3b | d975 2148 
+  0x00001526c5760e18: 8d7f 0248 | 8d76 02f7 | c001 0000 | 0074 0a0f | b61f 0fb6 | 0e3b d975 | 07b8 0100 | 0000 eb02 
+  0x00001526c5760e38: 33c0 c5fd | efc0 c5f5 | efc9 85c0 | 0f85 8df7 | ffff be45 | ffff ff48 | 8b6c 2438 | 4c8b 5424 
+  0x00001526c5760e58: 404c 8914 | 2444 8b5c | 2410 4489 | 5c24 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 | 2418 4c89 
+  0x00001526c5760e78: 5424 1044 | 8b54 2420 | 4489 5424 | 184c 8b54 | 2430 4c89 | 5424 284c | 8b54 2460 | 4c89 5424 
+  0x00001526c5760e98: 304c 8b54 | 2448 4c89 | 5424 3889 | 5424 2444 | 8944 2448 | 8944 244c 
+
+  0x00001526c5760eb0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5760eb0: c5f8 77e8 
+
+  0x00001526c5760eb4: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [36]=NarrowOop [40]=Oop [48]=Oop [56]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.haplotype.Haplotype::equals@49 (line 168)
+                      ; - java.util.HashMap::getNode@63 (line 570)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c5760eb4: 48c7 3aff | 41b8 0100 | 0000 e9e9 
+
+  0x00001526c5760ec0: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5760ec0: f6ff ff41 | 81f8 1861 | 2c01 0f85 | ac28 0000 | 458b 5310 
+
+  0x00001526c5760ed4: ; implicit exception: dispatches to 0x00001526c576454c
+  0x00001526c5760ed4: 438b 6cd4 | 3445 8b5c | ec08 4d8d 
+
+  0x00001526c5760ee0: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c5760ee0: 14ec 4181 | fba0 5e2c 
+
+  0x00001526c5760ee8: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5760ee8: 0174 7241 | 81fb 1861 | 2c01 0f85 | 142a 0000 | 458b 5a10 
+
+  0x00001526c5760efc: ; implicit exception: dispatches to 0x00001526c5764600
+  0x00001526c5760efc: 438b 6cdc | 3445 8b54 | ec08 498d 
+
+  0x00001526c5760f08: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c5760f08: 34ec 4181 | faa0 5e2c 
+
+  0x00001526c5760f10: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5760f10: 0174 2241 | 81fa 1861 | 2c01 0f85 | e42a 0000 | 488b 6c24 | 3066 6690 
+
+  0x00001526c5760f28: ;   {optimized virtual_call}
+  0x00001526c5760f28: c5f8 77e8 
+
+  0x00001526c5760f2c: ; ImmutableOopMap {rbp=Oop [24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5760f2c: 5071 3aff | e9d3 f4ff | ff44 8b5e | 0c43 8b6c | dc0c 458b 
+
+  0x00001526c5760f40: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5760f40: 54ec 0841 | 81fa 40e1 | 0000 0f85 | 7c2a 0000 | 4d8d 14ec | 418b 4210 | e9ab f4ff | ff45 8b52 
+  0x00001526c5760f60: 0c43 8b6c | d40c 458b 
+
+  0x00001526c5760f68: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5760f68: 5cec 0841 | 81fb 40e1 | 0000 0f85 | cc28 0000 | 4d8d 14ec | 418b 4210 | e983 f4ff 
+
+  0x00001526c5760f84: ;   {oop(a 'java/lang/Class'{0x0000000140f8ea28} = 'org/broadinstitute/hellbender/utils/pairhmm/PairHMM')}
+  0x00001526c5760f84: ff49 ba28 | eaf8 4001 | 0000 0045 | 8b52 7443 | 0fb6 6cd4 | 0c85 ed0f | 84fb 2900 | 00c5 f877 
+  0x00001526c5760fa4: 49ba 80a8 | bbda 2615 | 0000 41ff | d24c 8b5c | 2438 492b 
+
+  0x00001526c5760fb8: ;   {oop(a 'java/lang/Class'{0x0000000140f8ea28} = 'org/broadinstitute/hellbender/utils/pairhmm/PairHMM')}
+  0x00001526c5760fb8: 4318 49ba | 28ea f840 | 0100 0000 | 4901 4278 | 4989 4310 | 4d8b 5360 | 4d01 5368 | c5f8 7748 
+  0x00001526c5760fd8: 81c4 d000 
+
+  0x00001526c5760fdc: ;   {poll_return}
+  0x00001526c5760fdc: 0000 5d49 | 3ba7 4803 | 0000 0f87 | d837 0000 
+
+  0x00001526c5760fec: ;   {metadata('htsjdk/variant/variantcontext/Allele')}
+  0x00001526c5760fec: c348 b8b0 | dd1c 2026 | 1500 0048 | 8b7e 288b | 0f48 83c7 | 0848 85c0 | f248 af0f | 8504 0000 
+  0x00001526c576100c: 0048 8946 | 200f 849e | fcff ffbe | deff ffff | 4c8b 5424 | 384c 8914 | 2466 6690 
+
+  0x00001526c5761028: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761028: c5f8 77e8 
+
+  0x00001526c576102c: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [24]=Oop [48]=Oop [64]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@20 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c576102c: d0c5 3aff 
+
+  0x00001526c5761030: ;   {metadata('htsjdk/variant/variantcontext/Allele')}
+  0x00001526c5761030: 48b8 b0dd | 1c20 2615 | 0000 488b | 7e28 8b0f | 4883 c708 | 4885 c0f2 | 48af 0f85 | 0400 0000 
+  0x00001526c5761050: 4889 4620 | 0f84 c0fb | ffff bede | ffff ff4c | 8b54 2438 | 4c89 1424 
+
+  0x00001526c5761068: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761068: c5f8 77e8 
+
+  0x00001526c576106c: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [24]=Oop [48]=Oop [64]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@20 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c576106c: 90c5 3aff | c5fa 6f84 | 2480 0000 | 0045 33c0 | e938 e6ff | ffc5 fa6f | 8424 8000 | 0000 4533 
+  0x00001526c576108c: c0e9 d3e9 | ffff 48bd | 0000 f8b5 | 2615 0000 | be01 0000 | 00e9 c5ef | ffff ffc1 | eb08 83c1 
+  0x00001526c57610ac: 02eb 0383 | c103 be3d | ffff ff48 | 8b6c 2408 | 4c8b 5424 | 104c 8914 | 2444 8b54 | 2420 4489 
+  0x00001526c57610cc: 5424 1044 | 8b5c 2424 | 4489 5c24 | 144c 8b54 | 2430 4c89 | 5424 1844 | 8b54 242c | 4489 5424 
+  0x00001526c57610ec: 244c 8944 | 2430 897c | 2438 4889 | 5c24 4889 | 4c24 5044 | 894c 2458 
+
+  0x00001526c5761104: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761104: c5f8 77e8 
+
+  0x00001526c5761108: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [72]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*if_icmplt {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMUtils::fastqToPhred@3 (line 424)
+                      ; - htsjdk.samtools.SAMUtils::fastqToPhred@29 (line 403)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@8 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5761108: f4c4 3aff | ffc1 eb08 | 83c1 02eb | 0383 c103 | be3d ffff | ff48 8b6c | 2408 4c8b | 5424 104c 
+  0x00001526c5761128: 8914 2444 | 8b54 2420 | 4489 5424 | 1044 8b5c | 2424 4489 | 5c24 144c | 8b54 2430 | 4c89 5424 
+  0x00001526c5761148: 1844 8b54 | 242c 4489 | 5424 244c | 8944 2430 | 897c 2438 | 4889 5c24 | 4889 4c24 | 5044 894c 
+  0x00001526c5761168: 2458 6690 
+
+  0x00001526c576116c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576116c: c5f8 77e8 
+
+  0x00001526c5761170: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [72]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*if_icmplt {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMUtils::fastqToPhred@3 (line 424)
+                      ; - htsjdk.samtools.SAMUtils::fastqToPhred@29 (line 403)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@8 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5761170: 8cc4 3aff | c5fa 7f84 | 2480 0000 | 0049 8bf3 
+
+  0x00001526c5761180: ;   {optimized virtual_call}
+  0x00001526c5761180: c5f8 77e8 
+
+  0x00001526c5761184: ; ImmutableOopMap {rbp=NarrowOop [0]=Derived_oop_[48] [8]=Oop [16]=Oop [24]=Oop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual decodeBaseQualities {reexecute=0 rethrow=0 return_oop=1}
+                      ; - htsjdk.samtools.BAMRecord::getBaseQualities@17 (line 382)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualities@4 (line 286)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@126 (line 124)
+  0x00001526c5761184: f86e 3aff | 488b d841 | 807f 3800 | 0f85 c212 | 0000 4c8b | d34c 8bdb | 49c1 eb03 | 4c8b 4424 
+  0x00001526c57611a4: 1845 8958 | 2c4d 8bd8 | 4d33 d349 | c1ea 184d | 85d2 741f | 4885 db74 | 1a49 c1eb | 0948 bf00 
+  0x00001526c57611c4: 00f8 b526 | 1500 0049 | 03fb 803f | 040f 85bd | 1200 0048 | 85db 0f84 | 5428 0000 | 4889 5c24 
+  0x00001526c57611e4: 50c5 fa6f | 8424 8000 | 0000 e973 | e2ff ff45 | 8b12 4585 | d20f 841a | e0ff ff4d | 8b5f 2049 
+  0x00001526c5761204: 8bfa 48c1 | e703 4d85 | db0f 843d | 1a00 004d | 8b57 304b | 897c 1af8 | 4983 c3f8 | 4d89 5f20 
+  0x00001526c5761224: e9f0 dfff | ff45 8b5c | ec0c 4585 | db0f 84a6 | e1ff ff4d | 8b57 2049 | 8bfb 48c1 | e703 4d85 
+  0x00001526c5761244: d20f 842f | 1a00 004d | 8b5f 304b | 897c 13f8 | 4983 c2f8 | 4d89 5720 | e97c e1ff | ff45 8b5c 
+  0x00001526c5761264: ec10 4585 | db0f 84e4 | e2ff ff4d | 8b57 2049 | 8bfb 48c1 | e703 4d85 | d20f 8421 | 1a00 004d 
+  0x00001526c5761284: 8b5f 304b | 897c 13f8 | 4983 c2f8 | 4d89 5720 | e9ba e2ff | ff4d 8b57 | 504d 8b5f | 40f0 8344 
+  0x00001526c57612a4: 24c0 0080 | 3f00 0f84 | a0df ffff | 4488 274d | 85db 752a | c5fa 7f84 | 2480 0000 | 0049 8bf7 
+  0x00001526c57612c4: c5f8 7749 | bac0 4065 | da26 1500 | 0041 ffd2 | c5fa 6f84 | 2480 0000 | 00e9 6edf | ffff 4b89 
+  0x00001526c57612e4: 7c1a f849 | 83c3 f84d | 895f 40e9 | 5cdf ffff | 4d8b 5750 | 4d8b 5f40 | f083 4424 | c000 803f 
+  0x00001526c5761304: 000f 840b | e1ff ff44 | 8827 4d85 | db75 2ac5 | fa7f 8424 | 8000 0000 | 498b f7c5 | f877 49ba 
+  0x00001526c5761324: c040 65da | 2615 0000 | 41ff d2c5 | fa6f 8424 | 8000 0000 | e9d9 e0ff | ff4b 897c | 1af8 4983 
+  0x00001526c5761344: c3f8 4d89 | 5f40 e9c7 | e0ff ff4d | 8b57 504d | 8b5f 40f0 | 8344 24c0 | 0080 3f00 | 0f84 26e2 
+  0x00001526c5761364: ffff 4488 | 274d 85db | 752a c5fa | 7f84 2480 | 0000 0049 | 8bf7 c5f8 | 7749 bac0 | 4065 da26 
+  0x00001526c5761384: 1500 0041 | ffd2 c5fa | 6f84 2480 | 0000 00e9 | f4e1 ffff | 4b89 7c1a | f849 83c3 | f84d 895f 
+  0x00001526c57613a4: 40e9 e2e1 | ffff c5fa | 7f84 2490 | 0000 0048 | 8bb4 2480 | 0000 004c | 8b54 2460 | 4c89 5424 
+  0x00001526c57613c4: 3866 6690 
+
+  0x00001526c57613c8: ;   {optimized virtual_call}
+  0x00001526c57613c8: c5f8 77e8 
+
+  0x00001526c57613cc: ; ImmutableOopMap {[0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [56]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop [128]=Oop }
+                      ;*invokevirtual decodeAttributes {reexecute=0 rethrow=0 return_oop=0}
+                      ; - htsjdk.samtools.BAMRecord::getAttribute@8 (line 391)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@3 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c57613cc: b06c 3aff | c5fa 6f84 | 2490 0000 | 00e9 3fe2 | ffff c5fa | 7f84 2480 | 0000 0048 | 8bf5 6690 
+  0x00001526c57613ec: ;   {optimized virtual_call}
+  0x00001526c57613ec: c5f8 77e8 
+
+  0x00001526c57613f0: ; ImmutableOopMap {rbp=Oop [0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual decodeBaseQualities {reexecute=0 rethrow=0 return_oop=1}
+                      ; - htsjdk.samtools.BAMRecord::getBaseQualities@17 (line 382)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualityCount@4 (line 300)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@10 (line 841)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c57613f0: 8c6c 3aff | 488b d841 | 807f 3800 | 0f85 9213 | 0000 4c8b | d34c 8bdb | 49c1 eb03 | 4489 5d2c 
+  0x00001526c5761410: 4c8b dd4d | 33d3 49c1 | ea18 4d85 | d274 1f48 | 85db 741a | 49c1 eb09 | 48bf 0000 | f8b5 2615 
+  0x00001526c5761430: 0000 4903 | fb80 3f04 | 0f85 8d13 | 0000 4885 | db0f 8426 | 2600 00c5 | fa6f 8424 | 8000 0000 
+  0x00001526c5761450: e9bd e2ff | ff45 8bd3 | 478b 54d4 | 1445 85d2 | 0f84 90e4 | ffff 4d8b | 5f20 498b | fa48 c1e7 
+  0x00001526c5761470: 034d 85db | 0f84 ce19 | 0000 4d8b | 5730 4b89 | 7c1a f849 | 83c3 f84d | 895f 20e9 | 66e4 ffff 
+  0x00001526c5761490: 4d8b 5750 | 4d8b 5f40 | f083 4424 | c000 803f | 000f 8492 | e4ff ff44 | 8827 4d85 | db75 2ac5 
+  0x00001526c57614b0: fa7f 8424 | 8000 0000 | 498b f7c5 | f877 49ba | c040 65da | 2615 0000 | 41ff d2c5 | fa6f 8424 
+  0x00001526c57614d0: 8000 0000 | e960 e4ff | ff4b 897c | 1af8 4983 | c3f8 4d89 | 5f40 e94e | e4ff ffc5 | fa7f 8424 
+  0x00001526c57614f0: 9000 0000 | 498b f24c | 8b54 2460 | 4c89 5424 | 3866 6690 
+
+  0x00001526c5761504: ;   {optimized virtual_call}
+  0x00001526c5761504: c5f8 77e8 
+
+  0x00001526c5761508: ; ImmutableOopMap {[0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [56]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop [128]=Oop }
+                      ;*invokevirtual decodeAttributes {reexecute=0 rethrow=0 return_oop=0}
+                      ; - htsjdk.samtools.BAMRecord::getAttribute@8 (line 391)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@3 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5761508: 746b 3aff | c5fa 6f84 | 2490 0000 | 00e9 b0e4 | ffff c5fa | 7f84 2480 | 0000 0048 | 8bf5 6690 
+  0x00001526c5761528: ;   {optimized virtual_call}
+  0x00001526c5761528: c5f8 77e8 
+
+  0x00001526c576152c: ; ImmutableOopMap {rbp=Oop [0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual decodeBaseQualities {reexecute=0 rethrow=0 return_oop=1}
+                      ; - htsjdk.samtools.BAMRecord::getBaseQualities@17 (line 382)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualityCount@4 (line 300)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@10 (line 857)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c576152c: 506b 3aff | 488b d841 | 807f 3800 | 0f85 4a13 | 0000 4c8b | d34c 8bc3 | 49c1 e803 | 4489 452c 
+  0x00001526c576154c: 4c8b dd4d | 33d3 49c1 | ea18 4d85 | d274 1f48 | 85db 741a | 49c1 eb09 | 48bf 0000 | f8b5 2615 
+  0x00001526c576156c: 0000 4903 | fb80 3f04 | 0f85 4513 | 0000 4885 | db0f 84f2 | 2400 00c5 | fa6f 8424 | 8000 0000 
+  0x00001526c576158c: e946 d6ff | ff45 8bda | 478b 5cdc | 1845 85db | 0f84 27d8 | ffff 4d8b | 5720 498b | fb48 c1e7 
+  0x00001526c57615ac: 034d 85d2 | 0f84 bc18 | 0000 4d8b | 5f30 4b89 | 7c13 f849 | 83c2 f84d | 8957 20e9 | fdd7 ffff 
+  0x00001526c57615cc: 478b 5cd4 | 1c45 85db | 0f84 c2da | ffff 4d8b | 5720 498b | fb48 c1e7 | 034d 85d2 | 0f84 ae18 
+  0x00001526c57615ec: 0000 4d8b | 5f30 4b89 | 7c13 f849 | 83c2 f84d | 8957 20e9 | 98da ffff | 4d8b 5750 | 4d8b 5f40 
+  0x00001526c576160c: f083 4424 | c000 803f | 000f 84f0 | d7ff ff44 | 8827 4d85 | db75 2ac5 | fa7f 8424 | 8000 0000 
+  0x00001526c576162c: 498b f7c5 | f877 49ba | c040 65da | 2615 0000 | 41ff d2c5 | fa6f 8424 | 8000 0000 | e9be d7ff 
+  0x00001526c576164c: ff4b 897c | 1af8 4983 | c3f8 4d89 | 5f40 e9ac | d7ff ff4d | 8b57 504d | 8b5f 40f0 | 8344 24c0 
+  0x00001526c576166c: 0080 3f00 | 0f84 7cda | ffff 4488 | 274d 85db | 752a c5fa | 7f84 2480 | 0000 0049 | 8bf7 c5f8 
+  0x00001526c576168c: 7749 bac0 | 4065 da26 | 1500 0041 | ffd2 c5fa | 6f84 2480 | 0000 00e9 | 4ada ffff | 4b89 7c1a 
+  0x00001526c57616ac: f849 83c3 | f84d 895f | 40e9 38da | ffff c5fa | 7f84 2490 | 0000 0049 | 8bf3 4c8b | 5424 604c 
+  0x00001526c57616cc: 8954 2450 
+
+  0x00001526c57616d0: ;   {optimized virtual_call}
+  0x00001526c57616d0: c5f8 77e8 
+
+  0x00001526c57616d4: ; ImmutableOopMap {rbp=NarrowOop [0]=Derived_oop_[48] [8]=Oop [16]=Oop [24]=Oop [48]=Oop [64]=Oop [80]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual decodeReadBases {reexecute=0 rethrow=0 return_oop=1}
+                      ; - htsjdk.samtools.BAMRecord::getReadBases@17 (line 372)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBases@4 (line 252)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@111 (line 123)
+  0x00001526c57616d4: a869 3aff | 488b d841 | 807f 3800 | 0f85 f61c | 0000 4c8b | d34c 8bdb | 49c1 eb03 | 4c8b 4424 
+  0x00001526c57616f4: 1845 8958 | 284d 8bd8 | 4d33 d349 | c1ea 184d | 85d2 741f | 4885 db74 | 1a49 c1eb | 0948 bf00 
+  0x00001526c5761714: 00f8 b526 | 1500 0049 | 03fb 803f | 040f 85f1 | 1c00 0048 | 85db 0f84 | 7d23 0000 | 4889 9c24 
+  0x00001526c5761734: 8000 0000 | c5fa 6f84 | 2490 0000 | 00e9 9fdb | ffff c5fa | 7f84 2480 | 0000 0048 | 8bf5 6690 
+  0x00001526c5761754: ;   {optimized virtual_call}
+  0x00001526c5761754: c5f8 77e8 
+
+  0x00001526c5761758: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual decodeReadBases {reexecute=0 rethrow=0 return_oop=1}
+                      ; - htsjdk.samtools.BAMRecord::getReadBases@17 (line 372)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getLength@4 (line 274)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::gapContinuationPenalties@4 (line 44)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@171 (line 127)
+  0x00001526c5761758: 2469 3aff | 488b d841 | 807f 3800 | 0f85 521d | 0000 4c8b | d34c 8bdb | 49c1 eb03 | 4489 5d28 
+  0x00001526c5761778: 4c8b dd4d | 33d3 49c1 | ea18 4d85 | d274 1f48 | 85db 741a | 49c1 eb09 | 48bf 0000 | f8b5 2615 
+  0x00001526c5761798: 0000 4903 | fb80 3f04 | 0f85 4d1d | 0000 4885 | db0f 8407 | 2300 00c5 | fa6f 8424 | 8000 0000 
+  0x00001526c57617b8: e9e0 d6ff | ffc5 fa7f | 8424 8000 
+
+  0x00001526c57617c4: ;   {metadata('org/broadinstitute/gatk/nativebindings/pairhmm/ReadDataHolder')}
+  0x00001526c57617c4: 0000 48be | 286d 5d20 | 2615 0000 | 4c8b 5424 | 604c 8954 | 2450 6690 
+
+  0x00001526c57617dc: ;   {runtime_call _new_instance_Java}
+  0x00001526c57617dc: c5f8 77e8 
+
+  0x00001526c57617e0: ; ImmutableOopMap {[8]=Oop [16]=Oop [48]=Oop [64]=Oop [80]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@96 (line 122)
+  0x00001526c57617e0: 1c7a 45ff | 488b d8c5 | fa6f 8424 | 8000 0000 | e9f0 d9ff | ffc5 fa7f | 8424 9000 
+
+  0x00001526c57617fc: ;   {metadata({type array byte})}
+  0x00001526c57617fc: 0000 48be | 4868 001f | 2615 0000 | 8b54 2458 
+
+  0x00001526c576180c: ;   {runtime_call _new_array_nozero_Java}
+  0x00001526c576180c: c5f8 77e8 
+
+  0x00001526c5761810: ; ImmutableOopMap {rbp=NarrowOop [0]=Derived_oop_[48] [8]=Oop [16]=Oop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop [128]=Oop }
+                      ;*newarray {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.Arrays::copyOf@1 (line 3537)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBases@20 (line 255)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@111 (line 123)
+  0x00001526c5761810: ec7f 45ff | 488b d8c5 | fa6f 8424 | 9000 0000 | e959 dbff | ffc5 fa7f | 8424 8000 
+
+  0x00001526c576182c: ;   {metadata({type array byte})}
+  0x00001526c576182c: 0000 48be | 4868 001f | 2615 0000 | 8b54 2458 
+
+  0x00001526c576183c: ;   {runtime_call _new_array_nozero_Java}
+  0x00001526c576183c: c5f8 77e8 
+
+  0x00001526c5761840: ; ImmutableOopMap {rbp=NarrowOop [0]=Derived_oop_[48] [8]=Oop [16]=Oop [48]=Oop [64]=Oop [80]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*newarray {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.Arrays::copyOf@1 (line 3537)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualities@20 (line 289)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@126 (line 124)
+  0x00001526c5761840: bc7f 45ff | 488b d8c5 | fa6f 8424 | 8000 0000 | e9a2 dcff | ff44 894c | 2420 4489 | 5c24 5048 
+  0x00001526c5761860: 894c 2440 | 4489 5424 
+
+  0x00001526c5761868: ;   {metadata('java/util/AbstractList$Itr')}
+  0x00001526c5761868: 1048 be90 | f915 2026 | 1500 0090 
+
+  0x00001526c5761874: ;   {runtime_call _new_instance_Java}
+  0x00001526c5761874: c5f8 77e8 
+
+  0x00001526c5761878: ; ImmutableOopMap {rbp=Oop [24]=Oop [56]=Oop [64]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.AbstractList::iterator@0 (line 299)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@258 (line 143)
+  0x00001526c5761878: 8479 45ff | e90b ebff | ffc5 fa7f | 8424 8000 
+
+  0x00001526c5761888: ;   {metadata({type array byte})}
+  0x00001526c5761888: 0000 48be | 4868 001f | 2615 0000 | 4c8b 5424 | 604c 8914 | 248b 5424 | 3c66 6690 
+
+  0x00001526c57618a4: ;   {runtime_call _new_array_Java}
+  0x00001526c57618a4: c5f8 77e8 
+
+  0x00001526c57618a8: ; ImmutableOopMap {[0]=Oop [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [104]=Oop [120]=Oop }
+                      ;*newarray {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::gapContinuationPenalties@9 (line 44)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@171 (line 127)
+  0x00001526c57618a8: 547c 45ff | 488b d8c5 | fa6f 8424 | 8000 0000 | e9cb d6ff | ff48 895c | 2420 4489 | 4c24 1044 
+  0x00001526c57618c8: 895c 2404 
+
+  0x00001526c57618cc: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleList$2')}
+  0x00001526c57618cc: 418b ea48 | be58 4b2c | 2026 1500 | 0066 6690 
+
+  0x00001526c57618dc: ;   {runtime_call _new_instance_Java}
+  0x00001526c57618dc: c5f8 77e8 
+
+  0x00001526c57618e0: ; ImmutableOopMap {[24]=Oop [32]=Oop [56]=Oop [64]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList::asListOfAlleles@0 (line 136)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::alleles@4 (line 490)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::alleles@4 (line 1414)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@253 (line 143)
+  0x00001526c57618e0: 1c79 45ff | 448b d548 | 8b4c 2440 | 448b 5c24 | 0444 8b4c | 2410 488b | 5c24 20e9 | 1bea ffff 
+  0x00001526c5761900: 458b 5644 | 4585 d20f | 8457 e8ff | ff49 8b4f | 2049 8bfa | 48c1 e703 | 4885 c90f | 8403 2000 
+  0x00001526c5761920: 004d 8b57 | 3049 897c | 0af8 4883 | c1f8 4989 | 4f20 e92d | e8ff ff4d | 8b57 5049 | 8b4f 40f0 
+  0x00001526c5761940: 8344 24c0 | 0080 7d00 | 000f 8443 | e8ff ff44 | 8865 0048 | 85c9 7542 | 8974 2404 | 4c8b d54c 
+  0x00001526c5761960: 894c 2408 | 4489 1c24 | 4d8b e88b | eb49 8bfa | 498b f7c5 | f877 49ba | c040 65da | 2615 0000 
+  0x00001526c5761980: 41ff d28b | dd4d 8bc5 | 448b 1c24 | 4c8b 4c24 | 088b 7424 | 04e9 f8e7 | ffff 4989 | 6c0a f848 
+  0x00001526c57619a0: 83c1 f849 | 894f 40e9 | e6e7 ffff | 4489 9424 | 9800 0000 | 4c89 8424 | 9000 0000 | c5fa 7f84 
+  0x00001526c57619c0: 2480 0000 
+
+  0x00001526c57619c4: ;   {metadata({type array byte})}
+  0x00001526c57619c4: 0048 be48 | 6800 1f26 | 1500 008b | 5424 1c4c | 8b54 2460 | 4c89 5424 | 5066 6690 
+
+  0x00001526c57619e0: ;   {runtime_call _new_array_Java}
+  0x00001526c57619e0: c5f8 77e8 
+
+  0x00001526c57619e4: ; ImmutableOopMap {[0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [80]=Oop [96]=Oop [104]=Oop [120]=Oop [144]=Oop [152]=NarrowOop }
+                      ;*newarray {reexecute=0 rethrow=0 return_oop=1}
+                      ; - htsjdk.samtools.SAMUtils::fastqToPhred@12 (line 401)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@8 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c57619e4: 187b 45ff | 488b d8c5 | fa6f 8424 | 8000 0000 | 4c8b 8424 | 9000 0000 | 448b 9424 | 9800 0000 
+  0x00001526c5761a04: e911 e4ff | ffc5 fa7f | 8424 8000 
+
+  0x00001526c5761a10: ;   {metadata({type array byte})}
+  0x00001526c5761a10: 0000 48be | 4868 001f | 2615 0000 | 8b54 2438 
+
+  0x00001526c5761a20: ;   {runtime_call _new_array_Java}
+  0x00001526c5761a20: c5f8 77e8 
+
+  0x00001526c5761a24: ; ImmutableOopMap {[0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*newarray {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@15 (line 841)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5761a24: d87a 45ff | 488b d8c5 | fa6f 8424 | 8000 0000 | e9c4 ddff | ff44 899c | 2498 0000 | 004c 8984 
+  0x00001526c5761a44: 2490 0000 | 00c5 fa7f | 8424 8000 
+
+  0x00001526c5761a50: ;   {metadata({type array byte})}
+  0x00001526c5761a50: 0000 48be | 4868 001f | 2615 0000 | 8b54 241c | 4c8b 5424 | 604c 8954 | 2450 6690 
+
+  0x00001526c5761a6c: ;   {runtime_call _new_array_Java}
+  0x00001526c5761a6c: c5f8 77e8 
+
+  0x00001526c5761a70: ; ImmutableOopMap {[0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [80]=Oop [96]=Oop [104]=Oop [120]=Oop [144]=Oop [152]=NarrowOop }
+                      ;*newarray {reexecute=0 rethrow=0 return_oop=1}
+                      ; - htsjdk.samtools.SAMUtils::fastqToPhred@12 (line 401)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@8 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5761a70: 8c7a 45ff | 488b d8c5 | fa6f 8424 | 8000 0000 | 4c8b 8424 | 9000 0000 | 448b 9c24 | 9800 0000 
+  0x00001526c5761a90: e90d e1ff | ffc5 fa7f | 8424 8000 
+
+  0x00001526c5761a9c: ;   {metadata({type array byte})}
+  0x00001526c5761a9c: 0000 48be | 4868 001f | 2615 0000 | 8b54 2438 
+
+  0x00001526c5761aac: ;   {runtime_call _new_array_Java}
+  0x00001526c5761aac: c5f8 77e8 
+
+  0x00001526c5761ab0: ; ImmutableOopMap {[0]=Derived_oop_[48] [8]=Oop [16]=Oop [44]=NarrowOop [48]=Oop [64]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*newarray {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@15 (line 857)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5761ab0: 4c7a 45ff | 488b d8c5 | fa6f 8424 | 8000 0000 | e9fd d1ff | ff48 895c | 2420 4489 | 4c24 1044 
+  0x00001526c5761ad0: 895c 2404 
+
+  0x00001526c5761ad4: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleList$2')}
+  0x00001526c5761ad4: 418b ea48 | be58 4b2c | 2026 1500 | 0066 6690 
+
+  0x00001526c5761ae4: ;   {runtime_call _new_instance_Java}
+  0x00001526c5761ae4: c5f8 77e8 
+
+  0x00001526c5761ae8: ; ImmutableOopMap {[24]=Oop [32]=Oop [56]=Oop [64]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList::asListOfAlleles@0 (line 136)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::alleles@4 (line 490)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::alleles@4 (line 1414)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@253 (line 143)
+  0x00001526c5761ae8: 1477 45ff | 448b d548 | 8b4c 2440 | 448b 5c24 | 0444 8b4c | 2410 488b | 5c24 20e9 | c7e7 ffff 
+  0x00001526c5761b08: 4489 5c24 | 0c4c 8944 | 2410 895c | 2408 4c89 | 2c24 498b 
+
+  0x00001526c5761b1c: ;   {metadata('org/broadinstitute/gatk/nativebindings/pairhmm/ReadDataHolder'[])}
+  0x00001526c5761b1c: ee48 beb0 | d561 2026 | 1500 008b | d366 6690 
+
+  0x00001526c5761b2c: ;   {runtime_call _new_array_Java}
+  0x00001526c5761b2c: c5f8 77e8 
+
+  0x00001526c5761b30: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [32]=Oop }
+                      ;*anewarray {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@44 (line 118)
+  0x00001526c5761b30: cc79 45ff | 4c8b f54c | 8b2c 248b | 5c24 084c | 8b44 2410 | 448b 5c24 | 0c48 8bd0 | e9a8 cfff 
+  0x00001526c5761b50: ffbe e4ff | ffff 488b | 6c24 3844 | 8b54 2410 | 4489 5424 | 0844 8b5c | 2414 4489 | 5c24 0c4c 
+  0x00001526c5761b70: 8b54 2418 | 4c89 5424 | 1044 8b54 | 2420 4489 | 5424 1844 | 8b54 2450 | 4489 5424 | 1c44 8b5c 
+  0x00001526c5761b90: 2458 4c8b | 5424 304c | 8954 2428 | 4489 4c24 | 244c 8b54 | 2440 4c89 | 5424 3844 | 895c 2440 
+  0x00001526c5761bb0: 895c 2448 | 8954 244c 
+
+  0x00001526c5761bb8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761bb8: c5f8 77e8 
+
+  0x00001526c5761bbc: ; ImmutableOopMap {rbp=Oop [16]=Oop [40]=Oop [56]=Oop [72]=NarrowOop [96]=Oop }
+                      ;*daload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@320 (line 148)
+  0x00001526c5761bbc: 40ba 3aff | bee4 ffff | ff48 8b6c | 2438 8b4c | 2410 894c | 2408 448b | 5424 1444 | 8954 240c 
+  0x00001526c5761bdc: 4c8b 5424 | 184c 8954 | 2410 8b4c | 2420 894c | 2418 448b | 5424 5044 | 8954 241c | 8b4c 2458 
+  0x00001526c5761bfc: 4c8b 5424 | 304c 8954 | 2428 4489 | 4c24 244c | 8b54 2440 | 4c89 5424 | 3889 4c24 | 40c5 fb11 
+  0x00001526c5761c1c: 4424 4889 | 4c24 5044 | 8944 2454 | 4489 5c24 | 5866 6690 
+
+  0x00001526c5761c30: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761c30: c5f8 77e8 
+
+  0x00001526c5761c34: ; ImmutableOopMap {rbp=Oop [16]=Oop [40]=Oop [56]=Oop [84]=NarrowOop [96]=Oop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::set@12 (line 1419)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@321 (line 148)
+  0x00001526c5761c34: c8b9 3aff | bee4 ffff | ff48 8b6c | 2438 448b | 4424 1044 | 8944 2408 | 8b4c 2414 | 894c 240c 
+  0x00001526c5761c54: 4c8b 4424 | 184c 8944 | 2410 448b | 4424 2044 | 8944 2418 | 8b4c 2450 | 448b 4424 | 5844 8944 
+  0x00001526c5761c74: 2420 4c8b | 4424 304c | 8944 2428 | 4489 4c24 | 244c 8b44 | 2440 4c89 | 4424 3844 | 8bc9 4489 
+  0x00001526c5761c94: 4c24 44c5 | fb11 4424 | 4844 8954 | 2454 4489 | 5c24 5890 
+
+  0x00001526c5761ca8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761ca8: c5f8 77e8 
+
+  0x00001526c5761cac: ; ImmutableOopMap {rbp=Oop [16]=Oop [40]=Oop [56]=Oop [84]=NarrowOop [96]=Oop }
+                      ;*iaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::set@30 (line 1420)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@321 (line 148)
+  0x00001526c5761cac: 50b9 3aff | bee4 ffff | ff48 8b6c | 2438 4c8b | 5c24 404c | 891c 2444 | 8b5c 2410 | 4489 5c24 
+  0x00001526c5761ccc: 0844 8b44 | 2414 4489 | 4424 0c4c | 8b5c 2418 | 4c89 5c24 | 1044 8b5c | 2420 4489 | 5c24 1844 
+  0x00001526c5761cec: 8b44 2450 | 4c8b 5c24 | 304c 895c | 2428 4489 | 4c24 2444 | 8954 2438 | 4489 4424 | 3cc5 fb11 
+  0x00001526c5761d0c: 4424 4090 
+
+  0x00001526c5761d10: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761d10: c5f8 77e8 
+
+  0x00001526c5761d14: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [40]=Oop [56]=NarrowOop [96]=Oop }
+                      ;*dastore {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::set@51 (line 1421)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@321 (line 148)
+  0x00001526c5761d14: e8b8 3aff | bede ffff | ff48 8b6c | 2438 448b | 5c24 1044 | 895c 2408 | 448b 5424 | 1444 8954 
+  0x00001526c5761d34: 240c 4c8b | 5424 184c | 8954 2410 | 448b 5424 | 2044 8954 | 2418 48ff | 7424 3048 | 8f44 2428 
+  0x00001526c5761d54: 4489 4c24 | 2448 8944 | 2438 6690 
+
+  0x00001526c5761d60: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761d60: c5f8 77e8 
+
+  0x00001526c5761d64: ; ImmutableOopMap {rbp=Oop [16]=Oop [36]=NarrowOop [40]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface get {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c5761d64: 98b8 3aff | be76 ffff | ff48 8b6c | 2438 4c8b | 4424 404c | 8904 2444 | 8b44 2410 | 4489 4424 
+  0x00001526c5761d84: 0844 8b44 | 2414 4489 | 4424 0c4c | 8b44 2418 | 4c89 4424 | 1044 8b4c | 2420 4489 | 4c24 1844 
+  0x00001526c5761da4: 8b44 2450 | 4489 4424 | 1c4c 8b44 | 2430 4c89 | 4424 284c | 8b44 2460 | 4c89 4424 | 304c 8b44 
+  0x00001526c5761dc4: 2448 4c89 | 4424 3844 | 8954 2424 | 897c 2448 | 4489 5c24 | 4c89 5c24 | 5466 6690 
+
+  0x00001526c5761de0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761de0: c5f8 77e8 
+
+  0x00001526c5761de4: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [36]=NarrowOop [40]=Oop [48]=Oop [56]=Oop [76]=NarrowOop }
+                      ;*if_icmpge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.Arrays::hashCode@19 (line 4383)
+                      ; - org.broadinstitute.hellbender.utils.haplotype.Haplotype::hashCode@4 (line 173)
+                      ; - java.util.HashMap::hash@9 (line 338)
+                      ; - java.util.HashMap::getNode@23 (line 568)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c5761de4: 18b8 3aff | 83c6 1f41 | b801 0000 | 00e9 a1e7 | ffff bee4 | ffff ff48 | 8b6c 2438 | 4c8b 5424 
+  0x00001526c5761e04: 404c 8914 | 2444 8b54 | 2410 4489 | 5424 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 | 2418 4c89 
+  0x00001526c5761e24: 5424 1044 | 8b5c 2420 | 4489 5c24 | 1848 894c | 2438 4489 | 4c24 4044 | 894c 2444 | 4489 4424 
+  0x00001526c5761e44: 4866 6690 
+
+  0x00001526c5761e48: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761e48: c5f8 77e8 
+
+  0x00001526c5761e4c: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [48]=Oop [56]=Oop }
+                      ;*invokestatic checkIndex {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.Objects::checkIndex@3 (line 361)
+                      ; - java.util.ArrayList::get@5 (line 427)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5761e4c: b0b7 3aff | bee4 ffff | ff48 8b6c | 2438 448b | 5424 1044 | 8954 2408 | 448b 5c24 | 1444 895c 
+  0x00001526c5761e6c: 240c 4c8b | 5424 184c | 8954 2410 | 448b 5c24 | 2044 895c | 2418 4489 | 4424 3844 | 894c 243c 
+  0x00001526c5761e8c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761e8c: c5f8 77e8 
+
+  0x00001526c5761e90: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [56]=NarrowOop [64]=Oop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList::elementData@5 (line 411)
+                      ; - java.util.ArrayList::get@11 (line 428)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5761e90: 6cb7 3aff | bede ffff | ff48 8b6c | 2438 4c8b | 5424 404c | 8914 2444 | 8b54 2410 | 4489 5424 
+  0x00001526c5761eb0: 0844 8b54 | 2414 4489 | 5424 0c4c | 8b54 2418 | 4c89 5424 | 1044 8b54 | 2420 4489 | 5424 1844 
+  0x00001526c5761ed0: 8b5c 244c | 4c89 4c24 | 3844 895c | 2440 4489 | 5c24 4444 | 8944 2448 
+
+  0x00001526c5761ee8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761ee8: c5f8 77e8 
+
+  0x00001526c5761eec: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [48]=Oop [56]=Oop [72]=NarrowOop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@5 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5761eec: 10b7 3aff | becc ffff | ff48 8b6c | 2438 4c8b | 5424 404c | 8914 2444 | 8b5c 2410 | 4489 5c24 
+  0x00001526c5761f0c: 0844 8b5c | 2414 4489 | 5c24 0c4c | 8b54 2418 | 4c89 5424 | 1044 8b5c | 2420 4489 | 5c24 1844 
+  0x00001526c5761f2c: 8b54 244c | 4889 4c24 | 3844 8954 | 2440 4489 | 5424 4444 | 8944 2448 
+
+  0x00001526c5761f44: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761f44: c5f8 77e8 
+
+  0x00001526c5761f48: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [48]=Oop [56]=Oop }
+                      ;*invokestatic checkIndex {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.Objects::checkIndex@3 (line 361)
+                      ; - java.util.ArrayList::get@5 (line 427)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5761f48: b4b6 3aff | bede ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b44 2414 | 4489 4424 | 0c4c 8b5c 
+  0x00001526c5761f68: 2418 4c89 | 5c24 1044 | 8b5c 2420 | 4489 5c24 | 1889 5c24 | 204c 894c | 2428 4489 | 5424 3090 
+  0x00001526c5761f88: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5761f88: c5f8 77e8 
+
+  0x00001526c5761f8c: ; ImmutableOopMap {[16]=Oop [40]=Oop [48]=NarrowOop [56]=Oop [64]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5761f8c: 70b6 3aff | 8974 2420 | 4889 6c24 | 184c 894c | 2410 4489 | 5c24 044c | 8944 2408 | 891c 2449 
+  0x00001526c5761fac: ;   {metadata({type array double})}
+  0x00001526c5761fac: 8bee 48be | 5066 001f | 2615 0000 
+
+  0x00001526c5761fb8: ;   {runtime_call _new_array_Java}
+  0x00001526c5761fb8: c5f8 77e8 
+
+  0x00001526c5761fbc: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop }
+                      ;*newarray {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@191 (line 131)
+  0x00001526c5761fbc: 4075 45ff | 4c8b f58b | 1c24 4c8b | 4424 0844 | 8b5c 2404 | 4c8b 4c24 | 1048 8b6c | 2418 8b74 
+  0x00001526c5761fdc: 2420 4c8b | e8e9 73e1 | ffff bef4 | ffff ff44 | 8b54 2410 | 4489 5424 | 0844 8b5c | 2414 4489 
+  0x00001526c5761ffc: 5c24 0c4c | 8b54 2418 | 4c89 5424 | 1044 8b54 | 2420 4489 | 5424 184c | 8b54 2430 | 4c89 5424 
+  0x00001526c576201c: 2866 6690 
+
+  0x00001526c5762020: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762020: c5f8 77e8 
+
+  0x00001526c5762024: ; ImmutableOopMap {[16]=Oop [40]=Oop [56]=Oop [64]=Oop [96]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@298 (line 147)
+  0x00001526c5762024: d8b5 3aff | be45 ffff | ff48 8b6c | 2438 4c8b | 5424 404c | 8914 2444 | 8b54 2410 | 4489 5424 
+  0x00001526c5762044: 0844 8b54 | 2414 4489 | 5424 0c4c | 8b54 2418 | 4c89 5424 | 1044 8b4c | 2420 4489 | 4c24 184c 
+  0x00001526c5762064: 8b54 2430 | 4c89 5424 | 284c 8b54 | 2460 4c89 | 5424 304c | 8b54 2448 | 4c89 5424 | 3889 5424 
+  0x00001526c5762084: 2444 895c | 2448 4489 | 4424 4c90 
+
+  0x00001526c5762090: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762090: c5f8 77e8 
+
+  0x00001526c5762094: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [36]=NarrowOop [40]=Oop [48]=Oop [56]=Oop [72]=NarrowOop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.HashMap::getNode@85 (line 573)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c5762094: 68b5 3aff | be45 ffff | ff48 8b6c | 2438 4c8b | 5c24 404c | 891c 2444 | 8b44 2410 | 4489 4424 
+  0x00001526c57620b4: 0844 8b5c | 2414 4489 | 5c24 0c4c | 8b5c 2418 | 4c89 5c24 | 1044 8b44 | 2420 4489 | 4424 184c 
+  0x00001526c57620d4: 8b5c 2430 | 4c89 5c24 | 284c 8b5c | 2448 4c89 | 5c24 3848 | 8944 2440 | 4489 5424 | 2489 7c24 
+  0x00001526c57620f4: 4c66 6690 
+
+  0x00001526c57620f8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57620f8: c5f8 77e8 
+
+  0x00001526c57620fc: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [36]=NarrowOop [40]=Oop [56]=Oop [64]=Oop [96]=Oop }
+                      ;*ifle {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.HashMap::getNode@14 (line 567)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c57620fc: 00b5 3aff | be45 ffff | ff48 8b6c | 2438 448b | 4424 1044 | 8944 2408 | 448b 5424 | 1444 8954 
+  0x00001526c576211c: 240c 4c8b | 5424 184c | 8954 2410 | 448b 4424 | 2044 8944 | 2418 4489 | 5c24 2444 | 894c 2438 
+  0x00001526c576213c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576213c: c5f8 77e8 
+
+  0x00001526c5762140: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [64]=Oop }
+                      ;*if_icmpeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.AbstractList$Itr::checkForComodification@11 (line 398)
+                      ; - java.util.AbstractList$Itr::next@1 (line 368)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5762140: bcb4 3aff | be45 ffff | ff48 8b6c | 2438 4c8b | 5c24 404c | 891c 2444 | 8b5c 2410 | 4489 5c24 
+  0x00001526c5762160: 0844 8b44 | 2414 4489 | 4424 0c4c | 8b5c 2418 | 4c89 5c24 | 1044 8b5c | 2420 4489 | 5c24 1844 
+  0x00001526c5762180: 8b5c 2450 | 4489 5c24 | 1c4c 8b5c | 2430 4c89 | 5c24 284c | 8b5c 2448 | 4c89 5c24 | 3848 8944 
+  0x00001526c57621a0: 2440 4489 | 5424 2489 | 7c24 4848 | 8944 2450 | 4489 4c24 | 4c66 6690 
+
+  0x00001526c57621b8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57621b8: c5f8 77e8 
+
+  0x00001526c57621bc: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [36]=NarrowOop [40]=Oop [56]=Oop [64]=Oop [80]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.variant.variantcontext.SimpleAllele::getBases@4 (line 157)
+                      ; - org.broadinstitute.hellbender.utils.haplotype.Haplotype::hashCode@1 (line 173)
+                      ; - java.util.HashMap::hash@9 (line 338)
+                      ; - java.util.HashMap::getNode@23 (line 568)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c57621bc: 40b4 3aff | be45 ffff | ff4c 8b54 | 2438 4c89 | 1424 4c8b | 5424 404c | 8954 2408 | 4489 4424 
+  0x00001526c57621dc: 2c66 6690 
+
+  0x00001526c57621e0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57621e0: c5f8 77e8 
+
+  0x00001526c57621e4: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [24]=Oop [48]=Oop [72]=Oop [96]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.LinkedHashMap::get@16 (line 443)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c57621e4: 18b4 3aff | bee5 ffff | ff48 8b6c | 2438 448b | 5c24 1044 | 895c 2408 | 448b 5424 | 1444 8954 
+  0x00001526c5762204: 240c 4c8b | 5424 184c | 8954 2410 | 448b 5c24 | 2044 895c | 2418 448b | 5424 5044 | 8954 241c 
+  0x00001526c5762224: 4c8b 5424 | 304c 8954 | 2428 4489 | 4c24 244c | 8b54 2440 | 4c89 5424 | 3889 4c24 | 40c5 fb11 
+  0x00001526c5762244: 4424 4889 | 4c24 5044 | 8944 2454 
+
+  0x00001526c5762250: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762250: c5f8 77e8 
+
+  0x00001526c5762254: ; ImmutableOopMap {rbp=Oop [16]=Oop [40]=Oop [56]=Oop [96]=Oop }
+                      ;*ifge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::validIndex@1 (line 770)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::set@14 (line 1419)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@321 (line 148)
+  0x00001526c5762254: a8b3 3aff | be45 ffff | ff48 8b6c | 2438 448b | 5c24 1044 | 895c 2408 | 448b 4424 | 1444 8944 
+  0x00001526c5762274: 240c 4c8b | 5c24 184c | 895c 2410 | 448b 5c24 | 2044 895c | 2418 448b | 4424 5044 | 8944 241c 
+  0x00001526c5762294: 448b 4424 | 584c 8b5c | 2430 4c89 | 5c24 2844 | 894c 2424 | 4c8b 5c24 | 404c 895c | 2438 4489 
+  0x00001526c57622b4: 4424 40c5 | fb11 4424 | 4844 8954 | 245c 6690 
+
+  0x00001526c57622c4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57622c4: c5f8 77e8 
+
+  0x00001526c57622c8: ; ImmutableOopMap {rbp=Oop [16]=Oop [40]=Oop [56]=Oop [96]=Oop }
+                      ;*if_icmplt {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::validIndex@20 (line 772)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::set@31 (line 1420)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@321 (line 148)
+  0x00001526c57622c8: 34b3 3aff | be45 ffff | ff48 8b6c | 2438 488b | 5c24 4048 | 891c 248b | 5424 1089 | 5424 088b 
+  0x00001526c57622e8: 5424 1489 | 5424 0c48 | 8b5c 2418 | 4889 5c24 | 108b 5c24 | 2089 5c24 | 188b 5424 | 5089 5424 
+  0x00001526c5762308: 1c48 8b5c | 2430 4889 | 5c24 2844 | 894c 2424 | 4489 5424 | 3889 4c24 | 3c89 7c24 | 4044 8944 
+  0x00001526c5762328: 2444 4489 | 5c24 4889 | 4424 4c90 
+
+  0x00001526c5762334: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762334: c5f8 77e8 
+
+  0x00001526c5762338: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [40]=Oop [56]=NarrowOop [60]=NarrowOop [64]=NarrowOop [68]=NarrowOop [72]=NarrowOop [96]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.variant.variantcontext.SimpleAllele::getBases@4 (line 157)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@369 (line 149)
+  0x00001526c5762338: c4b2 3aff | c5fb 1044 | d310 488b | 5c24 608b | 6b10 be45 | ffff ff48 | 8b5c 2440 | 4889 5c24 
+  0x00001526c5762358: 088b 5424 | 5089 5424 | 248b 5c24 | 5889 5c24 | 2844 8954 | 242c 894c | 2440 897c | 2444 4489 
+  0x00001526c5762378: 4424 4844 | 895c 244c | 4489 4c24 | 50c5 fb11 | 4424 5890 
+
+  0x00001526c576238c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576238c: c5f8 77e8 
+
+  0x00001526c5762390: ; ImmutableOopMap {rbp=NarrowOop [8]=Oop [24]=Oop [44]=NarrowOop [48]=Oop [56]=Oop [64]=NarrowOop [68]=NarrowOop [72]=NarrowOop [76]=NarrowOop [80]=NarrowOop }
+                      ;*ifnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.PairHMM::writeToResultsFileIfApplicable@4 (line 378)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@382 (line 149)
+  0x00001526c5762390: 6cb2 3aff | be45 ffff | ff48 8b6c | 2438 4c8b | 5424 404c | 8914 2444 | 8b5c 2410 | 4489 5c24 
+  0x00001526c57623b0: 0844 8b5c | 2414 4489 | 5c24 0c4c | 8b54 2418 | 4c89 5424 | 1044 8b5c | 2420 4489 | 5c24 1844 
+  0x00001526c57623d0: 8b5c 244c | 4c89 4c24 | 3844 895c | 2440 4489 | 5c24 4444 | 8944 2448 
+
+  0x00001526c57623e8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57623e8: c5f8 77e8 
+
+  0x00001526c57623ec: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [48]=Oop [56]=Oop }
+                      ;*ifge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::validIndex@1 (line 770)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@8 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57623ec: 10b2 3aff | be45 ffff | ff48 8b6c | 2438 4c8b | 5424 404c | 8914 2444 | 8b54 2410 | 4489 5424 
+  0x00001526c576240c: 0844 8b54 | 2414 4489 | 5424 0c4c | 8b54 2418 | 4c89 5424 | 1044 8b54 | 2420 4489 | 5424 1844 
+  0x00001526c576242c: 8b54 2450 | 4489 5424 | 1c44 8b5c | 244c 4c89 | 4c24 3844 | 895c 2440 | 4489 5c24 | 4444 8944 
+  0x00001526c576244c: 2450 6690 
+
+  0x00001526c5762450: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762450: c5f8 77e8 
+
+  0x00001526c5762454: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [48]=Oop [56]=Oop }
+                      ;*if_icmplt {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::validIndex@20 (line 772)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@8 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5762454: a8b1 3aff | 4c8b 5424 | 1845 8b5a | 2c45 85db | 0f84 2ced | ffff 4d8b | 5720 498b | fb48 c1e7 
+  0x00001526c5762474: 034d 85d2 | 0f84 9e15 | 0000 4d8b | 5f30 4b89 | 7c13 f849 | 83c2 f84d | 8957 20e9 | 02ed ffff 
+  0x00001526c5762494: 4d8b 5750 | 4d8b 5f40 | f083 4424 | c000 803f | 000f 842c | edff ff44 | 8827 4d85 | db75 1849 
+  0x00001526c57624b4: 8bf7 c5f8 | 7749 bac0 | 4065 da26 | 1500 0041 | ffd2 e90c | edff ff4b | 897c 1af8 | 4983 c3f8 
+  0x00001526c57624d4: 4d89 5f40 | e9fa ecff | ffbe e4ff | ffff 488b | 6c24 084c | 8b5c 2410 | 4c89 1c24 | 448b 4424 
+  0x00001526c57624f4: 2044 8944 | 2408 448b | 5c24 2444 | 895c 240c | 4c8b 5c24 | 304c 895c | 2410 4489 | 5424 2c90 
+  0x00001526c5762514: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762514: c5f8 77e8 
+
+  0x00001526c5762518: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [44]=NarrowOop [64]=Oop [120]=Oop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList$Itr::next@64 (line 975)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@72 (line 120)
+  0x00001526c5762518: e4b0 3aff | bee4 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 | 8b5c 2420 | 4489 5c24 
+  0x00001526c5762538: 1044 8b54 | 2424 4489 | 5424 144c | 8b54 2460 | 4c89 5424 | 3844 8b54 | 245c 4489 | 5424 4848 
+  0x00001526c5762558: 895c 2460 
+
+  0x00001526c576255c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576255c: c5f8 77e8 
+
+  0x00001526c5762560: ; ImmutableOopMap {rbp=Oop [0]=Oop [48]=Oop [56]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*aastore {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@103 (line 122)
+  0x00001526c5762560: 9cb0 3aff | bef6 ffff | ff48 8beb 
+
+  0x00001526c576256c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576256c: c5f8 77e8 
+
+  0x00001526c5762570: ; ImmutableOopMap {rbp=Oop }
+                      ;*putfield readBases {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@116 (line 123)
+  0x00001526c5762570: 8cb0 3aff | bef6 ffff | ff48 8beb 
+
+  0x00001526c576257c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576257c: c5f8 77e8 
+
+  0x00001526c5762580: ; ImmutableOopMap {rbp=Oop }
+                      ;*putfield readQuals {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@131 (line 124)
+  0x00001526c5762580: 7cb0 3aff | be45 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 | 8b54 2420 | 4489 5424 
+  0x00001526c57625a0: 1044 8b5c | 2424 4489 | 5c24 144c | 8b54 2430 | 4c89 5424 | 1844 8b54 | 242c 4489 | 5424 244c 
+  0x00001526c57625c0: 8b54 2460 | 4c89 4424 | 304c 8954 | 2438 448b | 5424 5c44 | 8954 2448 
+
+  0x00001526c57625d8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57625d8: c5f8 77e8 
+
+  0x00001526c57625dc: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [56]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@17 (line 656)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@3 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c57625dc: 20b0 3aff | bede ffff | ff4c 8b5c | 2408 4c89 | 1c24 4c8b | 5c24 104c | 895c 2408 | 448b 4424 
+  0x00001526c57625fc: 2044 8944 | 2418 448b | 5c24 2444 | 895c 241c | 4c8b 5c24 | 304c 895c | 2420 4c8b | 5c24 604c 
+  0x00001526c576261c: 895c 2438 | 4489 5424 | 5866 6690 
+
+  0x00001526c5762628: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762628: c5f8 77e8 
+
+  0x00001526c576262c: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [32]=Oop [56]=Oop [88]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual getReadBases {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBases@4 (line 252)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@111 (line 123)
+  0x00001526c576262c: d0af 3aff | bede ffff | ff4c 8b5c | 2408 4c89 | 1c24 4c8b | 5c24 104c | 895c 2408 | 448b 4424 
+  0x00001526c576264c: 2044 8944 | 2418 448b | 5c24 2444 | 895c 241c | 4c8b 5c24 | 304c 895c | 2420 4489 | 5424 5090 
+  0x00001526c576266c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576266c: c5f8 77e8 
+
+  0x00001526c5762670: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [32]=Oop [80]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual getBaseQualities {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualities@4 (line 286)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@126 (line 124)
+  0x00001526c5762670: 8caf 3aff | be66 ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5424 
+  0x00001526c5762690: 2044 8954 | 2418 448b | 5c24 2444 | 895c 241c | 4c8b 5424 | 304c 8954 | 2420 4c8b | 5424 604c 
+  0x00001526c57626b0: 8954 2438 | 448b 5424 | 5c44 8954 | 2448 6690 
+
+  0x00001526c57626c0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57626c0: c5f8 77e8 
+
+  0x00001526c57626c4: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [56]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual getAttribute {reexecute=0 rethrow=0 return_oop=0}
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@3 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c57626c4: 38af 3aff | bede ffff | ff48 894c | 2408 4489 | 5424 1044 | 894c 2420 | 4489 5c24 | 2466 6690 
+  0x00001526c57626e4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57626e4: c5f8 77e8 
+
+  0x00001526c57626e8: ; ImmutableOopMap {rbp=Oop [8]=Oop [24]=Oop [56]=Oop }
+                      ;*invokeinterface iterator {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@258 (line 143)
+  0x00001526c57626e8: 14af 3aff | bede ffff | ff44 8b44 | 2410 4489 | 4424 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 
+  0x00001526c5762708: 2418 4c89 | 5424 1044 | 8b44 2420 | 4489 4424 | 184c 895c | 2428 6690 
+
+  0x00001526c5762720: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762720: c5f8 77e8 
+
+  0x00001526c5762724: ; ImmutableOopMap {[16]=Oop [40]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface hasNext {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5762724: d8ae 3aff | bef6 ffff | ff48 8beb 
+
+  0x00001526c5762730: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762730: c5f8 77e8 
+
+  0x00001526c5762734: ; ImmutableOopMap {rbp=Oop }
+                      ;*putfield insertionGOP {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@146 (line 125)
+  0x00001526c5762734: c8ae 3aff | be45 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 | 8b54 2420 | 4489 5424 
+  0x00001526c5762754: 1044 8b5c | 2424 4489 | 5c24 144c | 8b54 2430 | 4c89 5424 | 1844 8b54 | 242c 4489 | 5424 244c 
+  0x00001526c5762774: 8b54 2460 | 4c89 4424 | 304c 8954 | 2438 448b | 5424 5c44 | 8954 2448 
+
+  0x00001526c576278c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576278c: c5f8 77e8 
+
+  0x00001526c5762790: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [56]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@17 (line 656)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@3 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5762790: 6cae 3aff | 448b 5d2c | 4585 db0f | 8461 ecff | ff4d 8b57 | 2049 8bfb | 48c1 e703 | 4d85 d20f 
+  0x00001526c57627b0: 8488 1200 | 004d 8b5f | 304b 897c | 13f8 4983 | c2f8 4d89 | 5720 e937 | ecff ff4d | 8b57 504d 
+  0x00001526c57627d0: 8b5f 40f0 | 8344 24c0 | 0080 3f00 | 0f84 5cec | ffff 4488 | 274d 85db | 7518 498b | f7c5 f877 
+  0x00001526c57627f0: 49ba c040 | 65da 2615 | 0000 41ff | d2e9 3cec | ffff 4b89 | 7c1a f849 | 83c3 f84d | 895f 40e9 
+  0x00001526c5762810: 2aec ffff | be66 ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5c24 
+  0x00001526c5762830: 2044 895c | 2418 448b | 5424 2444 | 8954 241c | 4c8b 5424 | 304c 8954 | 2420 4c8b | 5424 604c 
+  0x00001526c5762850: 8954 2438 | 448b 5c24 | 5c44 895c | 2448 6690 
+
+  0x00001526c5762860: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762860: c5f8 77e8 
+
+  0x00001526c5762864: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [56]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual getAttribute {reexecute=0 rethrow=0 return_oop=0}
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@3 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5762864: 98ad 3aff | bef6 ffff | ff48 8beb 
+
+  0x00001526c5762870: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762870: c5f8 77e8 
+
+  0x00001526c5762874: ; ImmutableOopMap {rbp=Oop }
+                      ;*putfield deletionGOP {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@161 (line 126)
+  0x00001526c5762874: 88ad 3aff | bef6 ffff | ff48 8beb 
+
+  0x00001526c5762880: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762880: c5f8 77e8 
+
+  0x00001526c5762884: ; ImmutableOopMap {rbp=Oop }
+                      ;*putfield overallGCP {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@176 (line 127)
+  0x00001526c5762884: 78ad 3aff | 448b 552c | 4585 d20f | 84a9 ecff | ff4d 8b5f | 2049 8bfa | 48c1 e703 | 4d85 db0f 
+  0x00001526c57628a4: 84ac 1100 | 004d 8b57 | 304b 897c | 1af8 4983 | c3f8 4d89 | 5f20 e97f | ecff ff4d | 8b57 504d 
+  0x00001526c57628c4: 8b5f 40f0 | 8344 24c0 | 0080 3f00 | 0f84 a4ec | ffff 4488 | 274d 85db | 7518 498b | f7c5 f877 
+  0x00001526c57628e4: 49ba c040 | 65da 2615 | 0000 41ff | d2e9 84ec | ffff 4b89 | 7c1a f849 | 83c3 f84d | 895f 40e9 
+  0x00001526c5762904: 72ec ffff | be76 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 | 8b5c 2420 | 4489 5c24 
+  0x00001526c5762924: 1044 8b5c | 2424 4489 | 5c24 144c | 8b54 2430 | 4c89 5424 | 1844 8b5c | 242c 4489 | 5c24 2448 
+  0x00001526c5762944: 895c 2430 | 4489 4c24 | 3866 6690 
+
+  0x00001526c5762950: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762950: c5f8 77e8 
+
+  0x00001526c5762954: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [104]=Oop [120]=Oop }
+                      ;*if_icmpge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.Arrays::fill@7 (line 3286)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::gapContinuationPenalties@20 (line 45)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@171 (line 127)
+  0x00001526c5762954: a8ac 3aff | 458b d3e9 | 0dc7 ffff | bede ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 
+  0x00001526c5762974: 8b5c 2420 | 4489 5c24 | 1044 8b54 | 2424 4489 | 5424 144c | 8b54 2430 | 4c89 5424 | 1844 8b54 
+  0x00001526c5762994: 242c 4489 | 5424 2444 | 8944 2444 
+
+  0x00001526c57629a0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57629a0: c5f8 77e8 
+
+  0x00001526c57629a4: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [68]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual getReadBases {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getLength@4 (line 274)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::gapContinuationPenalties@4 (line 44)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@171 (line 127)
+  0x00001526c57629a4: 58ac 3aff | bede ffff | ff4c 8b54 | 2430 4c89 | 5424 2890 
+
+  0x00001526c57629b8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57629b8: c5f8 77e8 
+
+  0x00001526c57629bc: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [40]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c57629bc: 40ac 3aff | 448b 1c24 | 4533 d23b | c845 0f44 | dabe 76ff | ffff 448b | 5424 1044 | 8954 2408 
+  0x00001526c57629dc: 448b 4424 | 1444 8944 | 240c 4c8b | 5424 184c | 8954 2410 | 448b 5424 | 2044 8954 | 2418 4489 
+  0x00001526c57629fc: 5c24 2890 
+
+  0x00001526c5762a00: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762a00: c5f8 77e8 
+
+  0x00001526c5762a04: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@272 (line 143)
+  0x00001526c5762a04: f8ab 3aff | bec6 ffff | ff44 8b44 | 2410 4489 | 4424 0844 | 8b5c 2414 | 4489 5c24 | 0c4c 8b5c 
+  0x00001526c5762a24: 2418 4c89 | 5c24 1044 | 8b44 2420 | 4489 4424 | 1889 5c24 | 204c 894c | 2428 4489 | 5424 3090 
+  0x00001526c5762a44: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762a44: c5f8 77e8 
+
+  0x00001526c5762a48: ; ImmutableOopMap {[16]=Oop [40]=Oop [48]=NarrowOop [56]=Oop [64]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5762a48: b4ab 3aff | 4963 c9e9 | ecd2 ffff | be76 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 
+  0x00001526c5762a68: 8b5c 2420 | 4489 5c24 | 1044 8b54 | 2424 4489 | 5424 144c | 8b54 2430 | 4c89 5424 | 1844 8b54 
+  0x00001526c5762a88: 242c 4489 | 5424 2448 | 895c 2430 | 4c8b 5424 | 604c 8954 | 2440 6690 
+
+  0x00001526c5762aa0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762aa0: c5f8 77e8 
+
+  0x00001526c5762aa4: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [64]=Oop [104]=Oop [120]=Oop }
+                      ;*if_icmpge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.Arrays::fill@7 (line 3286)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@21 (line 842)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5762aa4: 58ab 3aff | 418b fae9 | 19ce ffff | be76 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 
+  0x00001526c5762ac4: 8b5c 2420 | 4489 5c24 | 1044 8b54 | 2424 4489 | 5424 144c | 8b54 2430 | 4c89 5424 | 1844 8b54 
+  0x00001526c5762ae4: 242c 4489 | 5424 244c | 8b54 2460 | 4c89 4424 | 3048 895c | 2440 897c | 243c 4c89 | 5424 484c 
+  0x00001526c5762b04: 8b54 2468 | 4c89 5424 | 5044 8b5c | 245c 4489 | 5c24 5890 
+
+  0x00001526c5762b18: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762b18: c5f8 77e8 
+
+  0x00001526c5762b1c: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [64]=Oop [72]=Oop [80]=Oop [120]=Oop }
+                      ;*if_icmpge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMUtils::fastqToPhred@19 (line 402)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@8 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5762b1c: e0aa 3aff | b901 0000 | 00e9 12d4 | ffff be45 | ffff ff4c | 8b54 2408 | 4c89 1424 | 4c8b 5424 
+  0x00001526c5762b3c: 104c 8954 | 2408 448b | 5c24 2044 | 895c 2418 | 448b 5424 | 2444 8954 | 241c 4c8b | 5424 304c 
+  0x00001526c5762b5c: 8954 2420 | 4c8b 5424 | 604c 8954 | 2438 6690 
+
+  0x00001526c5762b6c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762b6c: c5f8 77e8 
+
+  0x00001526c5762b70: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [32]=Oop [56]=Oop [104]=Oop [120]=Oop [128]=Oop }
+                      ;*ifle {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBases@14 (line 255)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@111 (line 123)
+  0x00001526c5762b70: 8caa 3aff | be45 ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5c24 
+  0x00001526c5762b90: 2044 895c | 2418 448b | 5424 2444 | 8954 241c | 4c8b 5424 | 304c 8954 | 2420 6690 
+
+  0x00001526c5762bac: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762bac: c5f8 77e8 
+
+  0x00001526c5762bb0: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [32]=Oop [80]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifle {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualities@14 (line 289)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@126 (line 124)
+  0x00001526c5762bb0: 4caa 3aff | bede ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 | 8b54 2420 | 4489 5424 
+  0x00001526c5762bd0: 1044 8b5c | 2424 4489 | 5c24 144c | 8b54 2430 | 4c89 5424 | 1844 8b54 | 242c 4489 | 5424 244c 
+  0x00001526c5762bf0: 8b54 2460 | 4c89 4424 | 304c 8954 | 2438 448b | 5424 5c44 | 8954 2448 
+
+  0x00001526c5762c08: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762c08: c5f8 77e8 
+
+  0x00001526c5762c0c: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [56]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual toString {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@53 (line 663)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@3 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5762c0c: f0a9 3aff | bede ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5c24 
+  0x00001526c5762c2c: 2044 895c | 2418 448b | 5424 2444 | 8954 241c | 4c8b 5424 | 304c 8954 | 2420 6690 
+
+  0x00001526c5762c48: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762c48: c5f8 77e8 
+
+  0x00001526c5762c4c: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual getBaseQualities {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualityCount@4 (line 300)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@10 (line 841)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5762c4c: b0a9 3aff | c5fa 7f84 | 2480 0000 | 0049 8bf7 | c5f8 7749 | ba90 4065 | da26 1500 | 0041 ffd2 
+  0x00001526c5762c6c: c5fa 6f84 | 2480 0000 | 00e9 9fc5 | ffff c5fa | 7f84 2480 | 0000 0049 | 8bf7 c5f8 | 7749 ba90 
+  0x00001526c5762c8c: 4065 da26 | 1500 0041 | ffd2 c5fa | 6f84 2480 | 0000 00e9 | 39c7 ffff | c5fa 7f84 | 2480 0000 
+  0x00001526c5762cac: 0049 8bf7 | c5f8 7749 | ba90 4065 | da26 1500 | 0041 ffd2 | c5fa 6f84 | 2480 0000 | 00e9 85c8 
+  0x00001526c5762ccc: ffff 4963 | cae9 f0cd | ffff be76 | ffff ff48 | 8b6c 2408 | 4c8b 5424 | 104c 8914 | 2444 8b5c 
+  0x00001526c5762cec: 2420 4489 | 5c24 1044 | 8b54 2424 | 4489 5424 | 144c 8b54 | 2430 4c89 | 5424 1844 | 8b54 242c 
+  0x00001526c5762d0c: 4489 5424 | 2448 895c | 2430 4c8b | 5424 604c | 8954 2440 
+
+  0x00001526c5762d20: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762d20: c5f8 77e8 
+
+  0x00001526c5762d24: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [64]=Oop [104]=Oop [120]=Oop }
+                      ;*if_icmpge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.Arrays::fill@7 (line 3286)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@21 (line 858)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5762d24: d8a8 3aff | 458b c8e9 | 69c0 ffff | be76 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 
+  0x00001526c5762d44: 8b5c 2420 | 4489 5c24 | 1044 8b54 | 2424 4489 | 5424 144c | 8b54 2430 | 4c89 5424 | 1844 8b54 
+  0x00001526c5762d64: 242c 4489 | 5424 244c | 8b54 2460 | 4c89 4424 | 3048 895c | 2440 897c | 243c 4c89 | 5424 484c 
+  0x00001526c5762d84: 8b54 2468 | 4c89 5424 | 5044 8b5c | 245c 4489 | 5c24 5890 
+
+  0x00001526c5762d98: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762d98: c5f8 77e8 
+
+  0x00001526c5762d9c: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [64]=Oop [72]=Oop [80]=Oop [120]=Oop }
+                      ;*if_icmpge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMUtils::fastqToPhred@19 (line 402)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@8 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5762d9c: 60a8 3aff | b901 0000 | 00e9 22cf | ffff bede | ffff ff48 | 8b6c 2408 | 4c8b 5424 | 104c 8914 
+  0x00001526c5762dbc: 2444 8b5c | 2420 4489 | 5c24 1044 | 8b54 2424 | 4489 5424 | 144c 8b54 | 2430 4c89 | 5424 1844 
+  0x00001526c5762ddc: 8b54 242c | 4489 5424 | 244c 8b54 | 2460 4c89 | 4424 304c | 8954 2438 | 448b 5c24 | 5c44 895c 
+  0x00001526c5762dfc: 2448 6690 
+
+  0x00001526c5762e00: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762e00: c5f8 77e8 
+
+  0x00001526c5762e04: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [56]=Oop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual toString {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@53 (line 663)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@3 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5762e04: f8a7 3aff | bede ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5c24 
+  0x00001526c5762e24: 2044 895c | 2418 448b | 5424 2444 | 8954 241c | 4c8b 5424 | 304c 8954 | 2420 6690 
+
+  0x00001526c5762e40: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762e40: c5f8 77e8 
+
+  0x00001526c5762e44: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*invokevirtual getBaseQualities {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualityCount@4 (line 300)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@10 (line 857)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5762e44: b8a7 3aff | c5fa 7f84 | 2480 0000 | 0049 8bf7 | c5f8 7749 | ba90 4065 | da26 1500 | 0041 ffd2 
+  0x00001526c5762e64: c5fa 6f84 | 2480 0000 | 00e9 84ca | ffff c5fa | 7f84 2480 | 0000 0049 | 8bf7 c5f8 | 7749 ba90 
+  0x00001526c5762e84: 4065 da26 | 1500 0041 | ffd2 c5fa | 6f84 2480 | 0000 00e9 | 2dbf ffff | c5fa 7f84 | 2480 0000 
+  0x00001526c5762ea4: 0049 8bf7 | c5f8 7749 | ba90 4065 | da26 1500 | 0041 ffd2 | c5fa 6f84 | 2480 0000 | 00e9 d6c1 
+  0x00001526c5762ec4: ffff be45 | ffff ff4c | 8b54 2408 | 4c89 1424 | 4c8b 5424 | 104c 8954 | 2408 448b | 5c24 2044 
+  0x00001526c5762ee4: 895c 2410 | 448b 5424 | 2444 8954 | 2414 4c8b | 5424 304c | 8954 2418 | 4c8b 5424 | 404c 8954 
+  0x00001526c5762f04: 2438 894c | 2440 6690 
+
+  0x00001526c5762f0c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762f0c: c5f8 77e8 
+
+  0x00001526c5762f10: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [56]=Oop [120]=Oop }
+                      ;*if_icmpeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.ArrayList$Itr::checkForComodification@11 (line 1012)
+                      ; - java.util.ArrayList$Itr::next@1 (line 967)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@72 (line 120)
+  0x00001526c5762f10: eca6 3aff | be45 ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5c24 
+  0x00001526c5762f30: 2044 895c | 2410 448b | 5424 2444 | 8954 2414 | 4c8b 5424 | 304c 8954 | 2418 894c | 2434 6690 
+  0x00001526c5762f50: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762f50: c5f8 77e8 
+
+  0x00001526c5762f54: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [64]=Oop [120]=Oop }
+                      ;*if_icmplt {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.ArrayList$Itr::next@17 (line 969)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@72 (line 120)
+  0x00001526c5762f54: a8a6 3aff | be45 ffff | ff48 8b6c | 2408 4c8b | 4424 104c | 8904 2444 | 8b44 2420 | 4489 4424 
+  0x00001526c5762f74: 0844 8b4c | 2424 4489 | 4c24 0c4c | 8b44 2430 | 4c89 4424 | 104c 8b44 | 2440 4c89 | 4424 3844 
+  0x00001526c5762f94: 8954 242c | 4489 5c24 | 4089 4c24 | 4466 6690 
+
+  0x00001526c5762fa4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762fa4: c5f8 77e8 
+
+  0x00001526c5762fa8: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [44]=NarrowOop [56]=Oop [120]=Oop }
+                      ;*if_icmplt {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.ArrayList$Itr::next@39 (line 972)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@72 (line 120)
+  0x00001526c5762fa8: 54a6 3aff | be45 ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5424 
+  0x00001526c5762fc8: 2044 8954 | 2418 448b | 5c24 2444 | 895c 241c | 4c8b 5424 | 304c 8954 | 2420 4c8b | 5424 604c 
+  0x00001526c5762fe8: 8954 2438 | 4c89 5424 | 4066 6690 
+
+  0x00001526c5762ff4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5762ff4: c5f8 77e8 
+
+  0x00001526c5762ff8: ; ImmutableOopMap {[0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [56]=Oop [64]=Oop [104]=Oop [120]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.lang.Character::isLetter@9 (line 9842)
+                      ; - java.lang.Character::isLetter@1 (line 9805)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::assertAttributeNameIsLegal@17 (line 336)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@1 (line 654)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@3 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5762ff8: 04a6 3aff | be45 ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5c24 
+  0x00001526c5763018: 2044 895c | 2418 448b | 5424 2444 | 8954 241c | 4c8b 5424 | 304c 8954 | 2420 4c8b | 5424 604c 
+  0x00001526c5763038: 8954 2438 | 4c89 5424 | 4066 6690 
+
+  0x00001526c5763044: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763044: c5f8 77e8 
+
+  0x00001526c5763048: ; ImmutableOopMap {[0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [56]=Oop [64]=Oop [104]=Oop [120]=Oop }
+                      ;*ifne {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.read.ReadUtils::assertAttributeNameIsLegal@31 (line 337)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@1 (line 654)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@3 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5763048: b4a5 3aff | be45 ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5c24 
+  0x00001526c5763068: 2044 895c | 2418 448b | 5424 2444 | 8954 241c | 4c8b 5424 | 304c 8954 | 2420 4c8b | 5424 604c 
+  0x00001526c5763088: 8954 2438 | 4c89 5424 | 4066 6690 
+
+  0x00001526c5763094: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763094: c5f8 77e8 
+
+  0x00001526c5763098: ; ImmutableOopMap {[0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [56]=Oop [64]=Oop [104]=Oop [120]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.lang.Character::isLetter@9 (line 9842)
+                      ; - java.lang.Character::isLetter@1 (line 9805)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::assertAttributeNameIsLegal@17 (line 336)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@1 (line 654)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@3 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5763098: 64a5 3aff | be45 ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5424 
+  0x00001526c57630b8: 2044 8954 | 2418 448b | 5c24 2444 | 895c 241c | 4c8b 5424 | 304c 8954 | 2420 4c8b | 5424 604c 
+  0x00001526c57630d8: 8954 2438 | 4c89 5424 | 4066 6690 
+
+  0x00001526c57630e4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57630e4: c5f8 77e8 
+
+  0x00001526c57630e8: ; ImmutableOopMap {[0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [56]=Oop [64]=Oop [104]=Oop [120]=Oop }
+                      ;*ifne {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.read.ReadUtils::assertAttributeNameIsLegal@31 (line 337)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@1 (line 654)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@3 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c57630e8: 14a5 3aff | bec6 ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b44 2414 | 4489 4424 | 0c4c 8b5c 
+  0x00001526c5763108: 2418 4c89 | 5c24 1044 | 8b5c 2420 | 4489 5c24 | 1889 5c24 | 204c 894c | 2428 4489 | 5424 3090 
+  0x00001526c5763128: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763128: c5f8 77e8 
+
+  0x00001526c576312c: ; ImmutableOopMap {[16]=Oop [40]=Oop [48]=NarrowOop [56]=Oop [64]=Oop }
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c576312c: d0a4 3aff | bec6 ffff | ff48 8b6c | 2438 448b | 5424 1044 | 8954 2408 | 448b 4424 | 1444 8944 
+  0x00001526c576314c: 240c 4c8b | 5424 184c | 8954 2410 | 448b 5424 | 2044 8954 | 2418 448b | 4424 4c44 | 895c 2438 
+  0x00001526c576316c: 4489 4424 | 3c66 6690 
+
+  0x00001526c5763174: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763174: c5f8 77e8 
+
+  0x00001526c5763178: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [56]=NarrowOop [64]=Oop }
+                      ;*invokeinterface getAllele {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763178: 84a4 3aff | bede ffff | ff66 6690 
+
+  0x00001526c5763184: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763184: c5f8 77e8 
+
+  0x00001526c5763188: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763188: 74a4 3aff | bec6 ffff | ff48 8b6c | 2438 448b | 5424 1044 | 8954 2408 | 448b 5c24 | 1444 895c 
+  0x00001526c57631a8: 240c 4c8b | 5424 184c | 8954 2410 | 448b 5424 | 2044 8954 | 2418 4489 | 4424 3844 | 894c 243c 
+  0x00001526c57631c8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57631c8: c5f8 77e8 
+
+  0x00001526c57631cc: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [56]=NarrowOop [64]=Oop }
+                      ;*invokevirtual get {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57631cc: 30a4 3aff | be45 ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5424 
+  0x00001526c57631ec: 2044 8954 | 2418 448b | 5c24 2444 | 895c 241c | 4c8b 5424 | 304c 8954 | 2420 4c8b | 5424 604c 
+  0x00001526c576320c: 8954 2438 | 448b 5424 | 5c44 8954 | 2448 4489 | 4424 5490 
+
+  0x00001526c5763220: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763220: c5f8 77e8 
+
+  0x00001526c5763224: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [56]=Oop [84]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMBinaryTagAndValue::find@22 (line 244)
+                      ; - htsjdk.samtools.SAMBinaryTagAndValue::find@32 (line 245)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@14 (line 1506)
+                      ; - htsjdk.samtools.BAMRecord::getAttribute@13 (line 393)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@3 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5763224: d8a3 3aff | be45 ffff | ff4c 8b54 | 2408 4c89 | 1424 4c8b | 5424 104c | 8954 2408 | 448b 5424 
+  0x00001526c5763244: 2044 8954 | 2418 448b | 5c24 2444 | 895c 241c | 4c8b 5424 | 304c 8954 | 2420 4c8b | 5424 604c 
+  0x00001526c5763264: 8954 2438 | 448b 5424 | 5c44 8954 | 2448 4489 | 4424 5490 
+
+  0x00001526c5763278: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763278: c5f8 77e8 
+
+  0x00001526c576327c: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [32]=Oop [44]=NarrowOop [56]=Oop [84]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMBinaryTagAndValue::find@22 (line 244)
+                      ; - htsjdk.samtools.SAMBinaryTagAndValue::find@32 (line 245)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@14 (line 1506)
+                      ; - htsjdk.samtools.BAMRecord::getAttribute@13 (line 393)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@3 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c576327c: 80a3 3aff | 33c9 e92b | deff ff33 | c9e9 8ade | ffff bec6 | ffff ff90 
+
+  0x00001526c5763294: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763294: c5f8 77e8 
+
+  0x00001526c5763298: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763298: 64a3 3aff | bee4 ffff | ff4c 8b54 | 2438 4c89 | 1424 4c8b | 5424 404c | 8954 2408 | 4489 5c24 
+  0x00001526c57632b8: 4044 895c | 2444 4c89 | 4c24 4890 
+
+  0x00001526c57632c4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57632c4: c5f8 77e8 
+
+  0x00001526c57632c8: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [48]=Oop [72]=Oop }
+                      ;*invokestatic checkIndex {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.Objects::checkIndex@3 (line 361)
+                      ; - java.util.ArrayList::get@5 (line 427)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57632c8: 34a3 3aff | bee4 ffff | ff4c 8b54 | 2438 4c89 | 1424 4c8b | 5424 404c | 8954 2408 | 4489 4c24 
+  0x00001526c57632e8: 4066 6690 
+
+  0x00001526c57632ec: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57632ec: c5f8 77e8 
+
+  0x00001526c57632f0: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [48]=Oop [64]=NarrowOop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList::elementData@5 (line 411)
+                      ; - java.util.ArrayList::get@11 (line 428)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57632f0: 0ca3 3aff | bede ffff | ff4c 8b54 | 2438 4c89 | 1424 4c8b | 5424 404c | 8954 2408 | 448b 5c24 
+  0x00001526c5763310: 4c44 895c | 2440 4489 | 5c24 444c | 8944 2448 
+
+  0x00001526c5763320: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763320: c5f8 77e8 
+
+  0x00001526c5763324: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [24]=Oop [48]=Oop [72]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@5 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763324: d8a2 3aff | becc ffff | ff4c 8b54 | 2438 4c89 | 1424 4c8b | 5424 404c | 8954 2408 | 448b 5424 
+  0x00001526c5763344: 4c44 8954 | 2440 4489 | 5424 444c | 894c 2448 
+
+  0x00001526c5763354: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763354: c5f8 77e8 
+
+  0x00001526c5763358: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [48]=Oop [72]=Oop }
+                      ;*invokestatic checkIndex {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.Objects::checkIndex@3 (line 361)
+                      ; - java.util.ArrayList::get@5 (line 427)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763358: a4a2 3aff | bec6 ffff | ff44 8954 | 2408 8b4c | 2414 894c | 240c 4c8b | 5424 184c | 8954 2410 
+  0x00001526c5763378: 4489 4c24 | 1844 895c | 241c 4489 | 4424 2090 
+
+  0x00001526c5763388: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763388: c5f8 77e8 
+
+  0x00001526c576338c: ; ImmutableOopMap {[16]=Oop [32]=NarrowOop [56]=Oop [64]=Oop }
+                      ;*invokeinterface asListOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::alleles@4 (line 490)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::alleles@4 (line 1414)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@253 (line 143)
+  0x00001526c576338c: 70a2 3aff | bec6 ffff | ff48 8b6c | 2438 448b | 4424 1044 | 8944 2408 | 448b 5c24 | 1444 895c 
+  0x00001526c57633ac: 240c 4c8b | 5c24 184c | 895c 2410 | 448b 4424 | 2044 8944 | 2418 448b | 5c24 4c44 | 895c 2438 
+  0x00001526c57633cc: 4489 5424 | 3c66 6690 
+
+  0x00001526c57633d4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57633d4: c5f8 77e8 
+
+  0x00001526c57633d8: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [60]=NarrowOop [64]=Oop }
+                      ;*invokeinterface getAllele {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57633d8: 24a2 3aff | 4c8b 5424 | 1845 8b5a | 2845 85db | 0f84 f8e2 | ffff 4d8b | 5720 498b | fb48 c1e7 
+  0x00001526c57633f8: 034d 85d2 | 0f84 7b06 | 0000 4d8b | 5f30 4b89 | 7c13 f849 | 83c2 f84d | 8957 20e9 | cee2 ffff 
+  0x00001526c5763418: 4d8b 5750 | 4d8b 5f40 | f083 4424 | c000 803f | 000f 84f8 | e2ff ff44 | 8827 4d85 | db75 1849 
+  0x00001526c5763438: 8bf7 c5f8 | 7749 bac0 | 4065 da26 | 1500 0041 | ffd2 e9d8 | e2ff ff4b | 897c 1af8 | 4983 c3f8 
+  0x00001526c5763458: 4d89 5f40 | e9c6 e2ff | ffbe 45ff | ffff 4c8b | 5424 384c | 8914 244c | 8b54 2440 | 4c89 5424 
+  0x00001526c5763478: 0844 8b5c | 2450 4489 | 5c24 2444 | 8b54 2458 | 4489 5424 | 284c 8b54 | 2460 4c89 | 5424 384c 
+  0x00001526c5763498: 8b54 2448 | 4c89 5424 | 4089 5424 | 2c44 8944 | 2450 4889 | 4c24 6044 | 894c 2454 
+
+  0x00001526c57634b4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57634b4: c5f8 77e8 
+
+  0x00001526c57634b8: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [44]=NarrowOop [48]=Oop [56]=Oop [64]=Oop [96]=Oop }
+                      ;*if_icmpne {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.haplotype.Haplotype::equals@18 (line 166)
+                      ; - java.util.HashMap::getNode@63 (line 570)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c57634b8: 44a1 3aff | 448b 5d28 | 4585 db0f | 84a1 e2ff | ff4d 8b57 | 2049 8bfb | 48c1 e703 | 4d85 d20f 
+  0x00001526c57634d8: 84b8 0500 | 004d 8b5f | 304b 897c | 13f8 4983 | c2f8 4d89 | 5720 e977 | e2ff ff4d | 8b57 504d 
+  0x00001526c57634f8: 8b5f 40f0 | 8344 24c0 | 0080 3f00 | 0f84 9ce2 | ffff 4488 | 274d 85db | 7518 498b | f7c5 f877 
+  0x00001526c5763518: 49ba c040 | 65da 2615 | 0000 41ff | d2e9 7ce2 | ffff 4b89 | 7c1a f849 | 83c3 f84d | 895f 40e9 
+  0x00001526c5763538: 6ae2 ffff | bede ffff | ff66 6690 
+
+  0x00001526c5763544: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763544: c5f8 77e8 
+
+  0x00001526c5763548: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763548: b4a0 3aff | be45 ffff | ff4c 8b54 | 2438 4c89 | 1424 4c8b | 5424 404c | 8954 2408 | 448b 5c24 
+  0x00001526c5763568: 5044 895c | 2424 448b | 5c24 4c44 | 895c 2440 | 4489 5c24 | 444c 8944 | 2450 6690 
+
+  0x00001526c5763584: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763584: c5f8 77e8 
+
+  0x00001526c5763588: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [48]=Oop [80]=Oop }
+                      ;*ifge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::validIndex@1 (line 770)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@8 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763588: 74a0 3aff | be45 ffff | ff4c 8b54 | 2438 4c89 | 1424 4c8b | 5424 404c | 8954 2408 | 448b 5c24 
+  0x00001526c57635a8: 5044 895c | 2424 448b | 5c24 4c44 | 895c 2440 | 4489 5c24 | 444c 8944 | 2450 6690 
+
+  0x00001526c57635c4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57635c4: c5f8 77e8 
+
+  0x00001526c57635c8: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [48]=Oop [80]=Oop }
+                      ;*if_icmplt {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::validIndex@20 (line 772)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@8 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57635c8: 34a0 3aff | bede ffff | ff49 8bee | 4889 1424 | 4889 4c24 | 1866 6690 
+
+  0x00001526c57635e0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57635e0: c5f8 77e8 
+
+  0x00001526c57635e4: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [32]=Oop }
+                      ;*invokeinterface isEmpty {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@1 (line 110)
+  0x00001526c57635e4: 18a0 3aff | 4863 cbe9 | 30b4 ffff | bede ffff | ff49 8bee | 4c89 2c24 | 895c 2408 | 4c8b 5c24 
+  0x00001526c5763604: 204c 895c | 2418 6690 
+
+  0x00001526c576360c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576360c: c5f8 77e8 
+
+  0x00001526c5763610: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [24]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c5763610: ec9f 3aff | bee4 ffff | ff4c 8b5c | 2438 4c89 | 1c24 4c8b | 5c24 404c | 895c 2408 | 4489 5424 
+  0x00001526c5763630: 4044 8954 | 2444 4889 | 4c24 4890 
+
+  0x00001526c576363c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576363c: c5f8 77e8 
+
+  0x00001526c5763640: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [48]=Oop [72]=Oop }
+                      ;*invokestatic checkIndex {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.Objects::checkIndex@3 (line 361)
+                      ; - java.util.ArrayList::get@5 (line 427)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763640: bc9f 3aff | bee4 ffff | ff4c 8b54 | 2438 4c89 | 1424 4c8b | 5424 404c | 8954 2408 | 4489 4424 
+  0x00001526c5763660: 4066 6690 
+
+  0x00001526c5763664: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763664: c5f8 77e8 
+
+  0x00001526c5763668: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [48]=Oop [64]=NarrowOop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList::elementData@5 (line 411)
+                      ; - java.util.ArrayList::get@11 (line 428)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763668: 949f 3aff | bede ffff | ff4c 8b54 | 2438 4c89 | 1424 4c8b | 5424 404c | 8954 2408 | 448b 5c24 
+  0x00001526c5763688: 4c44 895c | 2440 4489 | 5c24 444c | 894c 2448 
+
+  0x00001526c5763698: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763698: c5f8 77e8 
+
+  0x00001526c576369c: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [24]=Oop [48]=Oop [72]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@5 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c576369c: 609f 3aff | becc ffff | ff4c 8b5c | 2438 4c89 | 1c24 4c8b | 5c24 404c | 895c 2408 | 4489 5424 
+  0x00001526c57636bc: 4044 8954 | 2444 4889 | 4c24 4890 
+
+  0x00001526c57636c8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57636c8: c5f8 77e8 
+
+  0x00001526c57636cc: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [48]=Oop [72]=Oop }
+                      ;*invokestatic checkIndex {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.Objects::checkIndex@3 (line 361)
+                      ; - java.util.ArrayList::get@5 (line 427)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57636cc: 309f 3aff | 85ff 400f | 95c5 400f | b6ed be76 | ffff ff4c | 8934 244c | 8944 2408 | 895c 2410 
+  0x00001526c57636ec: 4489 5c24 | 144c 894c | 2418 4489 | 5424 204c | 896c 2428 | 4889 5424 | 3066 6690 
+
+  0x00001526c5763708: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763708: c5f8 77e8 
+
+  0x00001526c576370c: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [40]=Oop [48]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@67 (line 120)
+  0x00001526c576370c: f09e 3aff | bec6 ffff | ff66 6690 
+
+  0x00001526c5763718: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763718: c5f8 77e8 
+
+  0x00001526c576371c: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c576371c: e09e 3aff | be45 ffff | ff4c 8b54 | 2438 4c89 | 1424 4c8b | 5424 404c | 8954 2408 | 448b 5424 
+  0x00001526c576373c: 5044 8954 | 2424 448b | 4c24 5844 | 894c 2428 | 4c8b 5424 | 604c 8954 | 2438 4c8b | 5424 484c 
+  0x00001526c576375c: 8954 2440 | 8954 242c | 4489 4424 | 5044 895c | 2454 4889 | 4c24 5890 
+
+  0x00001526c5763774: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763774: c5f8 77e8 
+
+  0x00001526c5763778: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [44]=NarrowOop [48]=Oop [56]=Oop [64]=Oop [84]=NarrowOop [88]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.variant.variantcontext.SimpleAllele::getBases@4 (line 157)
+                      ; - org.broadinstitute.hellbender.utils.haplotype.Haplotype::equals@43 (line 168)
+                      ; - java.util.HashMap::getNode@63 (line 570)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c5763778: 849e 3aff | bec6 ffff | ff44 8b44 | 2410 4489 | 4424 0844 | 8b5c 2414 | 4489 5c24 | 0c4c 8b5c 
+  0x00001526c5763798: 2418 4c89 | 5c24 1044 | 8b44 2420 | 4489 4424 | 1844 8954 | 242c 6690 
+
+  0x00001526c57637b0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57637b0: c5f8 77e8 
+
+  0x00001526c57637b4: ; ImmutableOopMap {[16]=Oop [44]=NarrowOop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c57637b4: 489e 3aff | bec6 ffff | ff4c 8b54 | 2438 4c89 | 1424 4c8b | 5424 404c | 8954 2408 | 448b 5c24 
+  0x00001526c57637d4: 4c44 895c | 2440 6690 
+
+  0x00001526c57637dc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57637dc: c5f8 77e8 
+
+  0x00001526c57637e0: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [24]=Oop [48]=Oop }
+                      ;*invokeinterface getAllele {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57637e0: 1c9e 3aff | bede ffff | ff4c 8934 | 244c 8944 | 2408 4c89 | 6c24 1089 | 5c24 1890 
+
+  0x00001526c57637fc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57637fc: c5f8 77e8 
+
+  0x00001526c5763800: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [16]=Oop [32]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c5763800: fc9d 3aff | 4863 cae9 | 74c8 ffff | be87 0000 | 0049 8bee | 895c 2408 | 448b 5c24 | 1444 895c 
+  0x00001526c5763820: 240c 6690 
+
+  0x00001526c5763824: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763824: c5f8 77e8 
+
+  0x00001526c5763828: ; ImmutableOopMap {rbp=Oop [24]=Oop [64]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=0}
+                      ; - com.intel.gkl.pairhmm.IntelPairHmm::computeLikelihoods@12 (line 135)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@231 (line 138)
+  0x00001526c5763828: d49d 3aff | bede ffff | ff44 8954 | 2428 4489 | 5c24 2c90 
+
+  0x00001526c576383c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576383c: c5f8 77e8 
+
+  0x00001526c5763840: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [40]=NarrowOop [44]=NarrowOop [56]=Oop [64]=Oop }
+                      ;*invokeinterface computeLikelihoods {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@231 (line 138)
+  0x00001526c5763840: bc9d 3aff | bede ffff | ff4c 8b54 | 2430 4c89 | 5424 2890 
+
+  0x00001526c5763854: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763854: c5f8 77e8 
+
+  0x00001526c5763858: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [40]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763858: a49d 3aff | be45 ffff | ff4c 8934 | 244c 896c | 2408 6690 
+
+  0x00001526c576386c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576386c: c5f8 77e8 
+
+  0x00001526c5763870: ; ImmutableOopMap {[0]=Oop [8]=Oop [16]=Oop [32]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@16 (line 113)
+  0x00001526c5763870: 8c9d 3aff | be45 ffff | ff4c 8b5c | 2438 4c89 | 1c24 4c8b | 5c24 404c | 895c 2408 | 448b 5c24 
+  0x00001526c5763890: 5044 895c | 2424 4489 | 5424 4044 | 8954 2444 | 4c89 4c24 | 5066 6690 
+
+  0x00001526c57638a8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57638a8: c5f8 77e8 
+
+  0x00001526c57638ac: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [48]=Oop [80]=Oop }
+                      ;*ifge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::validIndex@1 (line 770)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@8 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57638ac: 509d 3aff | be45 ffff | ff4c 8b5c | 2438 4c89 | 1c24 4c8b | 5c24 404c | 895c 2408 | 448b 4424 
+  0x00001526c57638cc: 5044 8944 | 2424 4489 | 5424 4044 | 8954 2444 | 4c89 4c24 | 5066 6690 
+
+  0x00001526c57638e4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57638e4: c5f8 77e8 
+
+  0x00001526c57638e8: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop [48]=Oop [80]=Oop }
+                      ;*if_icmplt {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::validIndex@20 (line 772)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@8 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57638e8: 149d 3aff | bec6 ffff | ff4c 8934 | 244c 8944 | 2408 4c89 | 6c24 1089 | 5c24 1890 
+
+  0x00001526c5763904: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763904: c5f8 77e8 
+
+  0x00001526c5763908: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [16]=Oop [32]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c5763908: f49c 3aff | bec6 ffff | ff4c 8b54 | 2430 4c89 | 5424 2890 
+
+  0x00001526c576391c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576391c: c5f8 77e8 
+
+  0x00001526c5763920: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [40]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763920: dc9c 3aff | 4c89 6c24 | 1889 7424 | 0448 896c | 2410 4c89 | 4c24 0844 | 891c 2449 | 8be8 448b 
+  0x00001526c5763940: eb49 8bf7 | c5f8 7749 | ba90 4065 | da26 1500 | 0041 ffd2 | 418b dd4c | 8bc5 448b | 1c24 4c8b 
+  0x00001526c5763960: 4c24 0848 | 8b6c 2410 | 8b74 2404 | 4c8b 6c24 | 18e9 eec7 | ffff be45 | ffff ff4c | 8934 244c 
+  0x00001526c5763980: 8944 2408 | 895c 2410 | 4489 5c24 | 144c 894c | 2418 6690 
+
+  0x00001526c5763994: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763994: c5f8 77e8 
+
+  0x00001526c5763998: ; ImmutableOopMap {[0]=Oop [8]=Oop [24]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@202 (line 132)
+  0x00001526c5763998: 649c 3aff | be45 ffff | ff66 6690 
+
+  0x00001526c57639a4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57639a4: c5f8 77e8 
+
+  0x00001526c57639a8: ; ImmutableOopMap {[56]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@410 (line 154)
+  0x00001526c57639a8: 549c 3aff | bede ffff | ff4c 8934 | 244c 8944 | 2408 4c89 | 6c24 1089 | 5c24 1890 
+
+  0x00001526c57639c4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57639c4: c5f8 77e8 
+
+  0x00001526c57639c8: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [16]=Oop [32]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c57639c8: 349c 3aff | bede ffff | ff4c 8b54 | 2430 4c89 | 5424 2890 
+
+  0x00001526c57639dc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57639dc: c5f8 77e8 
+
+  0x00001526c57639e0: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [40]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c57639e0: 1c9c 3aff | bec6 ffff | ff4c 8934 | 244c 8944 | 2408 4c89 | 6c24 1089 | 5c24 1890 
+
+  0x00001526c57639fc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57639fc: c5f8 77e8 
+
+  0x00001526c5763a00: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [16]=Oop [32]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c5763a00: fc9b 3aff | bec6 ffff | ff4c 8b54 | 2430 4c89 | 5424 2890 
+
+  0x00001526c5763a14: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763a14: c5f8 77e8 
+
+  0x00001526c5763a18: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [40]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763a18: e49b 3aff | 498b f7c5 | f877 49ba | 9040 65da | 2615 0000 | 41ff d2e9 | 62d7 ffff | 4889 1c24 
+  0x00001526c5763a38: e948 c5ff | ff49 8bf7 | c5f8 7749 | ba90 4065 | da26 1500 | 0041 ffd2 | e9ad d9ff | ff49 8bf7 
+  0x00001526c5763a58: c5f8 7749 | ba90 4065 | da26 1500 | 0041 ffd2 | e9d1 daff | ff48 8beb | e93a c5ff | ff48 8beb 
+  0x00001526c5763a78: e986 c5ff | ff49 8bf7 | c5f8 7749 | ba90 4065 | da26 1500 | 0041 ffd2 | e951 dcff | ff49 8bf7 
+  0x00001526c5763a98: c5f8 7749 | ba90 4065 | da26 1500 | 0041 ffd2 | e9bd dcff | ff48 891c | 24e9 ecb7 | ffff 488b 
+  0x00001526c5763ab8: ebe9 91b3 | ffff bede | ffff ff4c | 8b54 2408 | 4c89 1424 | 4c8b 5424 | 104c 8954 | 2408 448b 
+  0x00001526c5763ad8: 5c24 2044 | 895c 2410 | 448b 5424 | 2444 8954 | 2414 4c8b | 5424 304c | 8954 2418 
+
+  0x00001526c5763af4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763af4: c5f8 77e8 
+
+  0x00001526c5763af8: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [24]=Oop [64]=Oop [120]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@77 (line 120)
+  0x00001526c5763af8: 049b 3aff | bede ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 
+  0x00001526c5763b18: 2418 4c89 | 5424 1044 | 8b54 2420 | 4489 5424 | 1848 ff74 | 2430 488f | 4424 2848 | 8944 2430 
+  0x00001526c5763b38: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763b38: c5f8 77e8 
+
+  0x00001526c5763b3c: ; ImmutableOopMap {[16]=Oop [40]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@282 (line 143)
+  0x00001526c5763b3c: c09a 3aff | bede ffff | ff48 8b6c | 2438 4c8b | 5c24 404c | 891c 2444 | 8b5c 2410 | 4489 5c24 
+  0x00001526c5763b5c: 0844 8b4c | 2414 4489 | 4c24 0c4c | 8b5c 2418 | 4c89 5c24 | 1044 8b5c | 2420 4489 | 5c24 1844 
+  0x00001526c5763b7c: 8b4c 2450 | 4489 4c24 | 1c44 8b5c | 2458 4489 | 5c24 204c | 8b5c 2430 | 4c89 5c24 | 284c 8b5c 
+  0x00001526c5763b9c: 2460 4c89 | 5c24 304c | 8b5c 2448 | 4c89 5c24 | 3889 5424 | 2444 8944 | 2448 4489 | 5424 5890 
+  0x00001526c5763bbc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763bbc: c5f8 77e8 
+
+  0x00001526c5763bc0: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [36]=NarrowOop [40]=Oop [48]=Oop [56]=Oop [88]=NarrowOop }
+                      ;*instanceof {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.haplotype.Haplotype::equals@1 (line 165)
+                      ; - java.util.HashMap::getNode@63 (line 570)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c5763bc0: 3c9a 3aff | bede ffff | ff44 8b44 | 2410 4489 | 4424 0844 | 8b5c 2414 | 4489 5c24 | 0c4c 8b5c 
+  0x00001526c5763be0: 2418 4c89 | 5c24 1044 | 8b44 2420 | 4489 4424 | 184c 8b5c | 2430 4c89 | 5c24 2844 | 8954 2424 
+  0x00001526c5763c00: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763c00: c5f8 77e8 
+
+  0x00001526c5763c04: ; ImmutableOopMap {[16]=Oop [36]=NarrowOop [40]=Oop [56]=Oop [64]=Oop [96]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@298 (line 147)
+  0x00001526c5763c04: f899 3aff | bef6 ffff | ff44 8b44 | 2410 4489 | 4424 0844 | 8b5c 2414 | 4489 5c24 | 0c4c 8b5c 
+  0x00001526c5763c24: 2418 4c89 | 5c24 1044 | 8b44 2420 | 4489 4424 | 1844 894c | 241c 4489 | 5424 2090 
+
+  0x00001526c5763c40: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763c40: c5f8 77e8 
+
+  0x00001526c5763c44: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*getfield modCount {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.AbstractList$Itr::checkForComodification@4 (line 398)
+                      ; - java.util.AbstractList$Itr::next@1 (line 368)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763c44: b899 3aff | bef4 ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 
+  0x00001526c5763c64: 2418 4c89 | 5424 1044 | 8b5c 2420 | 4489 5c24 | 1866 6690 
+
+  0x00001526c5763c78: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763c78: c5f8 77e8 
+
+  0x00001526c5763c7c: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@282 (line 143)
+  0x00001526c5763c7c: 8099 3aff | bef6 ffff | ff48 8be8 
+
+  0x00001526c5763c88: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763c88: c5f8 77e8 
+
+  0x00001526c5763c8c: ; ImmutableOopMap {rbp=Oop }
+                      ;*invokeinterface get {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c5763c8c: 7099 3aff | bef6 ffff | ff8b ea90 
+
+  0x00001526c5763c98: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763c98: c5f8 77e8 
+
+  0x00001526c5763c9c: ; ImmutableOopMap {}
+                      ;*daload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@320 (line 148)
+  0x00001526c5763c9c: 6099 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763ca8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763ca8: c5f8 77e8 
+
+  0x00001526c5763cac: ; ImmutableOopMap {}
+                      ;*getfield valuesBySampleIndex {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::set@5 (line 1419)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@321 (line 148)
+  0x00001526c5763cac: 5099 3aff | bef6 ffff | ff41 8beb 
+
+  0x00001526c5763cb8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763cb8: c5f8 77e8 
+
+  0x00001526c5763cbc: ; ImmutableOopMap {}
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::set@12 (line 1419)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@321 (line 148)
+  0x00001526c5763cbc: 4099 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763cc8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763cc8: c5f8 77e8 
+
+  0x00001526c5763ccc: ; ImmutableOopMap {}
+                      ;*arraylength {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::set@13 (line 1419)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@321 (line 148)
+  0x00001526c5763ccc: 3099 3aff | bef6 ffff | ff41 8beb 
+
+  0x00001526c5763cd8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763cd8: c5f8 77e8 
+
+  0x00001526c5763cdc: ; ImmutableOopMap {}
+                      ;*iaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::set@30 (line 1420)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@321 (line 148)
+  0x00001526c5763cdc: 2099 3aff | bef6 ffff | ff41 8be8 | c5fb 1104 | 2466 6690 
+
+  0x00001526c5763cf0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763cf0: c5f8 77e8 
+
+  0x00001526c5763cf4: ; ImmutableOopMap {}
+                      ;*dastore {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::set@51 (line 1421)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@321 (line 148)
+  0x00001526c5763cf4: 0899 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763d00: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763d00: c5f8 77e8 
+
+  0x00001526c5763d04: ; ImmutableOopMap {}
+                      ;*getfield readBases {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@332 (line 149)
+  0x00001526c5763d04: f898 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763d10: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763d10: c5f8 77e8 
+
+  0x00001526c5763d14: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763d14: e898 3aff | bef6 ffff | ff48 8b6c | 2438 448b | 5c24 1044 | 895c 2408 | 448b 5424 | 1444 8954 
+  0x00001526c5763d34: 240c 4c8b | 5424 184c | 8954 2410 | 448b 5c24 | 2044 895c | 2418 4489 | 4c24 3890 
+
+  0x00001526c5763d50: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763d50: c5f8 77e8 
+
+  0x00001526c5763d54: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [64]=Oop }
+                      ;*invokeinterface getAllele {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763d54: a898 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763d60: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763d60: c5f8 77e8 
+
+  0x00001526c5763d64: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763d64: 9898 3aff | bef6 ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 
+  0x00001526c5763d84: 2418 4c89 | 5424 1044 | 8b54 2420 | 4489 5424 | 1866 6690 
+
+  0x00001526c5763d98: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763d98: c5f8 77e8 
+
+  0x00001526c5763d9c: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@5 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763d9c: 6098 3aff | bef6 ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 
+  0x00001526c5763dbc: 2418 4c89 | 5424 1044 | 8b5c 2420 | 4489 5c24 | 1866 6690 
+
+  0x00001526c5763dd0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763dd0: c5f8 77e8 
+
+  0x00001526c5763dd4: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@5 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763dd4: 2898 3aff | bef6 ffff | ff48 8b6c | 2438 448b | 5424 1044 | 8954 2408 | 448b 5c24 | 1444 895c 
+  0x00001526c5763df4: 240c 4c8b | 5424 184c | 8954 2410 | 448b 5c24 | 2044 895c | 2418 4489 | 4c24 3890 
+
+  0x00001526c5763e10: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763e10: c5f8 77e8 
+
+  0x00001526c5763e14: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [64]=Oop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList::elementData@5 (line 411)
+                      ; - java.util.ArrayList::get@11 (line 428)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763e14: e897 3aff | bef4 ffff | ff44 8b54 | 2410 4489 | 5424 0844 | 8b5c 2414 | 4489 5c24 | 0c4c 8b54 
+  0x00001526c5763e34: 2418 4c89 | 5424 1044 | 8b54 2420 | 4489 5424 | 1866 6690 
+
+  0x00001526c5763e48: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763e48: c5f8 77e8 
+
+  0x00001526c5763e4c: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@20 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5763e4c: b097 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763e58: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763e58: c5f8 77e8 
+
+  0x00001526c5763e5c: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763e5c: a097 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763e68: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763e68: c5f8 77e8 
+
+  0x00001526c5763e6c: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763e6c: 9097 3aff | be45 ffff | ff48 8b6c | 2438 4c8b | 4424 404c | 8904 2444 | 8b4c 2410 | 4489 4c24 
+  0x00001526c5763e8c: 0844 8b44 | 2414 4489 | 4424 0c4c | 8b44 2418 | 4c89 4424 | 1044 8b4c | 2420 4489 | 4c24 1844 
+  0x00001526c5763eac: 8b4c 2450 | 4489 4c24 | 1c4c 8b44 | 2430 4c89 | 4424 284c | 8b44 2448 | 4c89 4424 | 3848 8944 
+  0x00001526c5763ecc: 2440 4489 | 5424 2489 | 7c24 4844 | 895c 2450 
+
+  0x00001526c5763edc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763edc: c5f8 77e8 
+
+  0x00001526c5763ee0: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [36]=NarrowOop [40]=Oop [56]=Oop [64]=Oop [80]=NarrowOop [96]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.Arrays::hashCode@1 (line 4379)
+                      ; - org.broadinstitute.hellbender.utils.haplotype.Haplotype::hashCode@4 (line 173)
+                      ; - java.util.HashMap::hash@9 (line 338)
+                      ; - java.util.HashMap::getNode@23 (line 568)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c5763ee0: 1c97 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763eec: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763eec: c5f8 77e8 
+
+  0x00001526c5763ef0: ; ImmutableOopMap {}
+                      ;*arraylength {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList$Itr::next@38 (line 972)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@72 (line 120)
+  0x00001526c5763ef0: 0c97 3aff | bef4 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 | 8b5c 2420 | 4489 5c24 
+  0x00001526c5763f10: 0844 8b54 | 2424 4489 | 5424 0c4c | 8b54 2430 | 4c89 5424 | 1066 6690 
+
+  0x00001526c5763f28: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763f28: c5f8 77e8 
+
+  0x00001526c5763f2c: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [64]=Oop [120]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@77 (line 120)
+  0x00001526c5763f2c: d096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763f38: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763f38: c5f8 77e8 
+
+  0x00001526c5763f3c: ; ImmutableOopMap {}
+                      ;*invokevirtual getReadBases {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBases@4 (line 252)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@111 (line 123)
+  0x00001526c5763f3c: c096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763f48: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763f48: c5f8 77e8 
+
+  0x00001526c5763f4c: ; ImmutableOopMap {}
+                      ;*invokevirtual getBaseQualities {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualities@4 (line 286)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@126 (line 124)
+  0x00001526c5763f4c: b096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763f58: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763f58: c5f8 77e8 
+
+  0x00001526c5763f5c: ; ImmutableOopMap {}
+                      ;*invokevirtual getAttribute {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@3 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5763f5c: a096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763f68: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763f68: c5f8 77e8 
+
+  0x00001526c5763f6c: ; ImmutableOopMap {}
+                      ;*invokevirtual alleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::alleles@4 (line 1414)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@253 (line 143)
+  0x00001526c5763f6c: 9096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763f78: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763f78: c5f8 77e8 
+
+  0x00001526c5763f7c: ; ImmutableOopMap {}
+                      ;*invokeinterface asListOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::alleles@4 (line 490)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::alleles@4 (line 1414)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@253 (line 143)
+  0x00001526c5763f7c: 8096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763f88: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763f88: c5f8 77e8 
+
+  0x00001526c5763f8c: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763f8c: 7096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763f98: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763f98: c5f8 77e8 
+
+  0x00001526c5763f9c: ; ImmutableOopMap {}
+                      ;*invokevirtual getAttribute {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@3 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c5763f9c: 6096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763fa8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763fa8: c5f8 77e8 
+
+  0x00001526c5763fac: ; ImmutableOopMap {}
+                      ;*invokevirtual getReadBases {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getLength@4 (line 274)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::gapContinuationPenalties@4 (line 44)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@171 (line 127)
+  0x00001526c5763fac: 5096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763fb8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763fb8: c5f8 77e8 
+
+  0x00001526c5763fbc: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763fbc: 4096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763fc8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763fc8: c5f8 77e8 
+
+  0x00001526c5763fcc: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763fcc: 3096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763fd8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763fd8: c5f8 77e8 
+
+  0x00001526c5763fdc: ; ImmutableOopMap {}
+                      ;*getfield alleles {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@4 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763fdc: 2096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763fe8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763fe8: c5f8 77e8 
+
+  0x00001526c5763fec: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5763fec: 1096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5763ff8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5763ff8: c5f8 77e8 
+
+  0x00001526c5763ffc: ; ImmutableOopMap {}
+                      ;*invokevirtual getBaseQualities {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualityCount@4 (line 300)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@10 (line 841)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5763ffc: 0096 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764008: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764008: c5f8 77e8 
+
+  0x00001526c576400c: ; ImmutableOopMap {}
+                      ;*arraylength {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.lang.String::length@4 (line 1481)
+                      ; - htsjdk.samtools.SAMUtils::fastqToPhred@7 (line 400)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@8 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c576400c: f095 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764018: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764018: c5f8 77e8 
+
+  0x00001526c576401c: ; ImmutableOopMap {}
+                      ;*invokevirtual getBaseQualities {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getBaseQualityCount@4 (line 300)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@10 (line 857)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c576401c: e095 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764028: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764028: c5f8 77e8 
+
+  0x00001526c576402c: ; ImmutableOopMap {}
+                      ;*arraylength {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.lang.String::length@4 (line 1481)
+                      ; - htsjdk.samtools.SAMUtils::fastqToPhred@7 (line 400)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@8 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c576402c: d095 3aff | be45 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 | 8b54 2420 | 4489 5424 
+  0x00001526c576404c: 1044 8b5c | 2424 4489 | 5c24 144c | 8b54 2430 | 4c89 5424 | 1844 8b5c | 242c 4489 | 5c24 244c 
+  0x00001526c576406c: 8b54 2460 | 4c89 5424 | 3044 8b54 | 245c 4489 | 5424 4089 | 4c24 4c90 
+
+  0x00001526c5764084: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764084: c5f8 77e8 
+
+  0x00001526c5764088: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [76]=NarrowOop [96]=Oop [104]=Oop [120]=Oop [128]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMRecord::getAttribute@4 (line 1504)
+                      ; - htsjdk.samtools.BAMRecord::getAttribute@13 (line 393)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@3 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c5764088: 7495 3aff | be45 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 | 8b5c 2420 | 4489 5c24 
+  0x00001526c57640a8: 1044 8b54 | 2424 4489 | 5424 144c | 8b54 2430 | 4c89 5424 | 1844 8b54 | 242c 4489 | 5424 244c 
+  0x00001526c57640c8: 8b54 2460 | 4c89 5424 | 3044 8b5c | 245c 4489 | 5c24 4089 | 4c24 4c90 
+
+  0x00001526c57640e0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57640e0: c5f8 77e8 
+
+  0x00001526c57640e4: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [76]=NarrowOop [96]=Oop [104]=Oop [120]=Oop [128]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMRecord::getAttribute@4 (line 1504)
+                      ; - htsjdk.samtools.BAMRecord::getAttribute@13 (line 393)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@3 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c57640e4: 1895 3aff | bef6 ffff | ff48 8b6c | 2438 448b | 5c24 1044 | 895c 2408 | 448b 5424 | 1444 8954 
+  0x00001526c5764104: 240c 4c8b | 5424 184c | 8954 2410 | 448b 5c24 | 2044 895c | 2418 448b | 5c24 4c44 | 895c 2438 
+  0x00001526c5764124: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764124: c5f8 77e8 
+
+  0x00001526c5764128: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [64]=Oop }
+                      ;*invokevirtual getAllele {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5764128: d494 3aff | bef6 ffff | ff48 8b6c | 2438 448b | 5424 1044 | 8954 2408 | 448b 5c24 | 1444 895c 
+  0x00001526c5764148: 240c 4c8b | 5424 184c | 8954 2410 | 448b 5424 | 2044 8954 | 2418 448b | 5c24 4c44 | 895c 2438 
+  0x00001526c5764168: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764168: c5f8 77e8 
+
+  0x00001526c576416c: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [64]=Oop }
+                      ;*invokeinterface getAllele {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c576416c: 9094 3aff | be45 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 | 8b54 2420 | 4489 5424 
+  0x00001526c576418c: 1044 8b5c | 2424 4489 | 5c24 144c | 8b54 2430 | 4c89 5424 | 1844 8b5c | 242c 4489 | 5c24 244c 
+  0x00001526c57641ac: 8b54 2460 | 4c89 5424 | 3089 4c24 | 4c44 8944 | 2458 6690 
+
+  0x00001526c57641c0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57641c0: c5f8 77e8 
+
+  0x00001526c57641c4: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [76]=NarrowOop [88]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMBinaryTagAndValue::find@22 (line 244)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@14 (line 1506)
+                      ; - htsjdk.samtools.BAMRecord::getAttribute@13 (line 393)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseInsertionQualities@3 (line 822)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseInsertionQualities@1 (line 839)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::insOpenPenalties@4 (line 39)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@141 (line 125)
+  0x00001526c57641c4: 3894 3aff | be45 ffff | ff48 8b6c | 2408 4c8b | 5424 104c | 8914 2444 | 8b54 2420 | 4489 5424 
+  0x00001526c57641e4: 1044 8b5c | 2424 4489 | 5c24 144c | 8b54 2430 | 4c89 5424 | 1844 8b5c | 242c 4489 | 5c24 244c 
+  0x00001526c5764204: 8b54 2460 | 4c89 5424 | 3089 4c24 | 4c44 8944 | 2458 6690 
+
+  0x00001526c5764218: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764218: c5f8 77e8 
+
+  0x00001526c576421c: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [36]=NarrowOop [48]=Oop [76]=NarrowOop [88]=NarrowOop [96]=Oop [104]=Oop [120]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) htsjdk.samtools.SAMBinaryTagAndValue::find@22 (line 244)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@14 (line 1506)
+                      ; - htsjdk.samtools.BAMRecord::getAttribute@13 (line 393)
+                      ; - htsjdk.samtools.SAMRecord::getAttribute@5 (line 1170)
+                      ; - org.broadinstitute.hellbender.utils.read.SAMRecordToGATKReadAdapter::getAttributeAsString@9 (line 655)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getExistingBaseDeletionQualities@3 (line 829)
+                      ; - org.broadinstitute.hellbender.utils.read.ReadUtils::getBaseDeletionQualities@1 (line 855)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.StandardPairHMMInputScoreImputator$1::delOpenPenalties@4 (line 34)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@156 (line 126)
+  0x00001526c576421c: e093 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764228: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764228: c5f8 77e8 
+
+  0x00001526c576422c: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c576422c: d093 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764238: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764238: c5f8 77e8 
+
+  0x00001526c576423c: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c576423c: c093 3aff | bef4 ffff | ff48 8b6c | 2438 4c8b | 5424 404c | 8914 2444 | 8b5c 2410 | 4489 5c24 
+  0x00001526c576425c: 0844 8b54 | 2414 4489 | 5424 0c4c | 8b54 2418 | 4c89 5424 | 1044 8b5c | 2420 4489 | 5c24 1844 
+  0x00001526c576427c: 8b54 2450 | 4489 5424 | 1c4c 8b54 | 2430 4c89 | 5424 284c | 8b54 2460 | 4c89 5424 | 304c 8b54 
+  0x00001526c576429c: 2448 4c89 | 5424 3889 | 5424 2444 | 8944 2448 
+
+  0x00001526c57642ac: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57642ac: c5f8 77e8 
+
+  0x00001526c57642b0: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [36]=NarrowOop [40]=Oop [48]=Oop [56]=Oop }
+                      ;*instanceof {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.haplotype.Haplotype::equals@1 (line 165)
+                      ; - java.util.HashMap::getNode@63 (line 570)
+                      ; - java.util.LinkedHashMap::get@2 (line 441)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@293 (line 147)
+  0x00001526c57642b0: 4c93 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c57642bc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57642bc: c5f8 77e8 
+
+  0x00001526c57642c0: ; ImmutableOopMap {}
+                      ;*getfield alleles {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@4 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c57642c0: 3c93 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c57642cc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57642cc: c5f8 77e8 
+
+  0x00001526c57642d0: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c57642d0: 2c93 3aff | bef6 ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 
+  0x00001526c57642f0: 2418 4c89 | 5424 1044 | 8b5c 2420 | 4489 5c24 | 1866 6690 
+
+  0x00001526c5764304: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764304: c5f8 77e8 
+
+  0x00001526c5764308: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@5 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5764308: f492 3aff | bef6 ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 
+  0x00001526c5764328: 2418 4c89 | 5424 1044 | 8b54 2420 | 4489 5424 | 1866 6690 
+
+  0x00001526c576433c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576433c: c5f8 77e8 
+
+  0x00001526c5764340: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@5 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5764340: bc92 3aff | bef6 ffff | ff4c 8b54 | 2438 4c89 | 1424 6690 
+
+  0x00001526c5764354: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764354: c5f8 77e8 
+
+  0x00001526c5764358: ; ImmutableOopMap {[0]=Oop [24]=Oop [48]=Oop [64]=Oop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList::elementData@5 (line 411)
+                      ; - java.util.ArrayList::get@11 (line 428)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5764358: a492 3aff | bef4 ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 
+  0x00001526c5764378: 2418 4c89 | 5424 1044 | 8b5c 2420 | 4489 5c24 | 1866 6690 
+
+  0x00001526c576438c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576438c: c5f8 77e8 
+
+  0x00001526c5764390: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@20 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5764390: 6c92 3aff | bef6 ffff | ff48 8b6c | 2438 448b | 5424 1044 | 8954 2408 | 448b 5c24 | 1444 895c 
+  0x00001526c57643b0: 240c 4c8b | 5424 184c | 8954 2410 | 448b 5424 | 2044 8954 | 2418 448b | 5424 4c44 | 8954 2438 
+  0x00001526c57643d0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57643d0: c5f8 77e8 
+
+  0x00001526c57643d4: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [64]=Oop }
+                      ;*invokevirtual getAllele {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57643d4: 2892 3aff | bef6 ffff | ff48 8b6c | 2438 448b | 5c24 1044 | 895c 2408 | 448b 5424 | 1444 8954 
+  0x00001526c57643f4: 240c 4c8b | 5424 184c | 8954 2410 | 448b 5c24 | 2044 895c | 2418 448b | 5424 4c44 | 8954 2438 
+  0x00001526c5764414: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764414: c5f8 77e8 
+
+  0x00001526c5764418: ; ImmutableOopMap {rbp=Oop [16]=Oop [48]=Oop [64]=Oop }
+                      ;*invokeinterface getAllele {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5764418: e491 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764424: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764424: c5f8 77e8 
+
+  0x00001526c5764428: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5764428: d491 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764434: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764434: c5f8 77e8 
+
+  0x00001526c5764438: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5764438: c491 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764444: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764444: c5f8 77e8 
+
+  0x00001526c5764448: ; ImmutableOopMap {}
+                      ;*invokeinterface isEmpty {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@1 (line 110)
+  0x00001526c5764448: b491 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764454: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764454: c5f8 77e8 
+
+  0x00001526c5764458: ; ImmutableOopMap {}
+                      ;*invokevirtual booleanValue {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@13 (line 113)
+  0x00001526c5764458: a491 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764464: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764464: c5f8 77e8 
+
+  0x00001526c5764468: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c5764468: 9491 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764474: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764474: c5f8 77e8 
+
+  0x00001526c5764478: ; ImmutableOopMap {}
+                      ;*getfield alleles {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@4 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c5764478: 8491 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764484: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764484: c5f8 77e8 
+
+  0x00001526c5764488: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c5764488: 7491 3aff | bef6 ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 
+  0x00001526c57644a8: 2418 4c89 | 5424 1044 | 8b54 2420 | 4489 5424 | 1866 6690 
+
+  0x00001526c57644bc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57644bc: c5f8 77e8 
+
+  0x00001526c57644c0: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@5 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57644c0: 3c91 3aff | bef6 ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 
+  0x00001526c57644e0: 2418 4c89 | 5424 1044 | 8b5c 2420 | 4489 5c24 | 1866 6690 
+
+  0x00001526c57644f4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57644f4: c5f8 77e8 
+
+  0x00001526c57644f8: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@5 (line 73)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c57644f8: 0491 3aff | bef6 ffff | ff4c 8b54 | 2438 4c89 | 1424 6690 
+
+  0x00001526c576450c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c576450c: c5f8 77e8 
+
+  0x00001526c5764510: ; ImmutableOopMap {[0]=Oop [24]=Oop [48]=Oop [64]=Oop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList::elementData@5 (line 411)
+                      ; - java.util.ArrayList::get@11 (line 428)
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::get@14 (line 285)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@17 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5764510: ec90 3aff | bef4 ffff | ff44 8b5c | 2410 4489 | 5c24 0844 | 8b54 2414 | 4489 5424 | 0c4c 8b54 
+  0x00001526c5764530: 2418 4c89 | 5424 1044 | 8b54 2420 | 4489 5424 | 1866 6690 
+
+  0x00001526c5764544: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764544: c5f8 77e8 
+
+  0x00001526c5764548: ; ImmutableOopMap {[16]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::getAllele@20 (line 74)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::getAllele@5 (line 322)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::getAllele@5 (line 1455)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@5 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::get@2 (line 136)
+                      ; - java.util.AbstractList$Itr::next@14 (line 371)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5764548: b490 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764554: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764554: c5f8 77e8 
+
+  0x00001526c5764558: ; ImmutableOopMap {}
+                      ;*getfield alleles {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@4 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5764558: a490 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764564: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764564: c5f8 77e8 
+
+  0x00001526c5764568: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c5764568: 9490 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764574: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764574: c5f8 77e8 
+
+  0x00001526c5764578: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c5764578: 8490 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764584: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764584: c5f8 77e8 
+
+  0x00001526c5764588: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c5764588: 7490 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764594: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764594: c5f8 77e8 
+
+  0x00001526c5764598: ; ImmutableOopMap {}
+                      ;*invokevirtual booleanValue {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@199 (line 132)
+  0x00001526c5764598: 6490 3aff | bef6 ffff | ff44 895c | 2408 6690 
+
+  0x00001526c57645a8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57645a8: c5f8 77e8 
+
+  0x00001526c57645ac: ; ImmutableOopMap {rbp=NarrowOop [8]=NarrowOop [24]=Oop }
+                      ;*invokeinterface computeLikelihoods {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@231 (line 138)
+  0x00001526c57645ac: 5090 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c57645b8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57645b8: c5f8 77e8 
+
+  0x00001526c57645bc: ; ImmutableOopMap {}
+                      ;*invokevirtual booleanValue {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@407 (line 154)
+  0x00001526c57645bc: 4090 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c57645c8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57645c8: c5f8 77e8 
+
+  0x00001526c57645cc: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c57645cc: 3090 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c57645d8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57645d8: c5f8 77e8 
+
+  0x00001526c57645dc: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c57645dc: 2090 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c57645e8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57645e8: c5f8 77e8 
+
+  0x00001526c57645ec: ; ImmutableOopMap {}
+                      ;*getfield alleles {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@4 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c57645ec: 1090 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c57645f8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57645f8: c5f8 77e8 
+
+  0x00001526c57645fc: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c57645fc: 0090 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764608: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764608: c5f8 77e8 
+
+  0x00001526c576460c: ; ImmutableOopMap {}
+                      ;*getfield alleles {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@4 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c576460c: f08f 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764618: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764618: c5f8 77e8 
+
+  0x00001526c576461c: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c576461c: e08f 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764628: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764628: c5f8 77e8 
+
+  0x00001526c576462c: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c576462c: d08f 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764638: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764638: c5f8 77e8 
+
+  0x00001526c576463c: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@35 (line 117)
+  0x00001526c576463c: c08f 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764648: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764648: c5f8 77e8 
+
+  0x00001526c576464c: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c576464c: b08f 3aff | bef6 ffff | ff66 6690 
+
+  0x00001526c5764658: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764658: c5f8 77e8 
+
+  0x00001526c576465c: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::numberOfAlleles@7 (line 1445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleList$2::size@4 (line 145)
+                      ; - java.util.AbstractList$Itr::hasNext@8 (line 364)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@267 (line 143)
+  0x00001526c576465c: a08f 3aff | 488b f0e9 | 2c01 0000 | 488b f0e9 | 2401 0000 | 488b f0e9 | 1c01 0000 | e90f 0100 
+  0x00001526c576467c: 00e9 0a01 | 0000 e900 | 0100 00e9 | fb00 0000 | 488b f0e9 | 0001 0000 | 488b f0e9 | f800 0000 
+  0x00001526c576469c: 488b f0e9 | f000 0000 | 488b f0e9 | e800 0000 | 488b f0e9 | e000 0000 | 488b f0e9 | d800 0000 
+  0x00001526c57646bc: eb00 488b | f0e9 ce00 | 0000 e9c1 | 0000 00e9 | bc00 0000 | e9b2 0000 | 00e9 ad00 | 0000 488b 
+  0x00001526c57646dc: f0e9 b200 | 0000 488b | f0e9 aa00 | 0000 488b | f0e9 a200 | 0000 448b 
+
+  0x00001526c57646f4: ;   {metadata('java/lang/OutOfMemoryError')}
+  0x00001526c57646f4: 5008 4181 | fac8 b704 | 000f 84a1 
+
+  0x00001526c5764700: ;   {metadata('java/lang/IllegalArgumentException')}
+  0x00001526c5764700: 0000 0049 | bbb8 9c04 | 1f26 1500 | 0049 b800 | 0000 1f26 | 1500 004d | 03c2 4d8b | 5050 4d3b 
+  0x00001526c5764720: d30f 848d | 0000 0048 | 8bf0 eb68 | 448b 5808 | eb04 448b 
+
+  0x00001526c5764734: ;   {metadata('java/lang/IndexOutOfBoundsException')}
+  0x00001526c5764734: 5808 49ba | 20cb 1420 | 2615 0000 | 49b8 0000 | 001f 2615 | 0000 4d03 | c34d 8b58 | 504d 3bda 
+  0x00001526c5764754: 7522 488b | e848 8b74 | 2430 6690 
+
+  0x00001526c5764760: ;   {optimized virtual_call}
+  0x00001526c5764760: c5f8 77e8 
+
+  0x00001526c5764764: ; ImmutableOopMap {rbp=Oop [24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokevirtual checkForComodification {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.AbstractList$Itr::next@34 (line 376)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5764764: 1839 3aff | be29 0000 | 0066 6690 
+
+  0x00001526c5764770: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5764770: c5f8 77e8 
+
+  0x00001526c5764774: ; ImmutableOopMap {rbp=Oop [24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.AbstractList$Itr::next@37 (line 377)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@277 (line 143)
+  0x00001526c5764774: 888e 3aff | 488b f0eb | 1748 8bf0 | eb12 488b | f0eb 0d48 | 8bf0 eb08 | 488b f0eb | 0348 8bf0 
+  0x00001526c5764794: c5f8 7748 | 81c4 d000 
+
+  0x00001526c576479c: ;   {runtime_call _rethrow_Java}
+  0x00001526c576479c: 0000 5de9 | dc13 45ff | 488b e8be | 9500 0000 
+
+  0x00001526c57647ac: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57647ac: c5f8 77e8 
+
+  0x00001526c57647b0: ; ImmutableOopMap {rbp=Oop [24]=Oop [56]=Oop [64]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=0}
+                      ; - com.intel.gkl.pairhmm.IntelPairHmm::computeLikelihoods@37 (line 140)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@231 (line 138)
+  0x00001526c57647b0: 4c8e 3aff | 488b e8be | 9500 0000 
+
+  0x00001526c57647bc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c57647bc: c5f8 77e8 
+
+  0x00001526c57647c0: ; ImmutableOopMap {rbp=Oop [24]=Oop [56]=Oop [64]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=0}
+                      ; - com.intel.gkl.pairhmm.IntelPairHmm::computeLikelihoods@80 (line 143)
+                      ; - org.broadinstitute.hellbender.utils.pairhmm.VectorLoglessPairHMM::computeLog10Likelihoods@231 (line 138)
+  0x00001526c57647c0: 3c8e 3aff 
+
+  0x00001526c57647c4: ;   {internal_word}
+  0x00001526c57647c4: 49ba df0f | 76c5 2615 | 0000 4d89 | 9760 0300 
+
+  0x00001526c57647d4: ;   {runtime_call SafepointBlob}
+  0x00001526c57647d4: 00e9 269f | 3aff f4f4 | f4f4 f4f4 
+[Stub Code]
+  0x00001526c57647e0: ;   {no_reloc}
+  0x00001526c57647e0: 48bb 0000 | 0000 0000 
+
+  0x00001526c57647e8: ;   {runtime_call}
+  0x00001526c57647e8: 0000 e9fb 
+
+  0x00001526c57647ec: ;   {static_stub}
+  0x00001526c57647ec: ffff ff48 | bb00 0000 | 0000 0000 
+
+  0x00001526c57647f8: ;   {runtime_call}
+  0x00001526c57647f8: 00e9 fbff 
+
+  0x00001526c57647fc: ;   {static_stub}
+  0x00001526c57647fc: ffff 48bb | 0000 0000 | 0000 0000 
+
+  0x00001526c5764808: ;   {runtime_call}
+  0x00001526c5764808: e9fb ffff 
+
+  0x00001526c576480c: ;   {static_stub}
+  0x00001526c576480c: ff48 bb00 | 0000 0000 
+
+  0x00001526c5764814: ;   {runtime_call}
+  0x00001526c5764814: 0000 00e9 | fbff ffff 
+
+  0x00001526c576481c: ;   {static_stub}
+  0x00001526c576481c: 48bb 0000 | 0000 0000 
+
+  0x00001526c5764824: ;   {runtime_call}
+  0x00001526c5764824: 0000 e9fb 
+
+  0x00001526c5764828: ;   {static_stub}
+  0x00001526c5764828: ffff ff48 | bb00 0000 | 0000 0000 
+
+  0x00001526c5764834: ;   {runtime_call}
+  0x00001526c5764834: 00e9 fbff 
+
+  0x00001526c5764838: ;   {static_stub}
+  0x00001526c5764838: ffff 48bb | 0000 0000 | 0000 0000 
+
+  0x00001526c5764844: ;   {runtime_call}
+  0x00001526c5764844: e9fb ffff 
+
+  0x00001526c5764848: ;   {static_stub}
+  0x00001526c5764848: ff48 bb00 | 0000 0000 
+
+  0x00001526c5764850: ;   {runtime_call}
+  0x00001526c5764850: 0000 00e9 | fbff ffff 
+
+  0x00001526c5764858: ;   {static_stub}
+  0x00001526c5764858: 48bb 0000 | 0000 0000 
+
+  0x00001526c5764860: ;   {runtime_call}
+  0x00001526c5764860: 0000 e9fb 
+
+  0x00001526c5764864: ;   {static_stub}
+  0x00001526c5764864: ffff ff48 | bb00 0000 | 0000 0000 
+
+  0x00001526c5764870: ;   {runtime_call}
+  0x00001526c5764870: 00e9 fbff 
+
+  0x00001526c5764874: ;   {static_stub}
+  0x00001526c5764874: ffff 48bb | 0000 0000 | 0000 0000 
+
+  0x00001526c5764880: ;   {runtime_call}
+  0x00001526c5764880: e9fb ffff 
+
+  0x00001526c5764884: ;   {static_stub}
+  0x00001526c5764884: ff48 bb00 | 0000 0000 
+
+  0x00001526c576488c: ;   {runtime_call}
+  0x00001526c576488c: 0000 00e9 | fbff ffff 
+
+  0x00001526c5764894: ;   {static_stub}
+  0x00001526c5764894: 48bb 0000 | 0000 0000 
+
+  0x00001526c576489c: ;   {runtime_call}
+  0x00001526c576489c: 0000 e9fb 
+
+  0x00001526c57648a0: ;   {static_stub}
+  0x00001526c57648a0: ffff ff48 | bb00 0000 | 0000 0000 
+
+  0x00001526c57648ac: ;   {runtime_call}
+  0x00001526c57648ac: 00e9 fbff 
+
+  0x00001526c57648b0: ;   {static_stub}
+  0x00001526c57648b0: ffff 48bb | 0000 0000 | 0000 0000 
+
+  0x00001526c57648bc: ;   {runtime_call}
+  0x00001526c57648bc: e9fb ffff 
+
+  0x00001526c57648c0: ;   {static_stub}
+  0x00001526c57648c0: ff48 bb00 | 0000 0000 
+
+  0x00001526c57648c8: ;   {runtime_call}
+  0x00001526c57648c8: 0000 00e9 | fbff ffff 
+[Exception Handler]
+  0x00001526c57648d0: ;   {runtime_call ExceptionBlob}
+  0x00001526c57648d0: e9ab 8244 | ffe8 0000 | 0000 4883 
+
+  0x00001526c57648dc: ;   {runtime_call DeoptimizationBlob}
+  0x00001526c57648dc: 2c24 05e9 | bc90 3aff | f4f4 f4f4 
+[/MachCode]
+
+
+Compiled method (c2) 3604889 8881       4       org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods (25 bytes)
+ total in heap  [0x00001526c557f710,0x00001526c5585940] = 25136
+ relocation     [0x00001526c557f870,0x00001526c557fb28] = 696
+ constants      [0x00001526c557fb40,0x00001526c557fb60] = 32
+ main code      [0x00001526c557fb60,0x00001526c5583420] = 14528
+ stub code      [0x00001526c5583420,0x00001526c55834a0] = 128
+ oops           [0x00001526c55834a0,0x00001526c55834f0] = 80
+ metadata       [0x00001526c55834f0,0x00001526c55837d8] = 744
+ scopes data    [0x00001526c55837d8,0x00001526c5584b78] = 5024
+ scopes pcs     [0x00001526c5584b78,0x00001526c5585488] = 2320
+ dependencies   [0x00001526c5585488,0x00001526c55854d0] = 72
+ handler table  [0x00001526c55854d0,0x00001526c55857a0] = 720
+ nul chk table  [0x00001526c55857a0,0x00001526c5585940] = 416
+
+
+[Constant Pool]
+             Address          hex4                    hex8      
+  0x00001526c557fb40:   0x00000000      0xfff0000000000000      
+  0x00001526c557fb44:   0xfff00000                              
+  0x00001526c557fb48:   0xf4f4f4f4      0xf4f4f4f4f4f4f4f4      
+  0x00001526c557fb4c:   0xf4f4f4f4                              
+  0x00001526c557fb50:   0xf4f4f4f4      0xf4f4f4f4f4f4f4f4      
+  0x00001526c557fb54:   0xf4f4f4f4                              
+  0x00001526c557fb58:   0xf4f4f4f4      0xf4f4f4f4f4f4f4f4      
+  0x00001526c557fb5c:   0xf4f4f4f4                              
+
+[MachCode]
+[Entry Point]
+  # {method} {0x0000152664c1fda8} 'computeReadLikelihoods' '(Lorg/broadinstitute/hellbender/tools/walkers/haplotypecaller/AssemblyResultSet;Lorg/broadinstitute/hellbender/utils/genotyper/SampleList;Ljava/util/Map;Z)Lorg/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods;' in 'org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PairHMMLikelihoodCalculationEngine'
+  # this:     rsi:rsi   = 'org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PairHMMLikelihoodCalculationEngine'
+  # parm0:    rdx:rdx   = 'org/broadinstitute/hellbender/tools/walkers/haplotypecaller/AssemblyResultSet'
+  # parm1:    rcx:rcx   = 'org/broadinstitute/hellbender/utils/genotyper/SampleList'
+  # parm2:    r8:r8     = 'java/util/Map'
+  # parm3:    r9        = boolean
+  #           [sp+0x80]  (sp of caller)
+  0x00001526c557fb60: ;   {no_reloc}
+  0x00001526c557fb60: 448b 5608 | 49bb 0000 | 001f 2615 | 0000 4d03 | d349 3bc2 
+
+  0x00001526c557fb74: ;   {runtime_call ic_miss_stub}
+  0x00001526c557fb74: 0f85 0682 | 58ff 6690 | 0f1f 4000 
+[Verified Entry Point]
+  0x00001526c557fb80: 8984 2400 | c0fe ff55 | 4883 ec70 | 4489 4c24 | 184c 8944 | 2410 4889 | 4c24 0848 | 8974 2420 
+  0x00001526c557fba0: ; implicit exception: dispatches to 0x00001526c558333c
+  0x00001526c557fba0: 8b6a 1445 | 8b5c ec08 
+
+  0x00001526c557fba8: ;   {metadata('java/util/LinkedHashSet')}
+  0x00001526c557fba8: 4181 fb48 | 880e 000f | 8503 2a00 | 004d 8d04 | ec41 8b68 | 0c45 8b54 | ec14 4489 | 1424 4181 
+  0x00001526c557fbc8: fa00 0004 | 000f 87dd | 2900 0049 | 63ca 4181 | fa00 0004 | 000f 8715 | 2300 004d | 8b8f 0801 
+  0x00001526c557fbe8: 0000 48c1 | e102 4883 | c117 4c8b | d149 83e2 | f84d 8bd9 | 4d03 da4d | 3b9f 1801 | 0000 0f83 
+  0x00001526c557fc08: ec22 0000 | 4d89 9f08 | 0100 0049 | 8bf9 4883 | c710 49c7 | 0101 0000 | 0041 0f18 | 83c0 0000 
+  0x00001526c557fc28: ;   {metadata('org/broadinstitute/hellbender/utils/haplotype/Haplotype'[])}
+  0x00001526c557fc28: 0041 c741 | 08b8 7961 | 0144 8b04 | 2445 8941 | 0c41 0f18 | 8300 0100 | 0041 0f18 | 8340 0100 
+  0x00001526c557fc48: 0041 0f18 | 8380 0100 | 0048 c1e9 | 0348 83c1 | fe48 33c0 | 4883 f908 | 7f10 48ff | c978 4f48 
+  0x00001526c557fc68: 8904 cf48 | ffc9 7df7 | eb44 c5fd | efc0 e90d | 0000 00c5 | fe7f 07c5 | fe7f 4720 | 4883 c740 
+  0x00001526c557fc88: 4883 e908 | 7ded 4883 | c104 7c0c | c5fe 7f07 | 4883 c720 | 4883 e904 | 4883 c104 | 7e10 48ff 
+  0x00001526c557fca8: c9c5 f9d6 | 0748 83c7 | 0848 ffc9 | 7df3 4c89 | 4c24 3045 | 8b54 ec08 
+
+  0x00001526c557fcc0: ;   {metadata('java/util/LinkedHashMap')}
+  0x00001526c557fcc0: 4181 fa78 | fc0a 000f | 85f7 2800 | 004d 8d14 | ec45 8b42 | 3045 85c0 | 0f84 1801 | 0000 448b 
+  0x00001526c557fce0: 1424 458b | da49 c1e0 
+
+  0x00001526c557fce8: ;   {metadata('org/broadinstitute/hellbender/utils/haplotype/Haplotype')}
+  0x00001526c557fce8: 0348 bb68 | bd29 2026 | 1500 0045 | 33d2 41b9 | 0100 0000 | eb71 4c8b | 4424 2045 | 8b58 3c45 
+  0x00001526c557fd08: 8b50 2c47 | 8b4c d408 
+
+  0x00001526c557fd10: ;   {metadata('org/broadinstitute/hellbender/utils/pairhmm/VectorLoglessPairHMM')}
+  0x00001526c557fd10: 4181 f938 | bb2c 010f | 854f 2600 | 004d 8bc3 | 49c1 e003 | 4b8d 34d4 | 488b 5424 
+
+  0x00001526c557fd2c: ;   {optimized virtual_call}
+  0x00001526c557fd2c: 2866 90e8 
+
+  0x00001526c557fd30: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [32]=Oop }
+                      ;*invokevirtual computeLog10Likelihoods {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@128 (line 272)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c557fd30: 8ceb 1d00 | 448b 5424 | 1441 ffc2 | 443b 5424 | 100f 8d81 | 1200 004c | 8b5c 2418 | 418b 5b30 
+  0x00001526c557fd50: 448b 4424 | 108b cde9 | 4a0e 0000 | 0f1f 4000 | 4d8d 04fc | 418b f9ff | c745 8bd1 | 448b cf41 
+  0x00001526c557fd70: 8b68 1045 | 3bd3 0f83 | 0028 0000 
+
+  0x00001526c557fd7c: ; implicit exception: dispatches to 0x00001526c55831f4
+  0x00001526c557fd7c: 418b 7cec | 0848 b900 | 0000 1f26 | 1500 0048 | 03cf 488b | 4940 483b | cb0f 8505 | 2800 0048 
+  0x00001526c557fd9c: 8b4c 2430 | 4e8d 6c91 | 1041 807f | 3800 0f85 | 8a17 0000 | 4189 6d00 | 4d8d 14ec | 498b cd4c 
+  0x00001526c557fdbc: 33d1 49c1 | ea18 4d85 | d274 1a48 | c1e9 0948 | bf00 00f8 | b526 1500 | 0048 03f9 | 803f 040f 
+  0x00001526c557fddc: 858f 1700 | 0049 8b8f | 5003 0000 
+
+  0x00001526c557fde8: ; ImmutableOopMap {rdi=NarrowOop [8]=Oop [16]=Oop [32]=Oop [48]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.LinkedHashMap::keysToArray@33 (line 544)
+                      ; - java.util.HashSet::toArray@12 (line 373)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.AssemblyResultSet::getHaplotypeList@16 (line 430)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@8 (line 175)
+  0x00001526c557fde8: 418b 7820 
+
+  0x00001526c557fdec: ;   {poll}
+  0x00001526c557fdec: 8501 85ff | 0f85 6aff | ffff 498b | 8708 0100 | 004c 8bd0 | 4983 c218 | 4d3b 9718 | 0100 000f 
+  0x00001526c557fe0c: 8307 2100 | 004d 8997 | 0801 0000 | 410f 1882 | c000 0000 | 48c7 0001 
+
+  0x00001526c557fe24: ;   {metadata('java/util/Arrays$ArrayList')}
+  0x00001526c557fe24: 0000 00c7 | 4008 2088 | 1d00 4489 | 600c 4c89 | 6010 4c8b | c04c 8b54 | 2430 4d8b | da49 c1eb 
+  0x00001526c557fe44: 0344 8958 | 104c 8b54 | 2408 4d85 | d20f 8465 | 2c00 004c | 8b5c 2410 
+
+  0x00001526c557fe5c: ; implicit exception: dispatches to 0x00001526c5583358
+  0x00001526c557fe5c: 418b 6b08 | 498b 8708 | 0100 004c | 8bc8 4983 | c110 4d3b | 8f18 0100 | 000f 83b6 | 2000 004d 
+  0x00001526c557fe7c: 898f 0801 | 0000 410f | 1881 c000 | 0000 48c7 | 0001 0000 
+
+  0x00001526c557fe90: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c557fe90: 00c7 4008 | a05e 2c01 | 4489 600c | 488b c849 | 8b87 0801 | 0000 4c8b | c849 83c1 | 184d 3b8f 
+  0x00001526c557feb0: 1801 0000 | 0f83 a920 | 0000 4d89 | 8f08 0100 | 0041 0f18 | 81c0 0000 | 0048 c700 | 0100 0000 
+  0x00001526c557fed0: ;   {metadata('org/broadinstitute/hellbender/utils/collections/IndexedSet')}
+  0x00001526c557fed0: c740 0800 | f32a 0144 | 8960 0c4c | 8960 104c | 8954 2410 | 4c89 5c24 | 184c 8944 | 2428 4889 
+  0x00001526c557fef0: 4c24 3048 | 8904 2448 | 8bf0 488b 
+
+  0x00001526c557fefc: ;   {optimized virtual_call}
+  0x00001526c557fefc: 5424 28e8 
+
+  0x00001526c557ff00: ; ImmutableOopMap {[0]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop }
+                      ;*invokespecial <init> {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::<init>@10 (line 57)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@27 (line 189)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c557ff00: 3c41 4000 | 4180 7f38 | 000f 85bb | 1600 004c | 8b54 2430 | 4d8b da4c | 8b04 244d | 8bd0 49c1 
+  0x00001526c557ff20: ea03 4c8b | 4c24 3045 | 8951 0c4d | 8bd0 4d33 | d349 c1ea | 184d 85d2 | 741a 49c1 | eb09 48bf 
+  0x00001526c557ff40: 0000 f8b5 | 2615 0000 | 4903 fb80 | 3f04 0f85 | 601a 0000 
+
+  0x00001526c557ff54: ;   {metadata('java/util/HashMap')}
+  0x00001526c557ff54: 81fd 70f8 | 0a00 0f85 | 7826 0000 | 4c8b 5424 | 184c 8954 | 2438 458b | 5a28 4585 | db0f 85b9 
+  0x00001526c557ff74: 1300 0049 | 8b9f 0801 | 0000 4c8b | d349 83c2 | 104d 3b97 | 1801 0000 | 0f83 9721 | 0000 4d89 
+  0x00001526c557ff94: 9708 0100 | 0041 0f18 | 82c0 0000 | 0048 c703 | 0100 0000 
+
+  0x00001526c557ffa8: ;   {metadata('java/util/HashMap$EntrySet')}
+  0x00001526c557ffa8: c743 08b8 | 7d11 004c | 8b54 2438 | 4d8b da49 | c1eb 0344 | 895b 0c41 | 807f 3800 | 0f85 021e 
+  0x00001526c557ffc8: 0000 488b | eb4c 8b54 | 2438 4c8b | c34d 33c2 | 4c8b db49 | c1eb 034c | 8b4c 2438 | 4589 5928 
+  0x00001526c557ffe8: 49c1 e818 | 4d85 c074 | 1a49 c1ea | 0948 bf00 | 00f8 b526 | 1500 0049 | 03fa 803f | 040f 85f8 
+  0x00001526c5580008: 1d00 0044 
+
+  0x00001526c558000c: ;   {metadata('java/util/HashMap$EntrySet')}
+  0x00001526c558000c: 8b55 0841 | 81fa b87d | 1100 0f85 | e025 0000 | 498b 8708 | 0100 004c | 8bd0 4983 | c228 4d3b 
+  0x00001526c558002c: 9718 0100 | 000f 8356 | 1f00 004d | 8997 0801 | 0000 410f | 1882 c000 | 0000 48c7 | 0001 0000 
+  0x00001526c558004c: ;   {metadata('java/util/HashMap$EntrySpliterator')}
+  0x00001526c558004c: 00c7 4008 | 4069 5501 | 4489 600c | 4c89 6018 | 4c89 6020 | 448b 550c | 41bb ffff | ffff 4c89 
+  0x00001526c558006c: 5810 4c8b | d84c 895c | 2440 4489 | 501c 498b | af08 0100 | 004c 8bd5 | 4983 c238 | 4d3b 9718 
+  0x00001526c558008c: 0100 000f | 8329 1f00 | 004d 8997 | 0801 0000 | 410f 1882 | c000 0000 | 48c7 4500 | 0100 0000 
+  0x00001526c55800ac: ;   {metadata('java/util/stream/ReferencePipeline$Head')}
+  0x00001526c55800ac: c745 0828 | 900f 0044 | 8965 0c4c | 8965 104c | 8965 184c | 8965 204c | 8965 284c | 8965 3048 
+  0x00001526c55800cc: 8b74 2440 | 4c8b 5424 | 204c 8914 | 2448 b840 | 6955 2026 
+
+  0x00001526c55800e0: ;   {virtual_call}
+  0x00001526c55800e0: 1500 00e8 
+
+  0x00001526c55800e4: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface characteristics {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.stream.StreamOpFlag::fromCharacteristics@1 (line 750)
+                      ; - java.util.stream.StreamSupport::stream@11 (line 70)
+                      ; - java.util.Collection::stream@7 (line 743)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@6 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55800e4: b8d7 4600 | 8bd8 f7c0 | 0400 0000 | 0f85 4312 | 0000 83e3 | 5541 807f | 3800 0f85 | 0215 0000 
+  0x00001526c5580104: 4180 7f38 | 000f 852e | 1500 004c | 8bed 4489 | 6520 458b | 5508 4489 | 5424 044c | 8b54 2440 
+  0x00001526c5580124: 49c1 ea03 | 4489 5528 | 4c8b 5424 | 4083 e355 | 4c8b dd4d | 33d3 8bcb | d1e1 49c1 | ea18 4c8b 
+  0x00001526c5580144: c549 c1e8 | 0344 8944 | 2440 41b9 | ff00 0000 | c442 70f2 | f14d 85d2 | 741a 49c1 | eb09 48bf 
+  0x00001526c5580164: 0000 f8b5 | 2615 0000 | 4903 fb80 | 3f04 0f85 | 8218 0000 | 4180 7f38 | 000f 85f1 | 1400 0044 
+  0x00001526c5580184: 8b54 2440 | 4489 551c | 4489 7514 | 895d 0c44 | 8865 1a44 | 8965 1044 | 8b5c 2404 
+
+  0x00001526c55801a0: ;   {metadata('java/util/stream/ReferencePipeline$Head')}
+  0x00001526c55801a0: 4181 fb28 | 900f 000f | 856f 2400 | 004d 8bb7 | 0801 0000 | 4d8b d649 | 83c2 404d | 3b97 1801 
+  0x00001526c55801c0: 0000 0f83 | 141e 0000 | 4d89 9708 | 0100 0041 | 0f18 82c0 | 0000 0049 | c706 0100 
+
+  0x00001526c55801dc: ;   {metadata('java/util/stream/ReferencePipeline$7')}
+  0x00001526c55801dc: 0000 41c7 | 4608 7828 | 2a00 4589 | 660c 4d89 | 6610 4d89 | 6618 4d89 | 6620 4d89 | 6628 4589 
+  0x00001526c55801fc: 6630 4d89 
+
+  0x00001526c5580200: ;   {oop(a 'org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PairHMMLikelihoodCalculationEngine$$Lambda$489+0x000015262061be90'{0x0000000144251ec8})}
+  0x00001526c5580200: 6638 41c7 | 4634 d9a3 | 8428 410f | b66d 184d | 8bdd 49c1 | eb03 4489 | 5c24 4045 | 895e 3885 
+  0x00001526c5580220: ed0f 85a9 | 2800 0041 | 807f 3800 | 0f85 7914 | 0000 498b | de41 c645 | 1801 448b | 5308 4489 
+  0x00001526c5580240: 5424 444d | 8bde 49c1 | eb03 4589 | 5d24 4d8b | d54d 8bde | 4d33 da49 | c1eb 18bd | 30ff ffff 
+  0x00001526c5580260: 4d85 db74 | 1a49 c1ea | 0948 bf00 | 00f8 b526 | 1500 0049 | 03fa 803f | 040f 85d7 | 1700 0041 
+  0x00001526c5580280: 807f 3800 | 0f85 5814 | 0000 448b | 5c24 4045 | 895e 204d | 8bd5 4d8b | de4d 33d3 | 49c1 ea18 
+  0x00001526c55802a0: 4d85 d274 | 1a49 c1eb | 0948 bf00 | 00f8 b526 | 1500 0049 | 03fb 803f | 040f 85f5 | 1700 0041 
+  0x00001526c55802c0: 807f 3800 | 0f85 4f14 | 0000 4123 | 6d14 458b | 451c 4589 | 461c 41c7 | 460c 8a00 | 0000 81cd 
+  0x00001526c55802e0: 8a00 0000 | 4189 6e14 | 4d8b d64d | 8bd8 49c1 | e303 4d33 | da49 c1eb | 184d 85db | 741f 4585 
+  0x00001526c5580300: c074 1a49 | c1ea 0948 | bf00 00f8 | b526 1500 | 0049 03fa | 803f 040f | 85c7 1900 | 0045 8b55 
+  0x00001526c5580320: 1041 ffc2 | 4589 5610 | 448b 5424 
+
+  0x00001526c558032c: ;   {metadata('java/util/stream/ReferencePipeline$7')}
+  0x00001526c558032c: 4441 81fa | 7828 2a00 | 0f85 1e23 | 0000 4d8b | b708 0100 | 004d 8bd6 | 4983 c240 | 4d3b 9718 
+  0x00001526c558034c: 0100 000f | 83bd 1c00 | 004d 8997 | 0801 0000 | 410f 1882 | c000 0000 | 49c7 0601 
+
+  0x00001526c5580368: ;   {metadata('java/util/stream/ReferencePipeline$4')}
+  0x00001526c5580368: 0000 0041 | c746 0850 | 9f54 0145 | 8966 0c4d | 8966 104d | 8966 184d | 8966 204d | 8966 2845 
+  0x00001526c5580388: 8966 304d 
+
+  0x00001526c558038c: ;   {oop(a 'org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PairHMMLikelihoodCalculationEngine$$Lambda$490+0x000015262061c0d0'{0x0000000144251e98})}
+  0x00001526c558038c: 8966 3841 | c746 34d3 | a384 280f | b66b 184c | 8beb 49c1 | ed03 4589 | 6e38 85ed | 0f85 5627 
+  0x00001526c55803ac: 0000 4180 | 7f38 000f | 8597 1300 | 0049 8bee | c643 1801 | 448b 5d08 | 4489 5c24 | 404d 8bde 
+  0x00001526c55803cc: 49c1 eb03 | 4489 5b24 | 4c8b d34d | 8bde 4d33 | da49 c1eb | 184d 85db | 741a 49c1 | ea09 48bf 
+  0x00001526c55803ec: 0000 f8b5 | 2615 0000 | 4903 fa80 | 3f04 0f85 | 1217 0000 | 4180 7f38 | 000f 857c | 1300 0045 
+  0x00001526c558040c: 896e 204c | 8bd3 4d8b | de4d 33d3 | 49c1 ea18 | 4d85 d274 | 1a49 c1eb | 0948 bf00 | 00f8 b526 
+  0x00001526c558042c: 1500 0049 | 03fb 803f | 040f 852f | 1700 0041 | 807f 3800 | 0f85 7813 | 0000 41bb | f0ff ffff 
+  0x00001526c558044c: 4423 5b14 | 448b 4b1c | 4589 4e1c | 41c7 460c | 0a00 0000 | 4183 cb0a | 4589 5e14 | 4d8b d64d 
+  0x00001526c558046c: 8bd9 49c1 | e303 4d33 | da49 c1eb | 184d 85db | 741f 4585 | c974 1a49 | c1ea 0948 | bf00 00f8 
+  0x00001526c558048c: b526 1500 | 0049 03fa | 803f 040f | 8595 1800 | 0044 8b5b | 1041 ffc3 | 4589 5e10 | 448b 5c24 
+  0x00001526c55804ac: ;   {metadata('java/util/stream/ReferencePipeline$4')}
+  0x00001526c55804ac: 4041 81fb | 509f 5401 | 0f85 da21 | 0000 4c8b | c549 8b87 | 0801 0000 | 4c8b d049 | 83c2 184d 
+  0x00001526c55804cc: 3b97 1801 | 0000 0f83 | 6e1b 0000 | 4d89 9708 | 0100 0041 | 0f18 82c0 | 0000 0048 | c700 0100 
+  0x00001526c55804ec: ;   {metadata('java/util/stream/ReduceOps$7')}
+  0x00001526c55804ec: 0000 c740 | 0858 a654 | 0144 8960 
+
+  0x00001526c55804f8: ;   {oop(a 'java/util/stream/StreamShape'{0x000000014004c698})}
+  0x00001526c55804f8: 14c7 400c | d398 0028 
+
+  0x00001526c5580500: ;   {oop(a 'java/util/stream/IntPipeline$$Lambda$402+0x0000152620555828'{0x00000001440f71e8})}
+  0x00001526c5580500: c740 103d | ee81 2841 | 0fb6 6818 | 85ed 0f85 | 2426 0000 | 41c6 4018 | 0145 8b58 | 1c43 0fb6 
+  0x00001526c5580520: 6cdc 1a85 | ed0f 8541 | 2600 0048 | 8944 2440 | 4c89 0424 | 488b f048 | 8b6c 2420 | 9048 b858 
+  0x00001526c5580540: a654 2026 
+
+  0x00001526c5580544: ;   {virtual_call}
+  0x00001526c5580544: 1500 00e8 
+
+  0x00001526c5580548: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface getOpFlags {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.stream.AbstractPipeline::evaluate@80 (line 234)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5580548: d4fa cfff | 8bd8 4c8b | 0c24 418b | 691c 458b | 54ec 2845 | 85d2 0f84 | 3c26 0000 | 4180 7f38 
+  0x00001526c5580568: 000f 8586 | 1200 0045 | 8964 ec28 | 410f b66c | ec1a 85ed | 0f85 7a26 | 0000 85db | 7427 448b 
+  0x00001526c5580588: db41 d1eb | 448b c341 | 83e0 5541 | 83e3 5541 | d1e0 440b | c345 0bc3 | c442 38f2 | 5914 440b 
+  0x00001526c55805a8: db45 8959 | 1449 8bca | 48c1 e103 | 488b 7424 | 4049 8bd1 | 9048 b858 | a654 2026 
+
+  0x00001526c55805c4: ;   {virtual_call}
+  0x00001526c55805c4: 1500 00e8 
+
+  0x00001526c55805c8: ; ImmutableOopMap {[16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [56]=Oop }
+                      ;*invokeinterface evaluateSequential {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.stream.AbstractPipeline::evaluate@88 (line 234)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55805c8: d43f d3ff 
+
+  0x00001526c55805cc: ; implicit exception: dispatches to 0x00001526c5583260
+  0x00001526c55805cc: 448b 5008 
+
+  0x00001526c55805d0: ;   {metadata('java/util/OptionalInt')}
+  0x00001526c55805d0: 4181 fa60 | 7415 000f | 855b 2900 | 000f b668 | 1085 ed0f | 8453 2600 | 0044 8b40 | 0c4c 8b4c 
+  0x00001526c55805f0: 2428 458b 
+
+  0x00001526c55805f4: ;   {metadata('java/util/Arrays$ArrayList')}
+  0x00001526c55805f4: 5908 4181 | fb20 881d | 000f 85b1 | 2000 004c | 894c 2440 | 4d8b af08 | 0100 0041 | 8b69 104d 
+  0x00001526c5580614: 8bd5 4983 | c220 4d3b | 9718 0100 | 000f 8350 | 1a00 004d | 8997 0801 | 0000 410f | 1882 c000 
+  0x00001526c5580634: 0000 49c7 | 4500 0100 
+
+  0x00001526c558063c: ;   {metadata('java/util/Spliterators$ArraySpliterator')}
+  0x00001526c558063c: 0000 41c7 | 4508 d8a7 | 1000 4589 | 650c 4d89 | 6510 4d89 | 6518 458b | 74ec 0c49 | 8bdd 4189 
+  0x00001526c558065c: 6d18 4d8d | 14ec 4d8b | dd4d 33d3 | 49c1 ea18 | 4d85 d274 | 1a49 c1eb | 0948 bf00 | 00f8 b526 
+  0x00001526c558067c: 1500 0049 | 03fb 803f | 040f 8533 | 1500 0045 | 8975 1041 | c745 1450 | 4000 0045 | 8965 0c4d 
+  0x00001526c558069c: 8b9f 0801 | 0000 4d8b | d349 83c2 | 384d 3b97 | 1801 0000 | 0f83 f019 | 0000 4d89 | 9708 0100 
+  0x00001526c55806bc: 0041 0f18 | 82c0 0000 | 0049 c703 | 0100 0000 
+
+  0x00001526c55806cc: ;   {metadata('java/util/stream/ReferencePipeline$Head')}
+  0x00001526c55806cc: 41c7 4308 | 2890 0f00 | 4589 630c | 4d89 6310 | 4d89 6318 | 4d89 6320 | 4d89 6328 | 4d89 6330 
+  0x00001526c55806ec: 4489 4424 | 2848 891c | 244c 895c | 2448 488b | 3424 4c8b | 5424 204c | 8954 2408 | 498b eb66 
+  0x00001526c558070c: 9048 b8d8 | a710 1f26 
+
+  0x00001526c5580714: ;   {virtual_call}
+  0x00001526c5580714: 1500 00e8 
+
+  0x00001526c5580718: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [64]=Oop [72]=Oop }
+                      ;*invokeinterface characteristics {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.stream.StreamOpFlag::fromCharacteristics@1 (line 750)
+                      ; - java.util.stream.StreamSupport::stream@11 (line 70)
+                      ; - java.util.Collection::stream@7 (line 743)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@42 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5580718: 0405 d0ff | 448b f0f7 | c004 0000 | 000f 8556 | 0c00 0048 | 8b2c 2441 | 83e6 5541 | 807f 3800 
+  0x00001526c5580738: 0f85 ef10 | 0000 4c8b | 6c24 4841 | 807f 3800 | 0f85 1b11 | 0000 498b | dd45 8965 | 2044 8b53 
+  0x00001526c5580758: 0844 8954 | 2408 4d8b | dd49 c1eb | 0344 895c | 240c 4c8b | dd49 c1eb | 0345 895d | 2841 83e6 
+  0x00001526c5580778: 554c 8bd5 | 458b de41 | d1e3 41b9 | ff00 0000 | c4c2 20f2 | e94d 8bdd | 4d33 d349 | c1ea 184d 
+  0x00001526c5580798: 85d2 741a | 49c1 eb09 | 48bf 0000 | f8b5 2615 | 0000 4903 | fb80 3f04 | 0f85 5414 | 0000 4180 
+  0x00001526c55807b8: 7f38 000f | 85df 1000 | 0044 8b54 | 240c 4589 | 551c 4189 | 6d14 4589 | 750c 4588 | 651a 4589 
+  0x00001526c55807d8: 6510 448b 
+
+  0x00001526c55807dc: ;   {metadata('java/util/stream/ReferencePipeline$Head')}
+  0x00001526c55807dc: 5c24 0841 | 81fb 2890 | 0f00 0f85 | 0c1f 0000 | 4d8b b708 | 0100 004d | 8bd6 4983 | c240 4d3b 
+  0x00001526c55807fc: 9718 0100 | 000f 83c5 | 1800 004d | 8997 0801 | 0000 410f | 1882 c000 | 0000 49c7 | 0601 0000 
+  0x00001526c558081c: ;   {metadata('java/util/stream/ReferencePipeline$4')}
+  0x00001526c558081c: 0041 c746 | 0850 9f54 | 0145 8966 | 0c4d 8966 | 104d 8966 | 184d 8966 | 204d 8966 | 2845 8966 
+  0x00001526c558083c: 304d 8966 
+
+  0x00001526c5580840: ;   {oop(a 'org/broadinstitute/hellbender/tools/walkers/haplotypecaller/PairHMMLikelihoodCalculationEngine$$Lambda$491+0x000015262061c2f0'{0x0000000144251640})}
+  0x00001526c5580840: 3841 c746 | 34c8 a284 | 280f b66b | 184c 8beb | 49c1 ed03 | 4589 6e38 | 85ed 0f85 | 0c24 0000 
+  0x00001526c5580860: 4180 7f38 | 000f 856c | 1000 0049 | 8bee c643 | 1801 448b | 5508 4489 | 1424 4d8b | d649 c1ea 
+  0x00001526c5580880: 0344 8953 | 244d 8bd6 | 4c8b db4d | 33d3 49c1 | ea18 4d85 | d274 1a49 | c1eb 0948 | bf00 00f8 
+  0x00001526c55808a0: b526 1500 | 0049 03fb | 803f 040f | 85ed 1300 | 0041 807f | 3800 0f85 | 5210 0000 | 4589 6e20 
+  0x00001526c55808c0: 4c8b d34d | 8bde 4d33 | d349 c1ea | 184d 85d2 | 741a 49c1 | eb09 48bf | 0000 f8b5 | 2615 0000 
+  0x00001526c55808e0: 4903 fb80 | 3f04 0f85 | 6c13 0000 | 4180 7f38 | 000f 854e | 1000 0041 | bbf0 ffff | ff44 235b 
+  0x00001526c5580900: 1444 8b53 | 1c45 8956 | 1c41 c746 | 0c0a 0000 | 0041 83cb | 0a45 895e | 144d 8bde | 4d8b c249 
+  0x00001526c5580920: c1e0 034d | 33c3 49c1 | e818 4d85 | c074 1f45 | 85d2 741a | 49c1 eb09 | 48bf 0000 | f8b5 2615 
+  0x00001526c5580940: 0000 4903 | fb80 3f04 | 0f85 3814 | 0000 448b | 5310 41ff | c245 8956 | 1044 8b14 
+
+  0x00001526c558095c: ;   {metadata('java/util/stream/ReferencePipeline$4')}
+  0x00001526c558095c: 2441 81fa | 509f 5401 | 0f85 ca1d | 0000 4889 | 6c24 5049 | 8b87 0801 | 0000 4c8b | d049 83c2 
+  0x00001526c558097c: 184d 3b97 | 1801 0000 | 0f83 6917 | 0000 4d89 | 9708 0100 | 0041 0f18 | 82c0 0000 | 0048 c700 
+  0x00001526c558099c: 0100 0000 
+
+  0x00001526c55809a0: ;   {metadata('java/util/stream/ReduceOps$7')}
+  0x00001526c55809a0: c740 0858 | a654 0144 
+
+  0x00001526c55809a8: ;   {oop(a 'java/util/stream/StreamShape'{0x000000014004c698})}
+  0x00001526c55809a8: 8960 14c7 | 400c d398 
+
+  0x00001526c55809b0: ;   {oop(a 'java/util/stream/IntPipeline$$Lambda$402+0x0000152620555828'{0x00000001440f71e8})}
+  0x00001526c55809b0: 0028 c740 | 103d ee81 | 2848 8944 | 2448 4c8b | 5424 5041 | 0fb6 6a18 | 85ed 0f85 | d022 0000 
+  0x00001526c55809d0: 41c6 4218 | 0145 8b52 | 1c43 0fb6 | 6cd4 1a85 | ed0f 85e1 | 2200 0048 | 8bf0 6666 | 9048 b858 
+  0x00001526c55809f0: a654 2026 
+
+  0x00001526c55809f4: ;   {virtual_call}
+  0x00001526c55809f4: 1500 00e8 
+
+  0x00001526c55809f8: ; ImmutableOopMap {[16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [64]=Oop [72]=Oop [80]=Oop }
+                      ;*invokeinterface getOpFlags {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.stream.AbstractPipeline::evaluate@80 (line 234)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55809f8: 24f6 cfff | 8bd8 4c8b | 5424 5041 | 8b6a 1c45 | 8b6c ec28 | 4585 ed0f | 84db 2200 | 0041 807f 
+  0x00001526c5580a18: 3800 0f85 | 5c0f 0000 | 4589 64ec | 2841 0fb6 | 6cec 1a85 | ed0f 851d | 2300 0085 | db74 3144 
+  0x00001526c5580a38: 8bd3 41d1 | ea44 8bdb | 4183 e355 | 4183 e255 | 41d1 e344 | 0bdb 450b | da4c 8b54 | 2450 c442 
+  0x00001526c5580a58: 20f2 5214 | 440b d34c | 8b5c 2450 | 4589 5314 | 498b cd48 | c1e1 0348 | 8b74 2448 | 488b 5424 
+  0x00001526c5580a78: 5048 b858 | a654 2026 
+
+  0x00001526c5580a80: ;   {virtual_call}
+  0x00001526c5580a80: 1500 00e8 
+
+  0x00001526c5580a84: ; ImmutableOopMap {[16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface evaluateSequential {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.stream.AbstractPipeline::evaluate@88 (line 234)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5580a84: 183b d3ff 
+
+  0x00001526c5580a88: ; implicit exception: dispatches to 0x00001526c55832a8
+  0x00001526c5580a88: 448b 5008 
+
+  0x00001526c5580a8c: ;   {metadata('java/util/OptionalInt')}
+  0x00001526c5580a8c: 4181 fa60 | 7415 000f | 85db 2400 | 000f b668 | 1085 ed0f | 84e7 2200 | 0044 8b48 | 0c4c 8b54 
+  0x00001526c5580aac: 2420 418b | 6a2c 458b 
+
+  0x00001526c5580ab4: ;   {metadata('org/broadinstitute/hellbender/utils/pairhmm/VectorLoglessPairHMM')}
+  0x00001526c5580ab4: 5cec 0841 | 81fb 38bb | 2c01 0f85 | 901c 0000 | 498d 34ec | 488b 5424 | 4048 8b4c | 2438 448b 
+  0x00001526c5580ad4: ;   {optimized virtual_call}
+  0x00001526c5580ad4: 4424 28e8 
+
+  0x00001526c5580ad8: ; ImmutableOopMap {[16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop }
+                      ;*invokevirtual initialize {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@77 (line 257)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5580ad8: 446f 4100 | 498b 8708 | 0100 004c | 8bd0 4983 | c240 4d3b | 9718 0100 | 000f 8316 | 1600 004d 
+  0x00001526c5580af8: 8997 0801 | 0000 410f | 1882 c000 | 0000 48c7 | 0001 0000 
+
+  0x00001526c5580b0c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods')}
+  0x00001526c5580b0c: 00c7 4008 | c042 2c01 | 4489 600c | 4c89 6010 | 4c89 6018 | 4c89 6020 | 4c89 6028 | 4c89 6030 
+  0x00001526c5580b2c: 4c89 6038 | 4889 4424 | 1848 8bf0 | 488b 5424 | 1048 8b4c | 2430 4c8b 
+
+  0x00001526c5580b44: ;   {optimized virtual_call}
+  0x00001526c5580b44: 4424 38e8 
+
+  0x00001526c5580b48: ; ImmutableOopMap {[24]=Oop [32]=Oop }
+                      ;*invokespecial <init> {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@48 (line 194)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5580b48: d496 4a00 | 4c8b 5424 | 1841 8b5a | 3045 8b54 
+
+  0x00001526c5580b58: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedSampleList')}
+  0x00001526c5580b58: dc08 4181 | fa08 642c | 010f 8521 | 1c00 004d | 8d14 dc45 | 8b5a 0c43 | 8b6c dc0c 
+
+  0x00001526c5580b74: ; implicit exception: dispatches to 0x00001526c5583300
+  0x00001526c5580b74: 458b 54ec 
+
+  0x00001526c5580b78: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5580b78: 0841 81fa | 40e1 0000 | 0f85 161c | 0000 4d8d | 14ec 458b | 4210 4585 | c00f 8e31 | 0400 004c 
+  0x00001526c5580b98: 8b54 2418 | 498b ca48 | c1e9 0345 | 33d2 458b 
+
+  0x00001526c5580ba8: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedSampleList')}
+  0x00001526c5580ba8: 4cdc 0841 | 81f9 0864 | 2c01 0f85 | 6007 0000 | 4d8d 1cdc | 458b 5b0c 
+
+  0x00001526c5580bc0: ; implicit exception: dispatches to 0x00001526c55831dc
+  0x00001526c5580bc0: 478b 4cdc | 0c43 8b5c 
+
+  0x00001526c5580bc8: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5580bc8: cc08 81fb | 40e1 0000 | 0f85 8219 | 0000 4f8d | 1ccc 458b | 5b10 453b | d30f 8d46 | 1c00 004c 
+  0x00001526c5580be8: 8b5c 2418 | 418b 7b3c 
+
+  0x00001526c5580bf0: ; implicit exception: dispatches to 0x00001526c55830b4
+  0x00001526c5580bf0: 458b 5cfc | 0c45 3bd3 | 0f83 3116 | 0000 498d | 1cfc 4a8d | 6c93 1044 | 8b4d 0045 | 85c9 0f85 
+  0x00001526c5580c10: b407 0000 | 4d8b 9f08 | 0100 004d | 8bcb 4983 | c118 4d3b | 8f18 0100 | 000f 836b | 1200 004d 
+  0x00001526c5580c30: 898f 0801 | 0000 410f | 1881 c000 | 0000 49c7 | 0301 0000 
+
+  0x00001526c5580c44: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5580c44: 0041 c743 | 0818 612c | 014d 8963 | 1045 8953 | 0c41 894b | 1045 8b4c 
+
+  0x00001526c5580c5c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/LikelihoodMatrix'[])}
+  0x00001526c5580c5c: fc08 4181 | f990 d161 | 010f 853d | 1700 0041 | 807f 3800 | 0f85 3308 | 0000 498b | db4c 8bcd 
+  0x00001526c5580c7c: 498b fb48 | c1ef 0389 | 7d00 4d33 | d949 c1eb | 184d 85db | 741a 49c1 | e909 48bf | 0000 f8b5 
+  0x00001526c5580c9c: 2615 0000 | 4903 f980 | 3f04 0f85 | 3208 0000 | 448b 4b08 
+
+  0x00001526c5580cb0: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5580cb0: 4181 f918 | 612c 010f | 85f3 1500 | 004c 8bdb | 418b 7b10 | 418b 5b0c 
+
+  0x00001526c5580cc8: ; implicit exception: dispatches to 0x00001526c55830c4
+  0x00001526c5580cc8: 458b 4cfc | 1c43 8b7c 
+
+  0x00001526c5580cd0: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5580cd0: cc08 81ff | 40e1 0000 | 0f85 f615 | 0000 4b8d | 3ccc 448b | 4f10 4585 | c90f 8c11 | 1600 0041 
+  0x00001526c5580cf0: 3bd9 0f83 | 5c15 0000 | 8b7f 1441 | 8b54 fc0c | 3bda 0f83 | 7c15 0000 | 4d8d 0cfc | 418b 5c99 
+  0x00001526c5580d10: 1045 8b4c 
+
+  0x00001526c5580d14: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5580d14: dc08 4181 | f940 e100 | 000f 858d | 2200 0049 | 8b87 0801 | 0000 4c8b | c849 83c1 | 1849 8d2c 
+  0x00001526c5580d34: dc4d 3b8f | 1801 0000 | 0f83 0711 | 0000 4d89 | 8f08 0100 | 0041 0f18 | 81c0 0000 | 0048 c700 
+  0x00001526c5580d54: 0100 0000 
+
+  0x00001526c5580d58: ;   {metadata('java/util/Collections$UnmodifiableRandomAccessList')}
+  0x00001526c5580d58: c740 0820 | 8b1e 0044 | 8960 0c4c | 8960 1048 | 8bd0 488b | dd48 c1eb | 0389 580c | 8958 104c 
+  0x00001526c5580d78: 8bc8 488b | dd49 33d9 | 48c1 eb18 | 4885 db0f | 84a7 0600 | 0049 c1e9 | 0948 bf00 | 00f8 b526 
+  0x00001526c5580d98: 1500 0049 | 03f9 803f | 040f 8594 | 0600 008b | e94c 895c | 2428 4489 | 5424 1444 | 8944 2410 
+  0x00001526c5580db8: 488b 7424 
+
+  0x00001526c5580dbc: ;   {optimized virtual_call}
+  0x00001526c5580dbc: 2066 90e8 
+
+  0x00001526c5580dc0: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [32]=Oop [40]=Oop }
+                      ;*invokevirtual modifyReadQualities {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@7 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5580dc0: 1cbc 2500 
+
+  0x00001526c5580dc4: ; implicit exception: dispatches to 0x00001526c558310c
+  0x00001526c5580dc4: 448b 5808 
+
+  0x00001526c5580dc8: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5580dc8: 4181 fb40 | e100 000f | 855b 1500 | 0048 8bc8 | 8b59 1085 | db0f 8e1b | efff ff44 | 8bd3 4585 
+  0x00001526c5580de8: d20f 84e5 | 1500 004c | 63cb 4d63 | d24d 8bc1 | 49ff c84d | 3bc2 0f83 | d015 0000 | 448b 5114 
+  0x00001526c5580e08: ; implicit exception: dispatches to 0x00001526c55823d4
+  0x00001526c5580e08: 478b 5cd4 | 0c45 85db | 0f86 be15 | 0000 4d63 | db4d 3bc3 | 0f83 b215 
+
+  0x00001526c5580e20: ;   {oop(a 'java/lang/Class'{0x000000014044f710} = 'org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerGenotypingDebugger')}
+  0x00001526c5580e20: 0000 49bb | 10f7 4440 | 0100 0000 | 453b 6370 | 0f85 9e15 | 0000 478b | 44d4 1047 | 8b5c c408 
+  0x00001526c5580e40: ;   {metadata('org/broadinstitute/hellbender/utils/read/SAMRecordToGATKReadAdapter')}
+  0x00001526c5580e40: 4181 fb68 | 3a2e 010f | 85e0 2100 | 0049 83c1 | fd4b 8d34 | d449 81f9 | 0000 0080 | 49c7 c200 
+  0x00001526c5580e60: 0000 804d | 0f4c ca45 | 8bd9 4183 | fb01 0f8e | a015 0000 | 41b9 0100 | 0000 418b | fb41 2bf9 
+  0x00001526c5580e80: 4533 c045 | 3bd9 410f | 4cf8 81ff | a00f 0000 | 41ba a00f | 0000 410f | 47fa 4103 | f966 6690 
+  0x00001526c5580ea0: 468b 548e | 1047 8b44 
+
+  0x00001526c5580ea8: ;   {metadata('org/broadinstitute/hellbender/utils/read/SAMRecordToGATKReadAdapter')}
+  0x00001526c5580ea8: d408 4181 | f868 3a2e | 010f 856d | 2100 0046 | 8b54 8e14 | 418b d1ff | c247 8b44 
+
+  0x00001526c5580ec4: ;   {metadata('org/broadinstitute/hellbender/utils/read/SAMRecordToGATKReadAdapter')}
+  0x00001526c5580ec4: d408 4181 | f868 3a2e | 010f 854b | 2100 0046 | 8b44 8e18 | 418b d183 | c202 478b 
+
+  0x00001526c5580ee0: ;   {metadata('org/broadinstitute/hellbender/utils/read/SAMRecordToGATKReadAdapter')}
+  0x00001526c5580ee0: 54c4 0841 | 81fa 683a | 2e01 0f85 | 2821 0000 | 468b 448e | 1c41 8bd1 | 83c2 0347 | 8b54 c408 
+  0x00001526c5580f00: ;   {metadata('org/broadinstitute/hellbender/utils/read/SAMRecordToGATKReadAdapter')}
+  0x00001526c5580f00: 4181 fa68 | 3a2e 010f | 8505 2100 | 0041 83c1 | 0444 3bcf | 7c8a 4d8b | 9750 0300 
+
+  0x00001526c5580f1c: ; ImmutableOopMap {rcx=Oop rsi=Oop rbp=NarrowOop [24]=Oop [32]=Oop [40]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@115 (line 264)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+                      ;   {poll}
+  0x00001526c5580f1c: 0041 8502 | 453b cb0f | 8c51 ffff | ff44 3bcb | 0f8d cced | ffff 6690 | 468b 5c8e | 1047 8b54 
+  0x00001526c5580f3c: ;   {metadata('org/broadinstitute/hellbender/utils/read/SAMRecordToGATKReadAdapter')}
+  0x00001526c5580f3c: dc08 4181 | fa68 3a2e | 010f 85c1 | 2000 0041 | ffc1 443b | cb7c e1e9 | a6ed ffff | c5fb 1044 
+  0x00001526c5580f5c: 2410 448b | 5424 288b | 6c24 2c4d | 8b87 5003 | 0000 4c8b | 5c24 1845 | 8b5b 24ff 
+
+  0x00001526c5580f78: ; ImmutableOopMap {r11=NarrowOop [24]=Oop [32]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@131 (line 431)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+                      ;   {poll}
+  0x00001526c5580f78: c541 8500 
+
+  0x00001526c5580f7c: ; implicit exception: dispatches to 0x00001526c55831d0
+  0x00001526c5580f7c: 478b 4cdc | 0c41 3be9 | 0f8c e800 | 0000 4c8b | 5424 20c4 | c17b 1042 | 20c4 c17b | 104a 1841 
+  0x00001526c5580f9c: 0fb6 4a0d | 488b 7424 | 2048 8b54 
+
+  0x00001526c5580fa8: ;   {optimized virtual_call}
+  0x00001526c5580fa8: 2418 90e8 
+
+  0x00001526c5580fac: ; ImmutableOopMap {[24]=Oop }
+                      ;*invokevirtual filterPoorlyModeledEvidence {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@115 (line 201)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5580fac: 7043 4100 | 488b 4424 | 1848 83c4 
+
+  0x00001526c5580fb8: ;   {poll_return}
+  0x00001526c5580fb8: 705d 493b | a748 0300 | 000f 872b | 2400 00c3 | 4c8b 5424 | 20c4 c17b | 1042 1045 | 0fb6 520f 
+  0x00001526c5580fd8: c5f1 57c9 | c5f9 2ec8 | 0f86 8d1a | 0000 c5f9 | 2ec0 0f8a | cc1d 0000 | 0f85 c61d 
+
+  0x00001526c5580ff4: ;   {section_word}
+  0x00001526c5580ff4: 0000 c5f9 | 2e05 42eb | ffff 7a06 | 0f84 fe1d | 0000 4c8b | 5c24 1841 | 8b6b 3445 | 8b5c ec08 
+  0x00001526c5581014: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c5581014: 4181 fba0 | 5e2c 010f | 8587 1700 | 004d 8d1c | ec45 8b43 | 0c43 8b6c | c40c 458b 
+
+  0x00001526c5581030: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5581030: 5cec 0841 | 81fb 40e1 | 0000 0f85 | 9017 0000 | 4d8d 1cec | 418b 6b10 | 85ed 0f84 | 001e 0000 
+  0x00001526c5581050: 83fd 010f | 841f 1e00 | 004c 8b5c | 2418 458b | 5b24 478b | 4cdc 0c45 | 85c9 0f86 | 1aff ffff 
+  0x00001526c5581070: 33ed 478b | 4cdc 0c41 | 3be9 0f83 | 9f13 0000 | 4c8b 4424 | 1845 8b40 | 1c43 8b5c | c408 49c1 
+  0x00001526c5581090: e303 458b 
+
+  0x00001526c5581094: ;   {metadata('java/util/ArrayList')}
+  0x00001526c5581094: 4cab 1081 | fb40 e100 | 000f 8515 | 1400 004f | 8d1c c445 | 8b43 1045 | 85c0 0f8c | 3814 0000 
+  0x00001526c55810b4: 413b e80f | 838f 1300 | 0045 8b5b | 1443 8b4c | dc0c 3be9 | 0f83 b613 | 0000 49c1 | e303 458b 
+  0x00001526c55810d4: 5cab 1047 | 8b44 dc08 
+
+  0x00001526c55810dc: ;   {metadata('java/util/ArrayList')}
+  0x00001526c55810dc: 4181 f840 | e100 000f | 85ef 1e00 | 0049 c1e3 | 0345 8b43 | 1045 85c0 | 0f8e 6dfe | ffff 478b 
+  0x00001526c55810fc: 5ccc 0c45 | 85db 0f86 | 1c14 0000 | 4d63 db4b | 8d0c cc48 | 894c 2450 | 33f6 4489 | 4424 444c 
+  0x00001526c558111c: 895c 2448 | eb58 b901 | 0000 0041 | 3bca 7d31 | 4c8b 5c24 | 5041 8b7c | 8b10 458b | 44fc 0c48 
+  0x00001526c558113c: c1e7 0341 | 3bd8 0f83 | 8f02 0000 | c5f9 2e44 | df10 7606 | c5fb 1144 | df10 ffc1 | 413b ca7c 
+  0x00001526c558115c: cf8b f3ff | c63b 7424 | 440f 8ded | fdff ffc5 | fb10 4424 | 1044 8b54 | 2428 8b6c | 242c 8974 
+  0x00001526c558117c: 2434 4489 | 4c24 3089 | 6c24 2c44 | 8954 2428 | c5fb 1144 | 2410 488b | 7424 188b | d58b 4c24 
+  0x00001526c558119c: 3445 8bc2 | 4533 c98b 
+
+  0x00001526c55811a4: ;   {optimized virtual_call}
+  0x00001526c55811a4: e966 90e8 
+
+  0x00001526c55811a8: ; ImmutableOopMap {[24]=Oop [32]=Oop [48]=NarrowOop [80]=Oop }
+                      ;*invokevirtual searchBestAllele {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::searchBestAllele@5 (line 564)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoodsPerEvidence@7 (line 445)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@119 (line 435)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55811a8: 1448 2300 
+
+  0x00001526c55811ac: ; implicit exception: dispatches to 0x00001526c5583078
+  0x00001526c55811ac: c5fb 1040 | 104c 8b54 | 2418 458b | 4234 478b | 5cc4 08c5 | fb58 4424 
+
+  0x00001526c55811c4: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c55811c4: 1041 81fb | a05e 2c01 | 0f85 760f | 0000 4f8d | 14c4 458b | 520c 478b | 44d4 0c47 | 8b5c c408 
+  0x00001526c55811e4: ;   {metadata('java/util/ArrayList')}
+  0x00001526c55811e4: 4181 fb40 | e100 000f | 859f 0f00 | 004f 8d14 | c445 8b52 | 1045 85d2 | 0f8e 0a01 | 0000 4963 
+  0x00001526c5581204: ca48 ffc9 | 483b 4c24 | 480f 83c9 | 0f00 0044 | 8b4c 2430 | 478b 5ccc | 1047 8b44 | dc0c 4b8d 
+  0x00001526c5581224: 3cdc 8bdd | 413b d80f | 83f7 0f00 | 00c5 f92e | 44df 1076 | 06c5 fb11 | 44df 1048 | 81f9 0000 
+  0x00001526c5581244: 0080 49c7 | c300 0000 | 8049 0f4c | cb8b d183 | fa01 0f8e | c6fe ffff | b901 0000 | 00eb 1149 
+  0x00001526c5581264: 8bbf 5003 
+
+  0x00001526c5581268: ; ImmutableOopMap {r9=NarrowOop [24]=Oop [32]=Oop [80]=Oop }
+                      ;*goto {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoodsPerEvidence@67 (line 452)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@119 (line 435)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+                      ;   {poll}
+  0x00001526c5581268: 0000 8507 | 3bca 0f8d | b3fe ffff | 448b c244 | 2bc1 33ff | 3bd1 440f | 4cc7 4181 | f8d0 0700 
+  0x00001526c5581288: 0041 bbd0 | 0700 0045 | 0f47 c344 | 03c1 895c | 2434 eb12 | 0f1f 4000 | c5fb 1144 | df10 83c1 
+  0x00001526c55812a8: 0241 3bc8 | 7db5 4c8b | 5c24 5041 | 8b7c 8b10 
+
+  0x00001526c55812b8: ; implicit exception: dispatches to 0x00001526c5583068
+  0x00001526c55812b8: 458b 5cfc | 0c48 c1e7 | 038b 6c24 | 3441 3beb | 0f83 0501 | 0000 448b | 5c24 34c4 | a179 2e44 
+  0x00001526c55812d8: df10 7607 | c4a1 7b11 | 44df 104c | 8b5c 2450 | 458b 5c8b | 1443 8b5c | dc0c 4b8d | 3cdc 3beb 
+  0x00001526c55812f8: 0f83 d300 | 0000 8b5c | 2434 c5f9 | 2e44 df10 | 7796 eb9a | 448b 4c24 | 308b dde9 | 45fe ffff 
+  0x00001526c5581318: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/SampleList$4')}
+  0x00001526c5581318: 4181 f9a0 | 522c 010f | 8590 1b00 | 0041 bb01 | 0000 00e9 | aef8 ffff | 4b8d 2cdc | e9d2 ecff 
+  0x00001526c5581338: ff4c 8b54 | 2440 458b 
+
+  0x00001526c5581340: ;   {metadata('java/util/stream/Streams$RangeIntSpliterator')}
+  0x00001526c5581340: 5208 4181 | faa0 4754 | 010f 84a7 
+
+  0x00001526c558134c: ;   {metadata('java/util/TreeMap$KeySpliterator')}
+  0x00001526c558134c: edff ff41 | 81fa 189a | 5401 0f85 | 941b 0000 | 4c8b 5424 | 4045 8b5a | 1845 85db | 0f84 6a1b 
+  0x00001526c558136c: 0000 473b | 64dc 1c0f | 847d edff | ff83 e351 | e978 edff | ff48 8b2c | 2444 8b55 
+
+  0x00001526c5581388: ;   {metadata('java/util/stream/Streams$RangeIntSpliterator')}
+  0x00001526c5581388: 0841 81fa | a047 5401 | 0f84 99f3 
+
+  0x00001526c5581394: ;   {metadata('java/util/TreeMap$KeySpliterator')}
+  0x00001526c5581394: ffff 4181 | fa18 9a54 | 010f 8571 | 1b00 004c | 8b14 2445 | 8b5a 1845 | 85db 0f84 | 301b 0000 
+  0x00001526c55813b4: 473b 64dc | 1c0f 8470 | f3ff ff41 | 83e6 51e9 | 6bf3 ffff | 4b8d 1ccc | e9db f8ff | ffff c18b 
+  0x00001526c55813d4: 5c24 34be | e4ff ffff | 4c8b 5c24 | 2049 8beb | 4c8b 5c24 | 184c 895c | 2408 448b | 5c24 2844 
+  0x00001526c55813f4: 895c 2418 | 448b 4424 | 2c44 8944 | 241c 448b | 5c24 4444 | 895c 2424 | 4489 4c24 | 2c89 5c24 
+  0x00001526c5581414: 30c5 fb11 | 4424 3844 | 8954 2434 | 894c 2440 | 4889 7c24 | 4889 5c24 
+
+  0x00001526c558142c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558142c: 4466 90e8 
+
+  0x00001526c5581430: ; ImmutableOopMap {rbp=Oop [8]=Oop [44]=NarrowOop [72]=Oop }
+                      ;*daload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoodsPerEvidence@48 (line 453)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@119 (line 435)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5581430: ccc1 58ff | 8be9 e96e | f9ff ff4d | 8b4f 4049 | 8b5f 50f0 | 8344 24c0 | 0080 3f00 | 0f84 55f9 
+  0x00001526c5581450: ffff 4488 | 274d 85c9 | 753d 4889 | 5424 104c | 895c 2408 | 4489 1424 | 448b e945 | 8bf0 498b 
+  0x00001526c5581470: f749 bac0 | 4065 da26 | 1500 0041 | ffd2 458b | c641 8bcd | 448b 1424 | 4c8b 5c24 | 0848 8b54 
+  0x00001526c5581490: 2410 e910 | f9ff ff4a | 897c 0bf8 | 4983 c1f8 | 4d89 4f40 | e9fe f8ff | ff8b 5d00 | 85db 0f84 
+  0x00001526c55814b0: c2f7 ffff | 4d8b 4f20 | 488b fb48 | c1e7 034d | 85c9 0f84 | 3013 0000 | 498b 5f30 | 4a89 7c0b 
+  0x00001526c55814d0: f849 83c1 | f84d 894f | 20e9 98f7 | ffff 4d8b | 5f40 4d8b | 4f50 f083 | 4424 c000 | 803f 000f 
+  0x00001526c55814f0: 84b7 f7ff | ff44 8827 | 4d85 db75 | 2b44 8954 | 2404 890c | 2445 8bf0 | 498b f749 | bac0 4065 
+  0x00001526c5581510: da26 1500 | 0041 ffd2 | 458b c68b | 0c24 448b | 5424 04e9 | 84f7 ffff | 4b89 7c19 | f849 83c3 
+  0x00001526c5581530: f84d 895f | 40e9 72f7 | ffff 418b | 4d00 85c9 | 0f84 6ae8 | ffff 4d8b | 5720 488b | f948 c1e7 
+  0x00001526c5581550: 034d 85d2 | 0f84 f612 | 0000 498b | 4f30 4a89 | 7c11 f849 | 83c2 f84d | 8957 20e9 | 40e8 ffff 
+  0x00001526c5581570: 4d8b 5750 | 498b 4f40 | f083 4424 | c000 803f | 000f 845a | e8ff ff44 | 8827 4885 | c975 2944 
+  0x00001526c5581590: 890c 244d | 8bf0 458b | eb49 8bf7 | 49ba c040 | 65da 2615 | 0000 41ff | d245 8bdd | 4d8b c644 
+  0x00001526c55815b0: 8b0c 24e9 | 29e8 ffff | 4989 7c0a | f848 83c1 | f849 894f | 40e9 17e8 | ffff 4c8b | 5424 3045 
+  0x00001526c55815d0: 8b5a 0c45 | 85db 0f84 | 33e9 ffff | 4d8b 5720 | 498b fb48 | c1e7 034d | 85d2 0f84 | 8f12 0000 
+  0x00001526c55815f0: 4d8b 5f30 | 4b89 7c13 | f849 83c2 | f84d 8957 | 20e9 09e9 | ffff 448b | 5d20 4585 | db0f 84f1 
+  0x00001526c5581610: eaff ff4d | 8b57 2049 | 8bfb 48c1 | e703 4d85 | d20f 846d | 1200 004d | 8b5f 304b | 897c 13f8 
+  0x00001526c5581630: 4983 c2f8 | 4d89 5720 | e9c7 eaff | ff44 8b5d | 2845 85db | 0f84 c5ea | ffff 4d8b | 5720 498b 
+  0x00001526c5581650: fb48 c1e7 | 034d 85d2 | 0f84 4b12 | 0000 4d8b | 5f30 4b89 | 7c13 f849 | 83c2 f84d | 8957 20e9 
+  0x00001526c5581670: 9bea ffff | 448b 5d1c | 4585 db0f | 8402 ebff | ff4d 8b57 | 2049 8bfb | 48c1 e703 | 4d85 d20f 
+  0x00001526c5581690: 8429 1200 | 004d 8b5f | 304b 897c | 13f8 4983 | c2f8 4d89 | 5720 e9d8 | eaff ff45 | 8b55 2445 
+  0x00001526c55816b0: 85d2 0f84 | 7aeb ffff | 4d8b 5f20 | 498b fa48 | c1e7 034d | 85db 0f84 | 1d12 0000 | 4d8b 5730 
+  0x00001526c55816d0: 4b89 7c1a | f849 83c3 | f84d 895f | 20e9 50eb | ffff 458b | 5620 4585 | d20f 849b | ebff ff4d 
+  0x00001526c55816f0: 8b5f 2049 | 8bfa 48c1 | e703 4d85 | db0f 84fb | 1100 004d | 8b57 304b | 897c 1af8 | 4983 c3f8 
+  0x00001526c5581710: 4d89 5f20 | e971 ebff | ff45 8b56 | 1c45 85d2 | 0f84 a4eb | ffff 4d8b | 5f20 498b | fa48 c1e7 
+  0x00001526c5581730: 034d 85db | 0f84 f111 | 0000 4d8b | 5730 4b89 | 7c1a f849 | 83c3 f84d | 895f 20e9 | 7aeb ffff 
+  0x00001526c5581750: 448b 5324 | 4585 d20f | 845c ecff | ff4d 8b5f | 2049 8bfa | 48c1 e703 | 4d85 db0f | 84e7 1100 
+  0x00001526c5581770: 004d 8b57 | 304b 897c | 1af8 4983 | c3f8 4d89 | 5f20 e932 | ecff ff45 | 8b56 2045 | 85d2 0f84 
+  0x00001526c5581790: 77ec ffff | 4d8b 5f20 | 498b fa48 | c1e7 034d | 85db 0f84 | c511 0000 | 4d8b 5730 | 4b89 7c1a 
+  0x00001526c55817b0: f849 83c3 | f84d 895f | 20e9 4dec | ffff 458b | 561c 4585 | d20f 847b | ecff ff4d | 8b5f 2049 
+  0x00001526c55817d0: 8bfa 48c1 | e703 4d85 | db0f 84b5 | 1100 004d | 8b57 304b | 897c 1af8 | 4983 c3f8 | 4d89 5f20 
+  0x00001526c55817f0: e951 ecff | ff45 8b44 | ec28 4585 | c00f 846c | edff ff4d | 8b5f 2049 | 8bf8 48c1 | e703 4d85 
+  0x00001526c5581810: db0f 84a0 | 1100 004d | 8b47 304b | 897c 18f8 | 4983 c3f8 | 4d89 5f20 | e942 edff 
+
+  0x00001526c558182c: ;   {no_reloc}
+  0x00001526c558182c: ff4c 8b6c | 2448 458b | 5d20 4585 | db0f 8404 | efff ff4d | 8b57 2049 | 8bfb 48c1 | e703 4d85 
+  0x00001526c558184c: d20f 8485 | 1100 004d | 8b5f 304b | 897c 13f8 | 4983 c2f8 | 4d89 5720 | e9da eeff | ff45 8b5d 
+  0x00001526c558186c: 2845 85db | 0f84 d8ee | ffff 4d8b | 5720 498b | fb48 c1e7 | 034d 85d2 | 0f84 6311 | 0000 4d8b 
+  0x00001526c558188c: 5f30 4b89 | 7c13 f849 | 83c2 f84d | 8957 20e9 | aeee ffff | 458b 551c | 4585 d20f | 8414 efff 
+  0x00001526c55818ac: ff4d 8b5f | 2049 8bfa | 48c1 e703 | 4d85 db0f | 8441 1100 | 004d 8b57 | 304b 897c | 1af8 4983 
+  0x00001526c55818cc: c3f8 4d89 | 5f20 e9ea | eeff ff44 | 8b5b 2445 | 85db 0f84 | 87ef ffff | 4d8b 5720 | 498b fb48 
+  0x00001526c55818ec: c1e7 034d | 85d2 0f84 | 3c11 0000 | 4d8b 5f30 | 4b89 7c13 | f849 83c2 | f84d 8957 | 20e9 5def 
+  0x00001526c558190c: ffff 458b | 5e20 4585 | db0f 84a1 | efff ff4d | 8b57 2049 | 8bfb 48c1 | e703 4d85 | d20f 841a 
+  0x00001526c558192c: 1100 004d | 8b5f 304b | 897c 13f8 | 4983 c2f8 | 4d89 5720 | e977 efff | ff45 8b5e | 1c45 85db 
+  0x00001526c558194c: 0f84 a5ef | ffff 4d8b | 5720 498b | fb48 c1e7 | 034d 85d2 | 0f84 b910 | 0000 4d8b | 5f30 4b89 
+  0x00001526c558196c: 7c13 f849 | 83c2 f84d | 8957 20e9 | 7bef ffff | 458b 54ec | 2845 85d2 | 0f84 96f0 | ffff 4d8b 
+  0x00001526c558198c: 5f20 498b | fa48 c1e7 | 034d 85db | 0f84 c010 | 0000 4d8b | 5730 4b89 | 7c1a f849 | 83c3 f84d 
+  0x00001526c55819ac: 895f 20e9 | 6cf0 ffff | 4d8b 5740 | 4d8b 5f50 | f083 4424 | c000 803f | 000f 8489 | e5ff ff44 
+  0x00001526c55819cc: 8827 4d85 | d275 1549 | 8bf7 49ba | c040 65da | 2615 0000 | 41ff d2e9 | 6ce5 ffff | 4b89 7c13 
+  0x00001526c55819ec: f849 83c2 | f84d 8957 | 40e9 5ae5 | ffff 4d8b | 5740 4d8b | 5f50 f083 | 4424 c000 | 803f 000f 
+  0x00001526c5581a0c: 8467 e7ff | ff44 8827 | 4d85 d275 | 2b4c 896c | 2408 891c | 244c 8bed | 498b f749 | bac0 4065 
+  0x00001526c5581a2c: da26 1500 | 0041 ffd2 | 498b ed8b | 1c24 4c8b | 6c24 08e9 | 34e7 ffff | 4b89 7c13 | f849 83c2 
+  0x00001526c5581a4c: f84d 8957 | 40e9 22e7 | ffff 4d8b | 5740 4d8b | 5f50 f083 | 4424 c000 | 803f 000f | 8412 e8ff 
+  0x00001526c5581a6c: ff44 8827 | 4d85 d275 | 2d48 895c | 2408 4c89 | 3424 4d8b | f549 8bf7 | 49ba c040 | 65da 2615 
+  0x00001526c5581a8c: 0000 41ff | d24d 8bee | 4c8b 3424 | 488b 5c24 | 08e9 dde7 | ffff 4b89 | 7c13 f849 | 83c2 f84d 
+  0x00001526c5581aac: 8957 40e9 | cbe7 ffff | 4d8b 5740 | 4d8b 5f50 | f083 4424 | c000 803f | 000f 84f4 | e7ff ff44 
+  0x00001526c5581acc: 8827 4d85 | d275 2d48 | 895c 2408 | 4c89 3424 | 4d8b f549 | 8bf7 49ba | c040 65da | 2615 0000 
+  0x00001526c5581aec: 41ff d24d | 8bee 4c8b | 3424 488b | 5c24 08e9 | bfe7 ffff | 4b89 7c13 | f849 83c2 | f84d 8957 
+  0x00001526c5581b0c: 40e9 ade7 | ffff 4d8b | 5740 4d8b | 5f50 f083 | 4424 c000 | 803f 000f | 84d7 e8ff | ff44 8827 
+  0x00001526c5581b2c: 4d85 d275 | 274c 8974 | 2408 4889 | 1c24 498b | f749 bac0 | 4065 da26 | 1500 0041 | ffd2 488b 
+  0x00001526c5581b4c: 1c24 4c8b | 7424 08e9 | a8e8 ffff | 4b89 7c13 | f849 83c2 | f84d 8957 | 40e9 96e8 | ffff 4d8b 
+  0x00001526c5581b6c: 5740 4d8b | 5f50 f083 | 4424 c000 | 803f 000f | 84ba e8ff | ff44 8827 | 4d85 d275 | 234c 8934 
+  0x00001526c5581b8c: 244c 8bf3 | 498b f749 | bac0 4065 | da26 1500 | 0041 ffd2 | 498b de4c | 8b34 24e9 | 8fe8 ffff 
+  0x00001526c5581bac: 4b89 7c13 | f849 83c2 | f84d 8957 | 40e9 7de8 | ffff 4d8b | 5740 4d8b | 5f50 f083 | 4424 c000 
+  0x00001526c5581bcc: 803f 000f | 84b6 eaff | ff44 8827 | 4d85 d275 | 1b41 8be8 | 498b f749 | bac0 4065 | da26 1500 
+  0x00001526c5581bec: 0041 ffd2 | 448b c5e9 | 93ea ffff | 4b89 7c13 | f849 83c2 | f84d 8957 | 40e9 81ea | ffff 4d8b 
+  0x00001526c5581c0c: 5740 4d8b | 5f50 f083 | 4424 c000 | 803f 000f | 8495 ebff | ff44 8827 | 4d85 d275 | 1d48 891c 
+  0x00001526c5581c2c: ;   {no_reloc}
+  0x00001526c5581c2c: 2449 8bf7 | 49ba c040 | 65da 2615 | 0000 41ff | d248 8b1c | 24e9 70eb | ffff 4b89 | 7c13 f849 
+  0x00001526c5581c4c: 83c2 f84d | 8957 40e9 | 5eeb ffff | 4d8b 5740 | 4d8b 5f50 | f083 4424 | c000 803f | 000f 847d 
+  0x00001526c5581c6c: ecff ff44 | 8827 4d85 | d275 1549 | 8bf7 49ba | c040 65da | 2615 0000 | 41ff d2e9 | 60ec ffff 
+  0x00001526c5581c8c: 4b89 7c13 | f849 83c2 | f84d 8957 | 40e9 4eec | ffff 4d8b | 5740 4d8b | 5f50 f083 | 4424 c000 
+  0x00001526c5581cac: 803f 000f | 84fc ebff | ff44 8827 | 4d85 d275 | 1549 8bf7 | 49ba c040 | 65da 2615 | 0000 41ff 
+  0x00001526c5581ccc: d2e9 dfeb | ffff 4b89 | 7c13 f849 | 83c2 f84d | 8957 40e9 | cdeb ffff | 4d8b 5740 | 4d8b 5f50 
+  0x00001526c5581cec: f083 4424 | c000 803f | 000f 8422 | e6ff ff44 | 8827 4d85 | d275 1d48 | 891c 2449 | 8bf7 49ba 
+  0x00001526c5581d0c: c040 65da | 2615 0000 | 41ff d248 | 8b1c 24e9 | fde5 ffff | 4b89 7c13 | f849 83c2 | f84d 8957 
+  0x00001526c5581d2c: 40e9 ebe5 | ffff 4d8b | 5740 4d8b | 5f50 f083 | 4424 c000 | 803f 000f | 8454 e7ff | ff44 8827 
+  0x00001526c5581d4c: 4d85 d275 | 234c 8934 | 244c 8bf3 | 498b f749 | bac0 4065 | da26 1500 | 0041 ffd2 | 498b de4c 
+  0x00001526c5581d6c: 8b34 24e9 | 29e7 ffff | 4b89 7c13 | f849 83c2 | f84d 8957 | 40e9 17e7 | ffff 4d8b | 5740 4d8b 
+  0x00001526c5581d8c: 5f50 f083 | 4424 c000 | 803f 000f | 84b1 ebff | ff44 8827 | 4d85 d275 | 1549 8bf7 | 49ba c040 
+  0x00001526c5581dac: 65da 2615 | 0000 41ff | d2e9 94eb | ffff 4b89 | 7c13 f849 | 83c2 f84d | 8957 40e9 | 82eb ffff 
+  0x00001526c5581dcc: 458b 5a28 | 4585 db0f | 84f1 e1ff | ff4d 8b57 | 2049 8bfb | 48c1 e703 | 4d85 d20f | 84b3 1000 
+  0x00001526c5581dec: 004d 8b5f | 304b 897c | 13f8 4983 | c2f8 4d89 | 5720 e9c7 | e1ff ff4d | 8b57 504d | 8b5f 40f0 
+  0x00001526c5581e0c: 8344 24c0 | 0080 3f00 | 0f84 f1e1 | ffff 4488 | 274d 85db | 7515 498b | f749 bac0 | 4065 da26 
+  0x00001526c5581e2c: 1500 0041 | ffd2 e9d4 | e1ff ff4b | 897c 1af8 | 4983 c3f8 | 4d89 5f40 | e9c2 e1ff | ff4c 895c 
+  0x00001526c5581e4c: 2430 4489 | 5424 2889 | 4c24 1444 | 8944 2410 | 4c8b 5424 | 184c 8954 
+
+  0x00001526c5581e64: ;   {metadata('java/util/Collections$UnmodifiableRandomAccessList')}
+  0x00001526c5581e64: 2408 48be | 208b 1e1f | 2615 0000 
+
+  0x00001526c5581e70: ;   {runtime_call _new_instance_Java}
+  0x00001526c5581e70: 6666 90e8 
+
+  0x00001526c5581e74: ; ImmutableOopMap {rbp=Oop [8]=Oop [20]=NarrowOop [32]=Oop [48]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.Collections::unmodifiableList@27 (line 1324)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleEvidence@13 (line 333)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::evidence@8 (line 1409)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@2 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5581e74: 8873 63ff | 4c8b 5424 | 084c 8954 | 2418 448b | 4424 108b | 4c24 1444 | 8b54 2428 | 4c8b 5c24 
+  0x00001526c5581e94: 30e9 cdee | ffff 4889 | 5c24 3089 | 7c24 2c44 | 8954 2428 | 894c 2414 | 4489 4424 | 104c 8b54 
+  0x00001526c5581eb4: 2418 4c89 
+
+  0x00001526c5581eb8: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods$SampleMatrix')}
+  0x00001526c5581eb8: 5424 0848 | be18 612c | 2026 1500 | 0044 8b5c | 2428 4489 
+
+  0x00001526c5581ecc: ;   {runtime_call _new_instance_Java}
+  0x00001526c5581ecc: 5c24 1ce8 
+
+  0x00001526c5581ed0: ; ImmutableOopMap {rbp=Derived_oop_[48] [8]=Oop [20]=NarrowOop [32]=Oop [44]=NarrowOop [48]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleMatrix@30 (line 361)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@75 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5581ed0: 2c73 63ff | 4c8b 5424 | 084c 8954 | 2418 448b | 4424 108b | 4c24 1444 | 8b54 2428 | 8b7c 242c 
+  0x00001526c5581ef0: 4c8b d8e9 | 59ed ffff 
+
+  0x00001526c5581ef8: ;   {metadata('org/broadinstitute/hellbender/utils/haplotype/Haplotype'[])}
+  0x00001526c5581ef8: 48be b879 | 6120 2615 | 0000 8b14 | 244c 8944 
+
+  0x00001526c5581f08: ;   {runtime_call _new_array_Java}
+  0x00001526c5581f08: 2428 90e8 
+
+  0x00001526c5581f0c: ; ImmutableOopMap {rbp=NarrowOop [8]=Oop [16]=Oop [32]=Oop [40]=Oop }
+                      ;*anewarray {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.AssemblyResultSet::getHaplotypeList@13 (line 430)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@8 (line 175)
+  0x00001526c5581f0c: f075 63ff | 4c8b c8e9 | 9edd ffff 
+
+  0x00001526c5581f18: ;   {metadata('java/util/Arrays$ArrayList')}
+  0x00001526c5581f18: 48be 2088 | 1d1f 2615 | 0000 488b 
+
+  0x00001526c5581f24: ;   {runtime_call _new_instance_Java}
+  0x00001526c5581f24: 6c24 20e8 
+
+  0x00001526c5581f28: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [32]=Oop [48]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.Arrays::asList@0 (line 4122)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.AssemblyResultSet::getHaplotypeList@24 (line 430)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@8 (line 175)
+  0x00001526c5581f28: d472 63ff | e905 dfff | ff4c 8944 | 2410 4c89 | 5c24 084c 
+
+  0x00001526c5581f3c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/IndexedAlleleList')}
+  0x00001526c5581f3c: 8914 2448 | bea0 5e2c | 2026 1500 
+
+  0x00001526c5581f48: ;   {runtime_call _new_instance_Java}
+  0x00001526c5581f48: 0066 90e8 
+
+  0x00001526c5581f4c: ; ImmutableOopMap {[0]=Oop [8]=Oop [16]=Oop [32]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@22 (line 189)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5581f4c: b072 63ff | 4c8b 1424 | 4c8b 5c24 | 084c 8b44 | 2410 e939 | dfff ff48 | 894c 2430 | 4c89 4424 
+  0x00001526c5581f6c: 284c 895c | 2418 4c89 
+
+  0x00001526c5581f74: ;   {metadata('org/broadinstitute/hellbender/utils/collections/IndexedSet')}
+  0x00001526c5581f74: 5424 1048 | be00 f32a | 2026 1500 
+
+  0x00001526c5581f80: ;   {runtime_call _new_instance_Java}
+  0x00001526c5581f80: 0066 90e8 
+
+  0x00001526c5581f84: ; ImmutableOopMap {[16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::<init>@5 (line 57)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@27 (line 189)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5581f84: 7872 63ff | e966 dfff | ff4c 8b54 | 2438 4c89 | 5424 084c | 8b54 2430 | 4c89 1424 
+
+  0x00001526c5581fa0: ;   {metadata('java/util/HashMap$EntrySpliterator')}
+  0x00001526c5581fa0: 48be 4069 | 5520 2615 
+
+  0x00001526c5581fa8: ;   {runtime_call _new_instance_Java}
+  0x00001526c5581fa8: 0000 90e8 
+
+  0x00001526c5581fac: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [56]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.HashMap$EntrySet::spliterator@0 (line 1116)
+                      ; - java.util.Collection::stream@1 (line 743)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@6 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5581fac: 5072 63ff | 4c8b 1424 | 4c89 5424 | 30e9 a2e0 
+
+  0x00001526c5581fbc: ;   {metadata('java/util/stream/ReferencePipeline$Head')}
+  0x00001526c5581fbc: ffff 48be | 2890 0f1f | 2615 0000 | 488b 6c24 
+
+  0x00001526c5581fcc: ;   {runtime_call _new_instance_Java}
+  0x00001526c5581fcc: 2066 90e8 
+
+  0x00001526c5581fd0: ; ImmutableOopMap {rbp=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.stream.StreamSupport::stream@5 (line 69)
+                      ; - java.util.Collection::stream@7 (line 743)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@6 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5581fd0: 2c72 63ff | 488b e8e9 | efe0 ffff | 4c89 6c24 | 084c 8b54 | 2438 4c89 | 1424 488b 
+
+  0x00001526c5581fec: ;   {metadata('java/util/stream/ReferencePipeline$7')}
+  0x00001526c5581fec: 6c24 3048 | be78 282a | 1f26 1500 
+
+  0x00001526c5581ff8: ;   {runtime_call _new_instance_Java}
+  0x00001526c5581ff8: 0066 90e8 
+
+  0x00001526c5581ffc: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [56]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.stream.ReferencePipeline::flatMap@5 (line 258)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@16 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5581ffc: 0072 63ff | 4889 6c24 | 304c 8b6c | 2408 4c8b | f0e9 f0e1 | ffff 4889 | 5c24 084c | 8b54 2438 
+  0x00001526c558201c: 4c89 1424 | 488b 6c24 
+
+  0x00001526c5582024: ;   {metadata('java/util/stream/ReferencePipeline$4')}
+  0x00001526c5582024: 3048 be50 | 9f54 2026 
+
+  0x00001526c558202c: ;   {runtime_call _new_instance_Java}
+  0x00001526c558202c: 1500 00e8 
+
+  0x00001526c5582030: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [56]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.stream.ReferencePipeline::mapToInt@5 (line 207)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@26 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582030: cc71 63ff | 4889 6c24 | 3048 8b5c | 2408 4c8b | f0e9 49e3 | ffff 4c89 | 4424 084c | 8b54 2438 
+  0x00001526c5582050: 4c89 1424 | 488b 6c24 
+
+  0x00001526c5582058: ;   {metadata('java/util/stream/ReduceOps$7')}
+  0x00001526c5582058: 3048 be58 | a654 2026 
+
+  0x00001526c5582060: ;   {runtime_call _new_instance_Java}
+  0x00001526c5582060: 1500 00e8 
+
+  0x00001526c5582064: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [56]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.stream.ReduceOps::makeInt@5 (line 362)
+                      ; - java.util.stream.IntPipeline::reduce@2 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582064: 9871 63ff | 4889 6c24 | 304c 8b44 | 2408 e982 | e4ff ff4c | 894c 2408 | 4489 0424 
+
+  0x00001526c5582080: ;   {metadata('java/util/Spliterators$ArraySpliterator')}
+  0x00001526c5582080: 48be d8a7 | 101f 2615 
+
+  0x00001526c5582088: ;   {runtime_call _new_instance_Java}
+  0x00001526c5582088: 0000 90e8 
+
+  0x00001526c558208c: ; ImmutableOopMap {rbp=NarrowOop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.Spliterators::spliterator@0 (line 142)
+                      ; - java.util.Arrays$ArrayList::spliterator@6 (line 4197)
+                      ; - java.util.Collection::stream@1 (line 743)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@42 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c558208c: 7071 63ff | 448b 0424 | 4c8b 5c24 | 084c 895c | 2440 4c8b | e8e9 ace5 | ffff 4889 | 1c24 4489 
+  0x00001526c55820ac: ;   {metadata('java/util/stream/ReferencePipeline$Head')}
+  0x00001526c55820ac: 4424 2848 | be28 900f | 1f26 1500 | 0048 8b6c 
+
+  0x00001526c55820bc: ;   {runtime_call _new_instance_Java}
+  0x00001526c55820bc: 2420 90e8 
+
+  0x00001526c55820c0: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.stream.StreamSupport::stream@5 (line 69)
+                      ; - java.util.Collection::stream@7 (line 743)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@42 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55820c0: 3c71 63ff | 4c8b d8e9 | 29e6 ffff 
+
+  0x00001526c55820cc: ;   {metadata('java/util/stream/ReferencePipeline$4')}
+  0x00001526c55820cc: 488b eb48 | be50 9f54 | 2026 1500 | 004c 8b54 | 2420 4c89 
+
+  0x00001526c55820e0: ;   {runtime_call _new_instance_Java}
+  0x00001526c55820e0: 1424 90e8 
+
+  0x00001526c55820e4: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.stream.ReferencePipeline::mapToInt@5 (line 207)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@52 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55820e4: 1871 63ff | 488b dd4c | 8bf0 e94e 
+
+  0x00001526c55820f0: ;   {metadata('java/util/stream/ReduceOps$7')}
+  0x00001526c55820f0: e7ff ff48 | be58 a654 | 2026 1500 | 0048 8b6c 
+
+  0x00001526c5582100: ;   {runtime_call _new_instance_Java}
+  0x00001526c5582100: 2420 90e8 
+
+  0x00001526c5582104: ; ImmutableOopMap {rbp=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [64]=Oop [80]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.stream.ReduceOps::makeInt@5 (line 362)
+                      ; - java.util.stream.IntPipeline::reduce@2 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582104: f870 63ff | e99e e8ff 
+
+  0x00001526c558210c: ;   {metadata('org/broadinstitute/hellbender/utils/genotyper/AlleleLikelihoods')}
+  0x00001526c558210c: ff48 bec0 | 422c 2026 | 1500 0048 | 8b6c 2420 
+
+  0x00001526c558211c: ;   {runtime_call _new_instance_Java}
+  0x00001526c558211c: 6666 90e8 
+
+  0x00001526c5582120: ; ImmutableOopMap {rbp=Oop [16]=Oop [32]=Oop [48]=Oop [56]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@39 (line 194)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582120: dc70 63ff | e907 eaff 
+
+  0x00001526c5582128: ;   {metadata('java/util/HashMap$EntrySet')}
+  0x00001526c5582128: ff48 beb8 | 7d11 1f26 | 1500 0048 | 8b6c 2420 
+
+  0x00001526c5582138: ;   {runtime_call _new_instance_Java}
+  0x00001526c5582138: 6666 90e8 
+
+  0x00001526c558213c: ; ImmutableOopMap {rbp=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [56]=Oop }
+                      ;*new {reexecute=0 rethrow=0 return_oop=1}
+                      ; - java.util.HashMap::entrySet@10 (line 1091)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@1 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c558213c: c070 63ff | 488b d8e9 | 67de ffff | bede ffff | ff48 8b6c | 2420 4c89 | 5424 0844 | 8b5c 2428 
+  0x00001526c558215c: 4489 5c24 | 1844 8b54 | 242c 4489 | 5424 1c44 | 8b5c 2430 | 4489 5c24 | 2044 8b54 | 2434 4489 
+  0x00001526c558217c: 5424 28c5 | fb11 4424 | 3844 8944 
+
+  0x00001526c5582188: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582188: 2434 90e8 
+
+  0x00001526c558218c: ; ImmutableOopMap {rbp=Oop [8]=Oop [32]=NarrowOop [52]=NarrowOop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoodsPerEvidence@25 (line 449)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@119 (line 435)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c558218c: 70b4 58ff | bede ffff | ff48 8b6c | 2420 4c8b | 5424 184c | 8954 2408 | 448b 5424 | 2844 8954 
+  0x00001526c55821ac: 2418 448b | 5c24 2c44 | 895c 241c | 448b 5424 | 3044 8954 | 2420 448b | 5424 3444 | 8954 2428 
+  0x00001526c55821cc: c5fb 1144 | 2438 4489 
+
+  0x00001526c55821d4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55821d4: 4424 34e8 
+
+  0x00001526c55821d8: ; ImmutableOopMap {rbp=Oop [8]=Oop [32]=NarrowOop [52]=NarrowOop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoodsPerEvidence@25 (line 449)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@119 (line 435)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55821d8: 24b4 58ff | be76 ffff | ff48 8b6c | 2420 4c8b | 5c24 184c | 895c 2408 | 448b 4424 | 2844 8944 
+  0x00001526c55821f8: 2418 448b | 5c24 2c44 | 895c 241c | 448b 4424 | 3044 8944 | 2420 448b | 4424 3444 | 8944 2430 
+  0x00001526c5582218: c5fb 1144 | 2438 4489 
+
+  0x00001526c5582220: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582220: 5424 40e8 
+
+  0x00001526c5582224: ; ImmutableOopMap {rbp=Oop [8]=Oop [32]=NarrowOop }
+                      ;*if_icmpge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoodsPerEvidence@39 (line 452)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@119 (line 435)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582224: d8b3 58ff | 33c9 e9a8 | f1ff ffbe | e4ff ffff | 488b 6c24 | 2044 8944 | 2408 4489 | 5424 2089 
+  0x00001526c5582244: 7c24 2444 | 8954 2428 
+
+  0x00001526c558224c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558224c: 6666 90e8 
+
+  0x00001526c5582250: ; ImmutableOopMap {rbp=Oop [24]=Oop [36]=NarrowOop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleMatrix@19 (line 359)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@75 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582250: acb3 58ff | bee4 ffff | ff48 8b4c | 2418 4889 | 0c24 4489 | 4424 0844 | 8954 240c | 4c89 5c24 
+  0x00001526c5582270: 1848 897c | 2428 895c | 2434 4489 
+
+  0x00001526c558227c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558227c: 4c24 38e8 
+
+  0x00001526c5582280: ; ImmutableOopMap {[0]=Oop [24]=Oop [32]=Oop [40]=Oop }
+                      ;*invokestatic checkIndex {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.Objects::checkIndex@3 (line 361)
+                      ; - java.util.ArrayList::get@5 (line 427)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleEvidence@5 (line 333)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::evidence@8 (line 1409)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@2 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582280: 7cb3 58ff | bee4 ffff | ff4c 8b4c | 2418 4c89 | 0c24 4489 | 4424 0844 | 8954 240c | 4c89 5c24 
+  0x00001526c55822a0: 1889 7c24 | 2889 5c24 
+
+  0x00001526c55822a8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55822a8: 2c66 90e8 
+
+  0x00001526c55822ac: ; ImmutableOopMap {[0]=Oop [24]=Oop [32]=Oop [40]=NarrowOop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList::elementData@5 (line 411)
+                      ; - java.util.ArrayList::get@11 (line 428)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleEvidence@5 (line 333)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::evidence@8 (line 1409)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@2 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55822ac: 50b3 58ff | bede ffff | ff4c 8b5c | 2418 4c89 | 1c24 4489 | 4424 0844 | 8954 240c | 4889 5c24 
+  0x00001526c55822cc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55822cc: 2866 90e8 
+
+  0x00001526c55822d0: ; ImmutableOopMap {[0]=Oop [32]=Oop [40]=Oop }
+                      ;*invokeinterface evidence {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@2 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55822d0: 2cb3 58ff | bede ffff | ff48 8b4c | 2418 4889 | 0c24 4489 | 4424 0844 | 8954 240c | 4c89 5c24 
+  0x00001526c55822f0: 1844 894c | 2428 895c 
+
+  0x00001526c55822f8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55822f8: 242c 90e8 
+
+  0x00001526c55822fc: ; ImmutableOopMap {[0]=Oop [24]=Oop [32]=Oop [40]=NarrowOop }
+                      ;*invokeinterface get {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleEvidence@5 (line 333)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::evidence@8 (line 1409)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@2 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55822fc: 00b3 58ff | becc ffff | ff48 8b4c | 2418 4889 | 0c24 4489 | 4424 0844 | 8954 240c | 4c89 5c24 
+  0x00001526c558231c: 1848 897c | 2428 895c | 2434 4489 
+
+  0x00001526c5582328: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582328: 4c24 38e8 
+
+  0x00001526c558232c: ; ImmutableOopMap {[0]=Oop [24]=Oop [32]=Oop [40]=Oop }
+                      ;*invokestatic checkIndex {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.Objects::checkIndex@3 (line 361)
+                      ; - java.util.ArrayList::get@5 (line 427)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleEvidence@5 (line 333)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::evidence@8 (line 1409)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@2 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c558232c: d0b2 58ff | bede ffff | ff48 8b6c | 2420 4c8b | 5424 184c | 8914 2444 | 8b54 2410 | 4489 5424 
+  0x00001526c558234c: 0844 8b5c | 2414 4489 | 5c24 0c4c | 8b54 2428 | 4c89 5424 | 1848 8944 
+
+  0x00001526c5582364: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582364: 2428 90e8 
+
+  0x00001526c5582368: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [40]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@15 (line 264)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582368: 94b2 58ff | bede ffff | ff48 8b6c | 2420 4c8b | 4424 184c | 8904 2444 | 8b4c 2410 | 4489 4c24 
+  0x00001526c5582388: 0844 8b44 | 2414 4489 | 4424 0c44 | 8954 2410 | 4889 4c24 | 2044 895c 
+
+  0x00001526c55823a0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55823a0: 2414 90e8 
+
+  0x00001526c55823a4: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=NarrowOop [20]=NarrowOop [32]=Oop [40]=Oop }
+                      ;*invokevirtual computeLog10Likelihoods {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@128 (line 272)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55823a4: 58b2 58ff | bed6 ffff | ff48 8b6c | 2420 4c8b | 4c24 184c | 890c 2444 | 8944 2408 | 897c 2420 
+  0x00001526c55823c4: 4489 5424 | 244c 895c 
+
+  0x00001526c55823cc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55823cc: 2428 90e8 
+
+  0x00001526c55823d0: ; ImmutableOopMap {rbp=Oop [0]=Oop [32]=NarrowOop [40]=Oop }
+                      ;*aastore {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleMatrix@40 (line 361)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@75 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55823d0: 2cb2 58ff | be76 ffff | ff48 8b6c | 2420 4c8b | 5424 184c | 8914 2444 | 8b5c 2410 | 4489 5c24 
+  0x00001526c55823f0: 0844 8b54 | 2414 4489 | 5424 0c4c | 8b54 2428 | 4c89 5424 | 1848 894c | 2420 895c 
+
+  0x00001526c558240c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558240c: 2428 90e8 
+
+  0x00001526c5582410: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [32]=Oop }
+                      ;*if_icmpge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@20 (line 264)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582410: ecb1 58ff | 41b9 0100 | 0000 e90a | ebff ffbe | e4ff ffff | 4c8b 4424 | 204c 8904 | 244c 8b44 
+  0x00001526c5582430: 2418 4c89 | 4424 10c5 | fb11 4424 | 1844 8954 | 2420 4489 
+
+  0x00001526c5582444: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582444: 5c24 24e8 
+
+  0x00001526c5582448: ; ImmutableOopMap {[0]=Oop [16]=Oop [36]=NarrowOop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@76 (line 432)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582448: b4b1 58ff | bee4 ffff | ff48 8b4c | 2420 4889 | 0c24 488b | 4c24 1848 | 894c 2410 | c5fb 1144 
+  0x00001526c5582468: 2418 4489 | 5424 2044 | 894c 2424 | 4c89 5c24 | 2844 8944 
+
+  0x00001526c558247c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558247c: 2438 90e8 
+
+  0x00001526c5582480: ; ImmutableOopMap {[0]=Oop [16]=Oop [36]=NarrowOop [40]=Oop }
+                      ;*invokestatic checkIndex {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.Objects::checkIndex@3 (line 361)
+                      ; - java.util.ArrayList::get@5 (line 427)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@85 (line 433)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582480: 7cb1 58ff | bee4 ffff | ff4c 8b44 | 2420 4c89 | 0424 4c8b | 4424 184c | 8944 2410 | c5fb 1144 
+  0x00001526c55824a0: 2418 4489 | 5424 2044 | 894c 2424 | 4489 5c24 
+
+  0x00001526c55824b0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55824b0: 2866 90e8 
+
+  0x00001526c55824b4: ; ImmutableOopMap {[0]=Oop [16]=Oop [36]=NarrowOop [40]=NarrowOop }
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList::elementData@5 (line 411)
+                      ; - java.util.ArrayList::get@11 (line 428)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@85 (line 433)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55824b4: 48b1 58ff | bede ffff | ff4c 8b5c | 2420 4c89 | 1c24 4c8b | 5c24 184c | 895c 2410 | c5fb 1144 
+  0x00001526c55824d4: 2418 4489 | 5424 2044 | 894c 2424 | 4489 4424 
+
+  0x00001526c55824e4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55824e4: 2866 90e8 
+
+  0x00001526c55824e8: ; ImmutableOopMap {[0]=Oop [16]=Oop [36]=NarrowOop [40]=NarrowOop }
+                      ;*invokeinterface get {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@85 (line 433)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55824e8: 14b1 58ff | becc ffff | ff48 8b4c | 2420 4889 | 0c24 488b | 4c24 1848 | 894c 2410 | c5fb 1144 
+  0x00001526c5582508: 2418 4489 | 5424 2044 | 894c 2424 | 4c89 5c24 | 2844 8944 
+
+  0x00001526c558251c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558251c: 2438 90e8 
+
+  0x00001526c5582520: ; ImmutableOopMap {[0]=Oop [16]=Oop [36]=NarrowOop [40]=Oop }
+                      ;*invokestatic checkIndex {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.Objects::checkIndex@3 (line 361)
+                      ; - java.util.ArrayList::get@5 (line 427)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@85 (line 433)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582520: dcb0 58ff | bebe ffff | ff4c 8b5c | 2420 4c89 | 1c24 4c8b | 5c24 184c | 895c 2410 | c5fb 1144 
+  0x00001526c5582540: 2418 4489 | 5424 2044 | 894c 2424 | 4489 4424 
+
+  0x00001526c5582550: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582550: 2c66 90e8 
+
+  0x00001526c5582554: ; ImmutableOopMap {[0]=Oop [16]=Oop [36]=NarrowOop }
+                      ;*if_icmpge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@107 (line 434)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582554: a8b0 58ff | bede ffff | ff48 8b6c | 2420 4489 | 4424 0844 | 8954 2420 | 4489 5424 | 2444 894c 
+  0x00001526c5582574: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582574: 2428 90e8 
+
+  0x00001526c5582578: ; ImmutableOopMap {rbp=Oop [24]=Oop [40]=NarrowOop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedSampleList::numberOfSamples@4 (line 61)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleMatrix@5 (line 358)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@75 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582578: 84b0 58ff | bee4 ffff | ff4c 8b5c | 2420 4c89 | 1c24 4489 | 4c24 1c4c | 8944 2438 | 4489 5424 
+  0x00001526c5582598: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582598: 4066 90e8 
+
+  0x00001526c558259c: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [16]=Oop [48]=Oop [56]=Oop }
+                      ;*aastore {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.LinkedHashMap::keysToArray@25 (line 545)
+                      ; - java.util.HashSet::toArray@12 (line 373)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.AssemblyResultSet::getHaplotypeList@16 (line 430)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@8 (line 175)
+  0x00001526c558259c: 60b0 58ff | bede ffff | ff44 8954 
+
+  0x00001526c55825a8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55825a8: 2408 90e8 
+
+  0x00001526c55825ac: ; ImmutableOopMap {rbp=NarrowOop [48]=Oop }
+                      ;*aastore {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.LinkedHashMap::keysToArray@25 (line 545)
+                      ; - java.util.HashSet::toArray@12 (line 373)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.AssemblyResultSet::getHaplotypeList@16 (line 430)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@8 (line 175)
+  0x00001526c55825ac: 50b0 58ff | 4963 cae9 | 1ed6 ffff | bede ffff 
+
+  0x00001526c55825bc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55825bc: ff66 90e8 
+
+  0x00001526c55825c0: ; ImmutableOopMap {rbp=NarrowOop [8]=Oop [16]=Oop [32]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.AssemblyResultSet::getHaplotypeList@8 (line 430)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@8 (line 175)
+  0x00001526c55825c0: 3cb0 58ff | bede ffff | ff4c 8b54 | 2420 4c89 
+
+  0x00001526c55825d0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55825d0: 1424 90e8 
+
+  0x00001526c55825d4: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [16]=Oop [48]=Oop }
+                      ;*invokevirtual keysToArray {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.HashSet::toArray@12 (line 373)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.AssemblyResultSet::getHaplotypeList@16 (line 430)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@8 (line 175)
+  0x00001526c55825d4: 28b0 58ff | bede ffff | ff48 8b6c | 2420 4c8b | 5424 104c | 8954 2408 | 4c8b 5424 | 304c 8954 
+  0x00001526c55825f4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55825f4: 2420 90e8 
+
+  0x00001526c55825f8: ; ImmutableOopMap {rbp=Oop [8]=Oop [24]=Oop [32]=Oop [40]=Oop }
+                      ;*invokeinterface entrySet {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@1 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55825f8: 04b0 58ff | bede ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 
+
+  0x00001526c5582614: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582614: 2066 90e8 
+
+  0x00001526c5582618: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [56]=Oop }
+                      ;*invokeinterface stream {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@6 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582618: e4af 58ff | bede ffff | ff48 8b6c | 2420 4c8b | 5424 104c | 8954 2408 | 4c8b 5424 | 184c 8954 
+  0x00001526c5582638: 2410 4c8b | 5424 304c | 8954 2418 | 4c8b 5424 | 284c 8954 | 2420 4c89 
+
+  0x00001526c5582650: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582650: 6c24 30e8 
+
+  0x00001526c5582654: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop }
+                      ;*invokeinterface flatMap {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@16 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582654: a8af 58ff | bede ffff | ff48 8b6c | 2420 4c8b | 5424 104c | 8954 2408 | 4c8b 5424 | 184c 8954 
+  0x00001526c5582674: 2410 4c8b | 5424 304c | 8954 2418 | 4c8b 5424 | 284c 8954 | 2420 4889 
+
+  0x00001526c558268c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558268c: 5c24 30e8 
+
+  0x00001526c5582690: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop }
+                      ;*invokeinterface mapToInt {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@26 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582690: 6caf 58ff | bede ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 
+
+  0x00001526c55826ac: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55826ac: 2066 90e8 
+
+  0x00001526c55826b0: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [56]=Oop }
+                      ;*invokeinterface max {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55826b0: 4caf 58ff | bede ffff | ff48 8b6c | 2420 4c8b | 5424 104c | 8954 2408 | 4c8b 5424 | 184c 8954 
+  0x00001526c55826d0: 2410 4c8b | 5424 304c | 8954 2418 | 4c8b 5424 | 384c 8954 | 2428 4489 | 4424 304c | 894c 2438 
+  0x00001526c55826f0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55826f0: 6666 90e8 
+
+  0x00001526c55826f4: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [40]=Oop [56]=Oop }
+                      ;*invokeinterface stream {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@42 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55826f4: 08af 58ff | bede ffff | ff48 8b6c | 2420 4c8b | 5424 104c | 8954 2408 | 4c8b 5424 | 184c 8954 
+  0x00001526c5582714: 2410 4c8b | 5424 304c | 8954 2418 | 4c8b 5424 | 384c 8954 | 2430 4889 
+
+  0x00001526c558272c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558272c: 5c24 38e8 
+
+  0x00001526c5582730: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface mapToInt {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@52 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582730: ccae 58ff | bede ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 
+
+  0x00001526c558274c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558274c: 2066 90e8 
+
+  0x00001526c5582750: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [56]=Oop [64]=Oop }
+                      ;*invokeinterface max {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582750: acae 58ff | bede ffff | ff4c 8914 | 244c 8b54 | 2410 4c89 | 5424 084c | 8b54 2418 | 4c89 5424 
+  0x00001526c5582770: 104c 8b54 | 2430 4c89 | 5424 1844 | 894c 242c 
+
+  0x00001526c5582780: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582780: 6666 90e8 
+
+  0x00001526c5582784: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [8]=Oop [16]=Oop [24]=Oop [56]=Oop [64]=Oop }
+                      ;*invokevirtual initialize {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@77 (line 257)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582784: 78ae 58ff | bede ffff | ff48 8b6c | 2420 895c 
+
+  0x00001526c5582794: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582794: 2408 90e8 
+
+  0x00001526c5582798: ; ImmutableOopMap {rbp=Oop [8]=NarrowOop [24]=Oop }
+                      ;*invokeinterface numberOfSamples {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::numberOfSamples@4 (line 271)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@55 (line 195)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582798: 64ae 58ff | bede ffff 
+
+  0x00001526c55827a0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55827a0: ff66 90e8 
+
+  0x00001526c55827a4: ; ImmutableOopMap {rbp=NarrowOop [24]=Oop [32]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedSampleList::numberOfSamples@4 (line 61)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::numberOfSamples@4 (line 271)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@55 (line 195)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55827a4: 58ae 58ff | bede ffff | ff4c 8b5c | 2420 4c89 | 1c24 4c8b | 5c24 184c | 895c 2410 | c5fb 1144 
+  0x00001526c55827c4: 2418 4489 
+
+  0x00001526c55827c8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55827c8: 5424 20e8 
+
+  0x00001526c55827cc: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [16]=Oop }
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@37 (line 424)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55827cc: 30ae 58ff | bede ffff | ff4c 8b5c | 2420 4c89 | 1c24 4c8b | 5c24 184c | 895c 2410 | c5fb 1144 
+  0x00001526c55827ec: 2418 4489 
+
+  0x00001526c55827f0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55827f0: 5424 20e8 
+
+  0x00001526c55827f4: ; ImmutableOopMap {rbp=NarrowOop [0]=Oop [16]=Oop }
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@37 (line 424)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55827f4: 08ae 58ff | 4c89 5c24 | 0844 8954 | 2404 890c | 2445 8bf0 | 498b f749 | ba90 4065 | da26 1500 
+  0x00001526c5582814: 0041 ffd2 | 458b c68b | 0c24 448b | 5424 044c | 8b5c 2408 | e949 e4ff | ffbe 45ff | ffff 488b 
+  0x00001526c5582834: 6c24 2044 | 8944 2408 | 4489 5424 | 2044 8954 | 2424 4489 
+
+  0x00001526c5582848: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582848: 5c24 30e8 
+
+  0x00001526c558284c: ; ImmutableOopMap {rbp=Oop [24]=Oop }
+                      ;*if_icmplt {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::validIndex@20 (line 772)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleMatrix@10 (line 358)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@75 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c558284c: b0ad 58ff | 4489 4c24 | 1c4c 8944 | 2428 458b | f349 8bf7 | 49ba 9040 | 65da 2615 | 0000 41ff 
+  0x00001526c558286c: d245 8bde | 4c8b 4424 | 2844 8b4c | 241c e931 | d5ff ff49 | 8bf7 49ba | 9040 65da | 2615 0000 
+  0x00001526c558288c: 41ff d2e9 | 7bd6 ffff | 498b f749 | ba90 4065 | da26 1500 | 0041 ffd2 | e95b d8ff | ff49 8bf7 
+  0x00001526c55828ac: 49ba 9040 | 65da 2615 | 0000 41ff | d2e9 51d8 | ffff 4c89 | 6c24 0889 | 1c24 4c8b | ed49 8bf7 
+  0x00001526c55828cc: 49ba 9040 | 65da 2615 | 0000 41ff | d249 8bed | 8b1c 244c | 8b6c 2408 | e99a d8ff | ff49 8bf7 
+  0x00001526c55828ec: 49ba 9040 | 65da 2615 | 0000 41ff | d2e9 34d9 | ffff 4889 | 5c24 084c | 8934 244d | 8bf5 498b 
+  0x00001526c558290c: f749 ba90 | 4065 da26 | 1500 0041 | ffd2 4d8b | ee4c 8b34 | 2448 8b5c | 2408 e95f | d9ff ff48 
+  0x00001526c558292c: 895c 2408 | 4c89 3424 | 4d8b f549 | 8bf7 49ba | 9040 65da | 2615 0000 | 41ff d24d | 8bee 4c8b 
+  0x00001526c558294c: 3424 488b | 5c24 08e9 | 72d9 ffff | 498b f749 | ba90 4065 | da26 1500 | 0041 ffd2 | e94c daff 
+  0x00001526c558296c: ff4c 8974 | 2408 4889 | 1c24 498b | f749 ba90 | 4065 da26 | 1500 0041 | ffd2 488b | 1c24 4c8b 
+  0x00001526c558298c: 7424 08e9 | 77da ffff | 4c89 3424 | 4c8b f349 | 8bf7 49ba | 9040 65da | 2615 0000 | 41ff d249 
+  0x00001526c55829ac: 8bde 4c8b | 3424 e98f | daff ff45 | 8bf2 4d8b | e949 8bf7 | 49ba 9040 | 65da 2615 | 0000 41ff 
+  0x00001526c55829cc: d24d 8bcd | 458b d6e9 | 97db ffff | 498b f749 | ba90 4065 | da26 1500 | 0041 ffd2 | e956 ddff 
+  0x00001526c55829ec: ff49 8bf7 | 49ba 9040 | 65da 2615 | 0000 41ff | d2e9 4cdd | ffff 4889 | 1c24 498b | f749 ba90 
+  0x00001526c5582a0c: 4065 da26 | 1500 0041 | ffd2 488b | 1c24 e9a2 | ddff ff49 | 8bf7 49ba | 9040 65da | 2615 0000 
+  0x00001526c5582a2c: 41ff d2e9 | c3de ffff | 498b f749 | ba90 4065 | da26 1500 | 0041 ffd2 | e922 deff | ff49 8bf7 
+  0x00001526c5582a4c: 49ba 9040 | 65da 2615 | 0000 41ff | d2e9 5ede | ffff 498b | f749 ba90 | 4065 da26 | 1500 0041 
+  0x00001526c5582a6c: ffd2 e9ad | dfff ffc5 | f92e c8bd | ffff ffff | 0f8a 0e00 | 0000 0f82 | 0800 0000 | 400f 95c5 
+  0x00001526c5582a8c: 400f b6ed | f7dd be45 | ffff ff4c | 8b5c 2420 | 4c89 1c24 | 4c8b 5c24 | 184c 895c | 2410 c5fb 
+  0x00001526c5582aac: 1144 2418 | 4489 5424 
+
+  0x00001526c5582ab4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582ab4: 2066 90e8 
+
+  0x00001526c5582ab8: ; ImmutableOopMap {[0]=Oop [16]=Oop }
+                      ;*ifge {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@3 (line 417)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582ab8: 44ab 58ff | be45 ffff | ff48 8b6c | 2420 4c89 
+
+  0x00001526c5582ac8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582ac8: 0424 90e8 
+
+  0x00001526c5582acc: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [16]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::nonNull@1 (line 642)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@3 (line 185)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582acc: 30ab 58ff | be45 ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 | 204c 8b54 
+  0x00001526c5582aec: 2438 4c89 | 5424 304c | 8974 2448 | 4c89 6c24 
+
+  0x00001526c5582afc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582afc: 5066 90e8 
+
+  0x00001526c5582b00: ; ImmutableOopMap {[8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [72]=Oop [80]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::<init>@8 (line 202)
+                      ; - java.util.stream.ReferencePipeline::<init>@3 (line 96)
+                      ; - java.util.stream.ReferencePipeline$StatelessOp::<init>@3 (line 800)
+                      ; - java.util.stream.ReferencePipeline$7::<init>@16 (line 259)
+                      ; - java.util.stream.ReferencePipeline::flatMap@26 (line 258)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@16 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582b00: fcaa 58ff | be45 ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 | 204c 8b54 
+  0x00001526c5582b20: 2438 4c89 | 5424 304c | 8974 2448 | 4889 5c24 
+
+  0x00001526c5582b30: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582b30: 5066 90e8 
+
+  0x00001526c5582b34: ; ImmutableOopMap {[8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [72]=Oop [80]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::<init>@8 (line 202)
+                      ; - java.util.stream.IntPipeline::<init>@3 (line 91)
+                      ; - java.util.stream.IntPipeline$StatelessOp::<init>@3 (line 652)
+                      ; - java.util.stream.ReferencePipeline$4::<init>@16 (line 208)
+                      ; - java.util.stream.ReferencePipeline::mapToInt@22 (line 207)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@26 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582b34: c8aa 58ff | be45 ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 | 204c 8b54 
+  0x00001526c5582b54: 2438 4c89 | 5424 304c | 8944 2438 | 4889 4424 
+
+  0x00001526c5582b64: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582b64: 4066 90e8 
+
+  0x00001526c5582b68: ; ImmutableOopMap {[8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::evaluate@31 (line 228)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582b68: 94aa 58ff | be45 ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 | 204c 8b54 
+  0x00001526c5582b88: 2438 4c89 | 5424 304c | 8944 2438 | 4889 4424 
+
+  0x00001526c5582b98: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582b98: 4066 90e8 
+
+  0x00001526c5582b9c: ; ImmutableOopMap {[8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::evaluate@53 (line 232)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582b9c: 60aa 58ff | be45 ffff | ff48 8b6c | 2420 4c8b | 5c24 104c | 895c 2408 | 4c8b 5c24 | 184c 895c 
+  0x00001526c5582bbc: 2410 4c8b | 5c24 304c | 895c 2418 | 4c8b 5c24 | 284c 895c | 2420 4c8b | 5c24 384c | 895c 2428 
+  0x00001526c5582bdc: 4c8b 5c24 | 404c 895c | 2430 4c89 | 4c24 4089 | 4424 4844 | 8954 244c 
+
+  0x00001526c5582bf4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582bf4: 6666 90e8 
+
+  0x00001526c5582bf8: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [64]=Oop [76]=NarrowOop }
+                      ;*ifnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::sourceSpliterator@9 (line 400)
+                      ; - java.util.stream.AbstractPipeline::evaluate@85 (line 234)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582bf8: 04aa 58ff | be45 ffff | ff4c 8b5c | 2420 4c89 | 5c24 084c | 8b5c 2430 | 4c89 5c24 | 204c 8b5c 
+  0x00001526c5582c18: 2438 4c89 | 5c24 304c | 8b5c 2440 | 4c89 5c24 | 384c 894c | 2448 895c | 2450 4489 
+
+  0x00001526c5582c34: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582c34: 5424 54e8 
+
+  0x00001526c5582c38: ; ImmutableOopMap {[8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [56]=Oop [72]=Oop [84]=NarrowOop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::sourceSpliterator@82 (line 412)
+                      ; - java.util.stream.AbstractPipeline::evaluate@85 (line 234)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582c38: c4a9 58ff | be45 ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 | 204c 8b54 
+  0x00001526c5582c58: 2438 4c89 | 5424 3048 | 8944 2438 
+
+  0x00001526c5582c64: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582c64: 6666 90e8 
+
+  0x00001526c5582c68: ; ImmutableOopMap {[8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [56]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.OptionalInt::orElse@4 (line 220)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@37 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582c68: 94a9 58ff | be45 ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 | 204c 8b54 
+  0x00001526c5582c88: 2440 4c89 | 5424 304c | 8974 2450 | 4889 5c24 
+
+  0x00001526c5582c98: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582c98: 5866 90e8 
+
+  0x00001526c5582c9c: ; ImmutableOopMap {[8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [80]=Oop [88]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::<init>@8 (line 202)
+                      ; - java.util.stream.IntPipeline::<init>@3 (line 91)
+                      ; - java.util.stream.IntPipeline$StatelessOp::<init>@3 (line 652)
+                      ; - java.util.stream.ReferencePipeline$4::<init>@16 (line 208)
+                      ; - java.util.stream.ReferencePipeline::mapToInt@22 (line 207)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@52 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582c9c: 60a9 58ff | be45 ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 | 204c 8b54 
+  0x00001526c5582cbc: 2440 4c89 
+
+  0x00001526c5582cc0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582cc0: 5424 30e8 
+
+  0x00001526c5582cc4: ; ImmutableOopMap {[8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [72]=Oop [80]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::evaluate@31 (line 228)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582cc4: 38a9 58ff | be45 ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 | 204c 8b54 
+  0x00001526c5582ce4: 2440 4c89 
+
+  0x00001526c5582ce8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582ce8: 5424 30e8 
+
+  0x00001526c5582cec: ; ImmutableOopMap {[8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [72]=Oop [80]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::evaluate@53 (line 232)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582cec: 10a9 58ff | be45 ffff | ff48 8b6c | 2420 4c8b | 5424 104c | 8954 2408 | 4c8b 5424 | 184c 8954 
+  0x00001526c5582d0c: 2410 4c8b | 5424 304c | 8954 2418 | 4c8b 5424 | 404c 8954 | 2420 4c8b | 5424 384c | 8954 2430 
+  0x00001526c5582d2c: 4c8b 5424 | 484c 8954 | 2438 4c8b | 5424 504c | 8954 2448 | 8944 242c | 4489 6c24 
+
+  0x00001526c5582d48: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582d48: 5066 90e8 
+
+  0x00001526c5582d4c: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [72]=Oop [80]=NarrowOop }
+                      ;*ifnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::sourceSpliterator@9 (line 400)
+                      ; - java.util.stream.AbstractPipeline::evaluate@85 (line 234)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582d4c: b0a8 58ff | be45 ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 | 204c 8b54 
+  0x00001526c5582d6c: 2440 4c89 | 5424 304c | 8b54 2448 | 4c89 5424 | 4089 5c24 | 2c44 896c 
+
+  0x00001526c5582d84: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582d84: 2458 90e8 
+
+  0x00001526c5582d88: ; ImmutableOopMap {[8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [64]=Oop [80]=Oop [88]=NarrowOop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::sourceSpliterator@82 (line 412)
+                      ; - java.util.stream.AbstractPipeline::evaluate@85 (line 234)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582d88: 74a8 58ff | be45 ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 | 204c 8b54 
+  0x00001526c5582da8: 2440 4c89 | 5424 3048 | 8944 2440 
+
+  0x00001526c5582db4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582db4: 6666 90e8 
+
+  0x00001526c5582db8: ; ImmutableOopMap {[8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.OptionalInt::orElse@4 (line 220)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@63 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582db8: 44a8 58ff | c5f9 2ec0 | bdff ffff | ff0f 8a0e | 0000 000f | 8208 0000 | 0040 0f95 | c540 0fb6 
+  0x00001526c5582dd8: edbe 45ff | ffff 4c8b | 5c24 204c | 891c 244c | 8b5c 2418 | 4c89 5c24 | 10c5 fb11 | 4424 1844 
+  0x00001526c5582df8: 8954 2420 
+
+  0x00001526c5582dfc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582dfc: 6666 90e8 
+
+  0x00001526c5582e00: ; ImmutableOopMap {[0]=Oop [16]=Oop }
+                      ;*ifeq {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.lang.Double::isNaN@3 (line 663)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@7 (line 417)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582e00: fca7 58ff 
+
+  0x00001526c5582e04: ;   {section_word}
+  0x00001526c5582e04: c5f9 2e05 | 34cd ffff | bdff ffff | ff0f 8a0e | 0000 000f | 8208 0000 | 0040 0f95 | c540 0fb6 
+  0x00001526c5582e24: edbe 45ff | ffff 4c8b | 5c24 204c | 891c 244c | 8b5c 2418 | 4c89 5c24 | 10c5 fb11 | 4424 1844 
+  0x00001526c5582e44: 8954 2420 
+
+  0x00001526c5582e48: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582e48: 6666 90e8 
+
+  0x00001526c5582e4c: ; ImmutableOopMap {[0]=Oop [16]=Oop }
+                      ;*ifne {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@29 (line 420)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582e4c: b0a7 58ff | be45 ffff | ff4c 8b5c | 2420 4c89 | 1c24 4c8b | 5c24 184c | 895c 2410 | c5fb 1144 
+  0x00001526c5582e6c: 2418 4489 
+
+  0x00001526c5582e70: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582e70: 5424 20e8 
+
+  0x00001526c5582e74: ; ImmutableOopMap {[0]=Oop [16]=Oop }
+                      ;*ifne {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@46 (line 425)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582e74: 88a7 58ff | be45 ffff | ff4c 8b5c | 2420 4c89 | 1c24 4c8b | 5c24 184c | 895c 2410 | c5fb 1144 
+  0x00001526c5582e94: 2418 4489 
+
+  0x00001526c5582e98: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582e98: 5424 20e8 
+
+  0x00001526c5582e9c: ; ImmutableOopMap {[0]=Oop [16]=Oop }
+                      ;*if_icmpne {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@53 (line 427)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582e9c: 60a7 58ff | 498b f749 | ba90 4065 | da26 1500 | 0041 ffd2 | e915 d1ff | ffbe c6ff | ffff 488b 
+  0x00001526c5582ebc: 6c24 2044 | 8944 2408 | 4489 5424 | 2044 8954 | 2424 895c 
+
+  0x00001526c5582ed0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582ed0: 2428 90e8 
+
+  0x00001526c5582ed4: ; ImmutableOopMap {rbp=Oop [24]=Oop [40]=NarrowOop }
+                      ;*invokeinterface numberOfSamples {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleMatrix@5 (line 358)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@75 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582ed4: 28a7 58ff | bef6 ffff 
+
+  0x00001526c5582edc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582edc: ff66 90e8 
+
+  0x00001526c5582ee0: ; ImmutableOopMap {}
+                      ;*getfield comparator {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.TreeMap$KeySpliterator::getComparator@4 (line 3100)
+                      ; - java.util.stream.StreamOpFlag::fromCharacteristics@14 (line 751)
+                      ; - java.util.stream.StreamSupport::stream@11 (line 70)
+                      ; - java.util.Collection::stream@7 (line 743)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@6 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582ee0: 1ca7 58ff | bef6 ffff 
+
+  0x00001526c5582ee8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582ee8: ff66 90e8 
+
+  0x00001526c5582eec: ; ImmutableOopMap {}
+                      ;*getfield comparator {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.TreeMap$KeySpliterator::getComparator@4 (line 3100)
+                      ; - java.util.stream.StreamOpFlag::fromCharacteristics@14 (line 751)
+                      ; - java.util.stream.StreamSupport::stream@11 (line 70)
+                      ; - java.util.Collection::stream@7 (line 743)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@42 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582eec: 10a7 58ff | bec6 ffff | ff4c 8b54 | 2430 4c89 | 5424 204c | 8b54 2438 | 4c89 5424 | 3089 4424 
+  0x00001526c5582f0c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582f0c: 4866 90e8 
+
+  0x00001526c5582f10: ; ImmutableOopMap {rbp=Oop [0]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [64]=Oop }
+                      ;*invokeinterface getComparator {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.stream.StreamOpFlag::fromCharacteristics@14 (line 751)
+                      ; - java.util.stream.StreamSupport::stream@11 (line 70)
+                      ; - java.util.Collection::stream@7 (line 743)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@6 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582f10: eca6 58ff | bec6 ffff | ff4c 8b54 | 2430 4c89 | 5424 204c | 8b54 2440 | 4c89 5424 | 3089 4424 
+  0x00001526c5582f30: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582f30: 2c66 90e8 
+
+  0x00001526c5582f34: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop [72]=Oop }
+                      ;*invokeinterface getComparator {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.stream.StreamOpFlag::fromCharacteristics@14 (line 751)
+                      ; - java.util.stream.StreamSupport::stream@11 (line 70)
+                      ; - java.util.Collection::stream@7 (line 743)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@42 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582f34: c8a6 58ff | bede ffff | ff48 8b6c | 2420 4c8b | 5424 104c | 8954 2408 | 4c8b 5424 | 184c 8954 
+  0x00001526c5582f54: 2410 4c8b | 5424 304c | 8954 2418 | 4c8b 5424 | 284c 8954 | 2420 4889 
+
+  0x00001526c5582f6c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582f6c: 4424 30e8 
+
+  0x00001526c5582f70: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [48]=Oop [56]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.stream.IntPipeline::reduce@8 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582f70: 8ca6 58ff | bede ffff | ff48 8b6c | 2420 4c8b | 5424 104c | 8954 2408 | 4c8b 5424 | 184c 8954 
+  0x00001526c5582f90: 2410 4c8b | 5424 304c | 8954 2418 | 4c8b 5424 | 384c 8954 | 2430 4889 
+
+  0x00001526c5582fa8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582fa8: 4424 38e8 
+
+  0x00001526c5582fac: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [48]=Oop [56]=Oop [64]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.stream.IntPipeline::reduce@8 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582fac: 50a6 58ff | bede ffff | ff4c 8b4c | 2418 4c89 | 0c24 4489 | 4424 0844 | 8954 240c | 4c89 5c24 
+  0x00001526c5582fcc: 1889 5c24 
+
+  0x00001526c5582fd0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5582fd0: 2866 90e8 
+
+  0x00001526c5582fd4: ; ImmutableOopMap {[0]=Oop [24]=Oop [32]=Oop [40]=NarrowOop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleEvidence@10 (line 333)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::evidence@8 (line 1409)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@2 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5582fd4: 28a6 58ff | bede ffff | ff4c 8b44 | 2420 4c89 | 0424 4c8b | 4424 184c | 8944 2410 | c5fb 1144 
+  0x00001526c5582ff4: 2418 4489 | 5424 2044 | 894c 2424 | 4489 5c24 
+
+  0x00001526c5583004: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583004: 2866 90e8 
+
+  0x00001526c5583008: ; ImmutableOopMap {[0]=Oop [16]=Oop [36]=NarrowOop [40]=NarrowOop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@90 (line 433)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583008: f4a5 58ff | 4b8d 2cdc | eb24 4b8d | 2cc4 eb1b | 4b8d 2cc4 | eb15 4b8d | 2cd4 eb0f | 4b8d 2cd4 
+  0x00001526c5583028: 418b d1eb | 064b 8d2c | c433 d244 | 8bca bede | ffff ff4c | 8b54 2418 | 4c89 5424 | 084c 8b54 
+  0x00001526c5583048: 2420 4c89 | 5424 184c | 8b54 2428 | 4c89 5424 | 2048 894c | 2428 4489 
+
+  0x00001526c5583060: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583060: 4c24 30e8 
+
+  0x00001526c5583064: ; ImmutableOopMap {rbp=Oop [8]=Oop [24]=Oop [32]=Oop [40]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@30 (line 265)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583064: 98a5 58ff | 8b5c 2434 | bef6 ffff 
+
+  0x00001526c5583070: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583070: ff8b ebe8 
+
+  0x00001526c5583074: ; ImmutableOopMap {}
+                      ;*daload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoodsPerEvidence@48 (line 453)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@119 (line 435)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583074: 88a5 58ff | bef6 ffff 
+
+  0x00001526c558307c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558307c: ff66 90e8 
+
+  0x00001526c5583080: ; ImmutableOopMap {}
+                      ;*getfield likelihood {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoodsPerEvidence@14 (line 447)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@119 (line 435)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583080: 7ca5 58ff | bef6 ffff 
+
+  0x00001526c5583088: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583088: ff66 90e8 
+
+  0x00001526c558308c: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoodsPerEvidence@25 (line 449)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@119 (line 435)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c558308c: 70a5 58ff | bef6 ffff 
+
+  0x00001526c5583094: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583094: ff66 90e8 
+
+  0x00001526c5583098: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoodsPerEvidence@25 (line 449)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@119 (line 435)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583098: 64a5 58ff | bef6 ffff 
+
+  0x00001526c55830a0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55830a0: ff66 90e8 
+
+  0x00001526c55830a4: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoodsPerEvidence@25 (line 449)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@119 (line 435)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55830a4: 58a5 58ff | bef6 ffff 
+
+  0x00001526c55830ac: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55830ac: ff66 90e8 
+
+  0x00001526c55830b0: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfSamples {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleMatrix@5 (line 358)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@75 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55830b0: 4ca5 58ff | bef6 ffff | ff41 8bea 
+
+  0x00001526c55830bc: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55830bc: 6666 90e8 
+
+  0x00001526c55830c0: ; ImmutableOopMap {}
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleMatrix@19 (line 359)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@75 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55830c0: 3ca5 58ff | bef6 ffff 
+
+  0x00001526c55830c8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55830c8: ff8b ebe8 
+
+  0x00001526c55830cc: ; ImmutableOopMap {}
+                      ;*invokevirtual sampleEvidence {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::evidence@8 (line 1409)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@2 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55830cc: 30a5 58ff | bef6 ffff 
+
+  0x00001526c55830d4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55830d4: ff8b ebe8 
+
+  0x00001526c55830d8: ; ImmutableOopMap {}
+                      ;*invokeinterface get {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleEvidence@5 (line 333)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::evidence@8 (line 1409)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@2 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55830d8: 24a5 58ff | bef6 ffff 
+
+  0x00001526c55830e0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55830e0: ff8b ebe8 
+
+  0x00001526c55830e4: ; ImmutableOopMap {}
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList::elementData@5 (line 411)
+                      ; - java.util.ArrayList::get@11 (line 428)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleEvidence@5 (line 333)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::evidence@8 (line 1409)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@2 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55830e4: 18a5 58ff | bef4 ffff | ff4c 8b4c | 2418 4c89 | 0c24 4489 | 4424 0844 | 8954 240c | 4c89 5c24 
+  0x00001526c5583104: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583104: 1866 90e8 
+
+  0x00001526c5583108: ; ImmutableOopMap {[0]=Oop [24]=Oop [32]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleEvidence@10 (line 333)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods$SampleMatrix::evidence@8 (line 1409)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@2 (line 262)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583108: f4a4 58ff | bef6 ffff 
+
+  0x00001526c5583110: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583110: ff66 90e8 
+
+  0x00001526c5583114: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@15 (line 264)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583114: e8a4 58ff | bef6 ffff | ff48 8b6c | 2428 4889 | 0c24 4489 
+
+  0x00001526c5583128: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583128: 5c24 08e8 
+
+  0x00001526c558312c: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=NarrowOop }
+                      ;*invokevirtual computeLog10Likelihoods {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@128 (line 272)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c558312c: d0a4 58ff | 418b d1eb | 0733 d2eb | 0341 8bd1 | bef4 ffff | ff48 8b6c | 2420 4c8b | 5424 184c 
+  0x00001526c558314c: 8914 2444 | 8b5c 2410 | 4489 5c24 | 0844 8b54 | 2414 4489 | 5424 0c4c | 8b54 2428 | 4c89 5424 
+  0x00001526c558316c: 1848 894c | 2420 8954 
+
+  0x00001526c5583174: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583174: 2428 90e8 
+
+  0x00001526c5583178: ; ImmutableOopMap {rbp=Oop [0]=Oop [24]=Oop [32]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@30 (line 265)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@78 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583178: 84a4 58ff | bef6 ffff 
+
+  0x00001526c5583180: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583180: ff66 90e8 
+
+  0x00001526c5583184: ; ImmutableOopMap {}
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@76 (line 432)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583184: 78a4 58ff | bef6 ffff 
+
+  0x00001526c558318c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558318c: ff66 90e8 
+
+  0x00001526c5583190: ; ImmutableOopMap {}
+                      ;*invokeinterface get {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@85 (line 433)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583190: 6ca4 58ff | bef6 ffff 
+
+  0x00001526c5583198: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583198: ff66 90e8 
+
+  0x00001526c558319c: ; ImmutableOopMap {}
+                      ;*aaload {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.ArrayList::elementData@5 (line 411)
+                      ; - java.util.ArrayList::get@11 (line 428)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@85 (line 433)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c558319c: 60a4 58ff | bef4 ffff | ff4c 8b5c | 2420 4c89 | 1c24 4c8b | 5c24 184c | 895c 2410 | c5fb 1144 
+  0x00001526c55831bc: 2418 4489 | 5424 2044 | 894c 2424 
+
+  0x00001526c55831c8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55831c8: 6666 90e8 
+
+  0x00001526c55831cc: ; ImmutableOopMap {[0]=Oop [16]=Oop [36]=NarrowOop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@90 (line 433)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55831cc: 30a4 58ff | bef6 ffff 
+
+  0x00001526c55831d4: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55831d4: ff66 90e8 
+
+  0x00001526c55831d8: ; ImmutableOopMap {}
+                      ;*arraylength {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@66 (line 431)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55831d8: 24a4 58ff | bef6 ffff 
+
+  0x00001526c55831e0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55831e0: ff66 90e8 
+
+  0x00001526c55831e4: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedSampleList::numberOfSamples@4 (line 61)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleMatrix@5 (line 358)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@75 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55831e4: 18a4 58ff | bef6 ffff 
+
+  0x00001526c55831ec: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55831ec: ff66 90e8 
+
+  0x00001526c55831f0: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedSampleList::numberOfSamples@4 (line 61)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::sampleMatrix@5 (line 358)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@75 (line 197)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55831f0: 0ca4 58ff | bef4 ffff | ff48 8b6c | 2420 4c8b | 5c24 084c | 891c 244c | 8b5c 2410 | 4c89 5c24 
+  0x00001526c5583210: 088b 4c24 | 1889 4c24 | 1044 894c | 2414 4c89 | 4424 2844 | 8954 2438 
+
+  0x00001526c5583228: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583228: 6666 90e8 
+
+  0x00001526c558322c: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [40]=Oop [48]=Oop }
+                      ;*aastore {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.LinkedHashMap::keysToArray@25 (line 545)
+                      ; - java.util.HashSet::toArray@12 (line 373)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.AssemblyResultSet::getHaplotypeList@16 (line 430)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@8 (line 175)
+  0x00001526c558322c: d0a3 58ff | bef6 ffff 
+
+  0x00001526c5583234: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583234: ff66 90e8 
+
+  0x00001526c5583238: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.AssemblyResultSet::getHaplotypeList@8 (line 430)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@8 (line 175)
+  0x00001526c5583238: c4a3 58ff | bef6 ffff 
+
+  0x00001526c5583240: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583240: ff66 90e8 
+
+  0x00001526c5583244: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.HashSet::size@4 (line 183)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.AssemblyResultSet::getHaplotypeList@8 (line 430)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@8 (line 175)
+  0x00001526c5583244: b8a3 58ff | bef6 ffff 
+
+  0x00001526c558324c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558324c: ff66 90e8 
+
+  0x00001526c5583250: ; ImmutableOopMap {}
+                      ;*getfield parallel {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::isParallel@4 (line 373)
+                      ; - java.util.stream.AbstractPipeline::evaluate@50 (line 232)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583250: aca3 58ff | bef6 ffff 
+
+  0x00001526c5583258: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583258: ff66 90e8 
+
+  0x00001526c558325c: ; ImmutableOopMap {}
+                      ;*getfield sourceSpliterator {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::sourceSpliterator@6 (line 400)
+                      ; - java.util.stream.AbstractPipeline::evaluate@85 (line 234)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c558325c: a0a3 58ff | bef4 ffff | ff48 8b6c | 2420 4c8b | 5424 104c | 8954 2408 | 4c8b 5424 | 184c 8954 
+  0x00001526c558327c: 2410 4c8b | 5424 284c | 8954 2420 
+
+  0x00001526c5583288: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583288: 6666 90e8 
+
+  0x00001526c558328c: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [32]=Oop [48]=Oop [56]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.stream.IntPipeline::reduce@8 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@31 (line 253)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c558328c: 70a3 58ff | bef6 ffff 
+
+  0x00001526c5583294: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583294: ff66 90e8 
+
+  0x00001526c5583298: ; ImmutableOopMap {}
+                      ;*getfield parallel {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::isParallel@4 (line 373)
+                      ; - java.util.stream.AbstractPipeline::evaluate@50 (line 232)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583298: 64a3 58ff | bef6 ffff 
+
+  0x00001526c55832a0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55832a0: ff66 90e8 
+
+  0x00001526c55832a4: ; ImmutableOopMap {}
+                      ;*getfield sourceSpliterator {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.stream.AbstractPipeline::sourceSpliterator@6 (line 400)
+                      ; - java.util.stream.AbstractPipeline::evaluate@85 (line 234)
+                      ; - java.util.stream.IntPipeline::reduce@5 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55832a4: 58a3 58ff | bef4 ffff | ff48 8b6c | 2420 4c8b | 5424 104c | 8954 2408 | 4c8b 5424 | 184c 8954 
+  0x00001526c55832c4: 2410 4c8b | 5424 304c | 8954 2418 
+
+  0x00001526c55832d0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55832d0: 6666 90e8 
+
+  0x00001526c55832d4: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [24]=Oop [56]=Oop [64]=Oop }
+                      ;*checkcast {reexecute=0 rethrow=0 return_oop=0}
+                      ; - java.util.stream.IntPipeline::reduce@8 (line 520)
+                      ; - java.util.stream.IntPipeline::max@6 (line 483)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@57 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55832d4: 28a3 58ff | bef6 ffff | ff44 894c 
+
+  0x00001526c55832e0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55832e0: 240c 90e8 
+
+  0x00001526c55832e4: ; ImmutableOopMap {[56]=Oop [64]=Oop }
+                      ;*invokevirtual initialize {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@77 (line 257)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55832e4: 18a3 58ff | bef6 ffff 
+
+  0x00001526c55832ec: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55832ec: ff66 90e8 
+
+  0x00001526c55832f0: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfSamples {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::numberOfSamples@4 (line 271)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@55 (line 195)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55832f0: 0ca3 58ff | bef6 ffff 
+
+  0x00001526c55832f8: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55832f8: ff66 90e8 
+
+  0x00001526c55832fc: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedSampleList::numberOfSamples@4 (line 61)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::numberOfSamples@4 (line 271)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@55 (line 195)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55832fc: 00a3 58ff | bef6 ffff 
+
+  0x00001526c5583304: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583304: ff66 90e8 
+
+  0x00001526c5583308: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedSampleList::numberOfSamples@4 (line 61)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::numberOfSamples@4 (line 271)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@55 (line 195)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583308: f4a2 58ff | bef6 ffff 
+
+  0x00001526c5583310: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583310: ff66 90e8 
+
+  0x00001526c5583314: ; ImmutableOopMap {}
+                      ;*invokeinterface numberOfAlleles {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@37 (line 424)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583314: e8a2 58ff | bef6 ffff 
+
+  0x00001526c558331c: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c558331c: ff66 90e8 
+
+  0x00001526c5583320: ; ImmutableOopMap {}
+                      ;*invokevirtual size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@37 (line 424)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583320: dca2 58ff | bef6 ffff 
+
+  0x00001526c5583328: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583328: ff66 90e8 
+
+  0x00001526c558332c: ; ImmutableOopMap {}
+                      ;*invokeinterface size {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.collections.IndexedSet::size@4 (line 139)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.IndexedAlleleList::numberOfAlleles@4 (line 62)
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@37 (line 424)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c558332c: d0a2 58ff | bef6 ffff 
+
+  0x00001526c5583334: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583334: ff66 90e8 
+
+  0x00001526c5583338: ; ImmutableOopMap {}
+                      ;*arraylength {reexecute=0 rethrow=0 return_oop=0}
+                      ; - org.broadinstitute.hellbender.utils.genotyper.AlleleLikelihoods::normalizeLikelihoods@66 (line 431)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@97 (line 200)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583338: c4a2 58ff | be45 ffff | ff48 8b6c | 2420 4889 | 5424 2048 | 8954 2428 
+
+  0x00001526c5583350: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583350: 6666 90e8 
+
+  0x00001526c5583354: ; ImmutableOopMap {rbp=Oop [8]=Oop [16]=Oop [32]=Oop [40]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::nonNull@1 (line 642)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@3 (line 174)
+  0x00001526c5583354: a8a2 58ff | be45 ffff | ff48 8b6c | 2420 4c89 
+
+  0x00001526c5583364: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c5583364: 0424 90e8 
+
+  0x00001526c5583368: ; ImmutableOopMap {rbp=Oop [0]=Oop [8]=Oop [16]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) org.broadinstitute.hellbender.utils.Utils::nonNull@1 (line 642)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@11 (line 186)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c5583368: 94a2 58ff | be45 ffff | ff4c 8b54 | 2420 4c89 | 5424 084c | 8b54 2430 | 4c89 5424 | 204c 8b54 
+  0x00001526c5583388: 2440 4c89 | 5424 284c | 8b54 2438 | 4c89 5424 | 3044 8944 | 2438 4c89 
+
+  0x00001526c55833a0: ;   {runtime_call UncommonTrapBlob}
+  0x00001526c55833a0: 6c24 48e8 
+
+  0x00001526c55833a4: ; ImmutableOopMap {rbp=NarrowOop [8]=Oop [16]=Oop [24]=Oop [32]=Oop [40]=Oop [48]=Oop [72]=Oop }
+                      ;*ifnonnull {reexecute=1 rethrow=0 return_oop=0}
+                      ; - (reexecute) java.util.Objects::requireNonNull@1 (line 208)
+                      ; - java.util.Spliterators::spliterator@5 (line 142)
+                      ; - java.util.Arrays$ArrayList::spliterator@6 (line 4197)
+                      ; - java.util.Collection::stream@1 (line 743)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::initializePairHMM@42 (line 254)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@36 (line 191)
+                      ; - org.broadinstitute.hellbender.tools.walkers.haplotypecaller.PairHMMLikelihoodCalculationEngine::computeReadLikelihoods@21 (line 177)
+  0x00001526c55833a4: 58a2 58ff | eb3b eb39 | eb37 eb35 | eb33 eb31 | eb2f eb2d | eb2b eb29 | eb27 eb25 | eb23 eb21 
+  0x00001526c55833c4: eb1f eb00 | 488b f0eb | 1beb 16eb | 14eb 12eb | 10eb 0eeb | 0ceb 0aeb | 08eb 06eb | 04eb 02eb 
+  0x00001526c55833e4: 0048 8bf0 | 4883 c470 
+
+  0x00001526c55833ec: ;   {runtime_call _rethrow_Java}
+  0x00001526c55833ec: 5de9 8e27 
+
+  0x00001526c55833f0: ;   {internal_word}
+  0x00001526c55833f0: 63ff 49ba | ba0f 58c5 | 2615 0000 | 4d89 9760 
+
+  0x00001526c5583400: ;   {runtime_call SafepointBlob}
+  0x00001526c5583400: 0300 00e9 | f8b2 58ff | f4f4 f4f4 | f4f4 f4f4 | f4f4 f4f4 | f4f4 f4f4 | f4f4 f4f4 | f4f4 f4f4 
+[Stub Code]
+  0x00001526c5583420: ;   {no_reloc}
+  0x00001526c5583420: 48bb 0000 | 0000 0000 
+
+  0x00001526c5583428: ;   {runtime_call}
+  0x00001526c5583428: 0000 e9fb 
+
+  0x00001526c558342c: ;   {static_stub}
+  0x00001526c558342c: ffff ff48 | bb00 0000 | 0000 0000 
+
+  0x00001526c5583438: ;   {runtime_call}
+  0x00001526c5583438: 00e9 fbff 
+
+  0x00001526c558343c: ;   {static_stub}
+  0x00001526c558343c: ffff 48bb | 0000 0000 | 0000 0000 
+
+  0x00001526c5583448: ;   {runtime_call}
+  0x00001526c5583448: e9fb ffff 
+
+  0x00001526c558344c: ;   {static_stub}
+  0x00001526c558344c: ff48 bb00 | 0000 0000 
+
+  0x00001526c5583454: ;   {runtime_call}
+  0x00001526c5583454: 0000 00e9 | fbff ffff 
+
+  0x00001526c558345c: ;   {static_stub}
+  0x00001526c558345c: 48bb 0000 | 0000 0000 
+
+  0x00001526c5583464: ;   {runtime_call}
+  0x00001526c5583464: 0000 e9fb 
+
+  0x00001526c5583468: ;   {static_stub}
+  0x00001526c5583468: ffff ff48 | bb00 0000 | 0000 0000 
+
+  0x00001526c5583474: ;   {runtime_call}
+  0x00001526c5583474: 00e9 fbff 
+
+  0x00001526c5583478: ;   {static_stub}
+  0x00001526c5583478: ffff 48bb | 0000 0000 | 0000 0000 
+
+  0x00001526c5583484: ;   {runtime_call}
+  0x00001526c5583484: e9fb ffff 
+
+  0x00001526c5583488: ;   {runtime_call ExceptionBlob}
+  0x00001526c5583488: ffe9 f296 | 62ff e800 | 0000 0048 | 832c 2405 
+
+  0x00001526c5583498: ;   {runtime_call DeoptimizationBlob}
+  0x00001526c5583498: e903 a558 | fff4 f4f4 
+[/MachCode]
+
+
+---------------  P R O C E S S  ---------------
+
+Threads class SMR info:
+_java_thread_list=0x00001525ec45de60, length=11, elements={
+0x00001526d4016db0, 0x00001526d41c50c0, 0x00001526d41c64b0, 0x00001526d41cade0,
+0x00001526d41cc1a0, 0x00001526d41cd5c0, 0x00001526d41cef80, 0x00001526d41d04c0,
+0x00001526d41d1940, 0x00001526d41d9110, 0x00001526d41dcd60
+}
+
+Java Threads: ( => current thread )
+=>0x00001526d4016db0 JavaThread "main" [_thread_in_native, id=4007521, stack(0x00001526d9b3d000,0x00001526d9c3d000)]
+  0x00001526d41c50c0 JavaThread "Reference Handler" daemon [_thread_blocked, id=4007528, stack(0x000015267d17f000,0x000015267d27f000)]
+  0x00001526d41c64b0 JavaThread "Finalizer" daemon [_thread_blocked, id=4007529, stack(0x000015267d07e000,0x000015267d17e000)]
+  0x00001526d41cade0 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=4007530, stack(0x000015267cf7d000,0x000015267d07d000)]
+  0x00001526d41cc1a0 JavaThread "Service Thread" daemon [_thread_blocked, id=4007531, stack(0x000015267ce7c000,0x000015267cf7c000)]
+  0x00001526d41cd5c0 JavaThread "Monitor Deflation Thread" daemon [_thread_blocked, id=4007532, stack(0x000015267cd7b000,0x000015267ce7b000)]
+  0x00001526d41cef80 JavaThread "C2 CompilerThread0" daemon [_thread_blocked, id=4007533, stack(0x000015267cc7a000,0x000015267cd7a000)]
+  0x00001526d41d04c0 JavaThread "C1 CompilerThread0" daemon [_thread_blocked, id=4007534, stack(0x000015267cb79000,0x000015267cc79000)]
+  0x00001526d41d1940 JavaThread "Sweeper thread" daemon [_thread_blocked, id=4007535, stack(0x000015267ca78000,0x000015267cb78000)]
+  0x00001526d41d9110 JavaThread "Notification Thread" daemon [_thread_blocked, id=4007536, stack(0x000015267c977000,0x000015267ca77000)]
+  0x00001526d41dcd60 JavaThread "Common-Cleaner" daemon [_thread_blocked, id=4007538, stack(0x000015267c775000,0x000015267c875000)]
+
+Other Threads:
+  0x00001526d41c1130 VMThread "VM Thread" [stack: 0x000015267d280000,0x000015267d380000] [id=4007527]
+  0x00001526d41dae50 WatcherThread [stack: 0x000015267c876000,0x000015267c976000] [id=4007537]
+  0x00001526d40480c0 GCTaskThread "GC Thread#0" [stack: 0x00001526d8e64000,0x00001526d8f64000] [id=4007522]
+  0x0000152618005cf0 GCTaskThread "GC Thread#1" [stack: 0x000015267c573000,0x000015267c673000] [id=4007541]
+  0x0000152618006680 GCTaskThread "GC Thread#2" [stack: 0x000015267c472000,0x000015267c572000] [id=4007542]
+  0x0000152618007090 GCTaskThread "GC Thread#3" [stack: 0x000015267c371000,0x000015267c471000] [id=4007543]
+  0x0000152618007aa0 GCTaskThread "GC Thread#4" [stack: 0x000015267c270000,0x000015267c370000] [id=4007544]
+  0x00001526180084b0 GCTaskThread "GC Thread#5" [stack: 0x000015267c16f000,0x000015267c26f000] [id=4007545]
+  0x0000152618008ef0 GCTaskThread "GC Thread#6" [stack: 0x000015267c06e000,0x000015267c16e000] [id=4007546]
+  0x0000152618009970 GCTaskThread "GC Thread#7" [stack: 0x000015266df00000,0x000015266e000000] [id=4007547]
+  0x00001526d4056ed0 ConcurrentGCThread "G1 Main Marker" [stack: 0x00001526d8d63000,0x00001526d8e63000] [id=4007523]
+  0x00001526d4057e40 ConcurrentGCThread "G1 Conc#0" [stack: 0x00001526d8c62000,0x00001526d8d62000] [id=4007524]
+  0x0000152670000ea0 ConcurrentGCThread "G1 Conc#1" [stack: 0x000015266ddff000,0x000015266deff000] [id=4007548]
+  0x00001526d4190260 ConcurrentGCThread "G1 Refine#0" [stack: 0x00001526d8359000,0x00001526d8459000] [id=4007525]
+  0x00001526d4191160 ConcurrentGCThread "G1 Service" [stack: 0x00001526d8258000,0x00001526d8358000] [id=4007526]
+
+Threads with active compile tasks:
+
+VM state: not at safepoint (normal execution)
+
+VM Mutex/Monitor currently owned by a thread: None
+
+Heap address: 0x0000000140000000, size: 27648 MB, Compressed Oops mode: Zero based, Oop shift amount: 3
+
+CDS archive(s) mapped at: [0x000015261f000000-0x000015261fbc4000-0x000015261fbc4000), size 12337152, SharedBaseAddress: 0x000015261f000000, ArchiveRelocationMode: 1.
+Compressed class space mapped at: 0x0000152620000000-0x0000152660000000, reserved size: 1073741824
+Narrow klass base: 0x000015261f000000, Narrow klass shift: 0, Narrow klass range: 0x100000000
+
+GC Precious Log:
+ CPUs: 48 total, 8 available
+ Memory: 251G
+ Large Page Support: Disabled
+ NUMA Support: Disabled
+ Compressed Oops: Enabled (Zero based)
+ Heap Region Size: 16M
+ Heap Min Capacity: 16M
+ Heap Initial Capacity: 2G
+ Heap Max Capacity: 27G
+ Pre-touch: Disabled
+ Parallel Workers: 8
+ Concurrent Workers: 2
+ Concurrent Refinement Workers: 8
+ Periodic GC: Disabled
+
+Heap:
+ garbage-first heap   total 1196032K, used 616319K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 27 young (442368K), 1 survivors (16384K)
+ Metaspace       used 49344K, committed 49728K, reserved 1114112K
+  class space    used 6249K, committed 6464K, reserved 1048576K
+
+Heap Regions: E=young(eden), S=young(survivor), O=old, HS=humongous(starts), HC=humongous(continues), CS=collection set, F=free, OA=open archive, CA=closed archive, TAMS=top-at-mark-start (previous, next)
+|   0|0x0000000140000000, 0x0000000141000000, 0x0000000141000000|100%| O|  |TAMS 0x0000000140000000, 0x0000000140000000| Untracked 
+|   1|0x0000000141000000, 0x0000000142000000, 0x0000000142000000|100%|HS|  |TAMS 0x0000000142000000, 0x0000000141000000| Complete 
+|   2|0x0000000142000000, 0x0000000143000000, 0x0000000143000000|100%| O|  |TAMS 0x0000000142000000, 0x0000000142000000| Untracked 
+|   3|0x0000000143000000, 0x0000000144000000, 0x0000000144000000|100%| O|  |TAMS 0x0000000143000000, 0x0000000143000000| Untracked 
+|   4|0x0000000144000000, 0x0000000145000000, 0x0000000145000000|100%| O|  |TAMS 0x0000000144000000, 0x0000000144000000| Untracked 
+|   5|0x0000000145000000, 0x0000000146000000, 0x0000000146000000|100%| O|  |TAMS 0x0000000145000000, 0x0000000145000000| Untracked 
+|   6|0x0000000146000000, 0x0000000147000000, 0x0000000147000000|100%| O|  |TAMS 0x0000000146000000, 0x0000000146000000| Untracked 
+|   7|0x0000000147000000, 0x0000000148000000, 0x0000000148000000|100%| O|  |TAMS 0x0000000147000000, 0x0000000147000000| Untracked 
+|   8|0x0000000148000000, 0x0000000149000000, 0x0000000149000000|100%| O|  |TAMS 0x0000000148000000, 0x0000000148000000| Untracked 
+|   9|0x0000000149000000, 0x000000014a000000, 0x000000014a000000|100%| O|  |TAMS 0x0000000149000000, 0x0000000149000000| Untracked 
+|  10|0x000000014a000000, 0x000000014b000000, 0x000000014b000000|100%| O|  |TAMS 0x000000014a000000, 0x000000014a000000| Untracked 
+|  11|0x000000014b000000, 0x000000014b51ae00, 0x000000014c000000| 31%| O|  |TAMS 0x000000014b000000, 0x000000014b000000| Untracked 
+|  12|0x000000014c000000, 0x000000014c000000, 0x000000014d000000|  0%| F|  |TAMS 0x000000014c000000, 0x000000014c000000| Untracked 
+|  13|0x000000014d000000, 0x000000014d000000, 0x000000014e000000|  0%| F|  |TAMS 0x000000014d000000, 0x000000014d000000| Untracked 
+|  14|0x000000014e000000, 0x000000014e000000, 0x000000014f000000|  0%| F|  |TAMS 0x000000014e000000, 0x000000014e000000| Untracked 
+|  15|0x000000014f000000, 0x000000014f000000, 0x0000000150000000|  0%| F|  |TAMS 0x000000014f000000, 0x000000014f000000| Untracked 
+|  16|0x0000000150000000, 0x0000000150000000, 0x0000000151000000|  0%| F|  |TAMS 0x0000000150000000, 0x0000000150000000| Untracked 
+|  17|0x0000000151000000, 0x0000000151000000, 0x0000000152000000|  0%| F|  |TAMS 0x0000000151000000, 0x0000000151000000| Untracked 
+|  18|0x0000000152000000, 0x0000000152000000, 0x0000000153000000|  0%| F|  |TAMS 0x0000000152000000, 0x0000000152000000| Untracked 
+|  19|0x0000000153000000, 0x0000000153000000, 0x0000000154000000|  0%| F|  |TAMS 0x0000000153000000, 0x0000000153000000| Untracked 
+|  20|0x0000000154000000, 0x0000000154000000, 0x0000000155000000|  0%| F|  |TAMS 0x0000000154000000, 0x0000000154000000| Untracked 
+|  21|0x0000000155000000, 0x0000000155000000, 0x0000000156000000|  0%| F|  |TAMS 0x0000000155000000, 0x0000000155000000| Untracked 
+|  22|0x0000000156000000, 0x0000000156000000, 0x0000000157000000|  0%| F|  |TAMS 0x0000000156000000, 0x0000000156000000| Untracked 
+|  23|0x0000000157000000, 0x0000000157000000, 0x0000000158000000|  0%| F|  |TAMS 0x0000000157000000, 0x0000000157000000| Untracked 
+|  24|0x0000000158000000, 0x0000000158000000, 0x0000000159000000|  0%| F|  |TAMS 0x0000000158000000, 0x0000000158000000| Untracked 
+|  25|0x0000000159000000, 0x0000000159000000, 0x000000015a000000|  0%| F|  |TAMS 0x0000000159000000, 0x0000000159000000| Untracked 
+|  26|0x000000015a000000, 0x000000015a000000, 0x000000015b000000|  0%| F|  |TAMS 0x000000015a000000, 0x000000015a000000| Untracked 
+|  27|0x000000015b000000, 0x000000015b000000, 0x000000015c000000|  0%| F|  |TAMS 0x000000015b000000, 0x000000015b000000| Untracked 
+|  28|0x000000015c000000, 0x000000015c4d8e30, 0x000000015d000000| 30%| S|CS|TAMS 0x000000015c000000, 0x000000015c000000| Complete 
+|  29|0x000000015d000000, 0x000000015d000000, 0x000000015e000000|  0%| F|  |TAMS 0x000000015d000000, 0x000000015d000000| Untracked 
+|  30|0x000000015e000000, 0x000000015e000000, 0x000000015f000000|  0%| F|  |TAMS 0x000000015e000000, 0x000000015e000000| Untracked 
+|  31|0x000000015f000000, 0x000000015f000000, 0x0000000160000000|  0%| F|  |TAMS 0x000000015f000000, 0x000000015f000000| Untracked 
+|  32|0x0000000160000000, 0x0000000160000000, 0x0000000161000000|  0%| F|  |TAMS 0x0000000160000000, 0x0000000160000000| Untracked 
+|  33|0x0000000161000000, 0x0000000161000000, 0x0000000162000000|  0%| F|  |TAMS 0x0000000161000000, 0x0000000161000000| Untracked 
+|  34|0x0000000162000000, 0x0000000162000000, 0x0000000163000000|  0%| F|  |TAMS 0x0000000162000000, 0x0000000162000000| Untracked 
+|  35|0x0000000163000000, 0x0000000163000000, 0x0000000164000000|  0%| F|  |TAMS 0x0000000163000000, 0x0000000163000000| Untracked 
+|  36|0x0000000164000000, 0x0000000164000000, 0x0000000165000000|  0%| F|  |TAMS 0x0000000164000000, 0x0000000164000000| Untracked 
+|  37|0x0000000165000000, 0x0000000165000000, 0x0000000166000000|  0%| F|  |TAMS 0x0000000165000000, 0x0000000165000000| Untracked 
+|  38|0x0000000166000000, 0x0000000166000000, 0x0000000167000000|  0%| F|  |TAMS 0x0000000166000000, 0x0000000166000000| Untracked 
+|  39|0x0000000167000000, 0x0000000167000000, 0x0000000168000000|  0%| F|  |TAMS 0x0000000167000000, 0x0000000167000000| Untracked 
+|  40|0x0000000168000000, 0x0000000168000000, 0x0000000169000000|  0%| F|  |TAMS 0x0000000168000000, 0x0000000168000000| Untracked 
+|  41|0x0000000169000000, 0x0000000169000000, 0x000000016a000000|  0%| F|  |TAMS 0x0000000169000000, 0x0000000169000000| Untracked 
+|  42|0x000000016a000000, 0x000000016a000000, 0x000000016b000000|  0%| F|  |TAMS 0x000000016a000000, 0x000000016a000000| Untracked 
+|  43|0x000000016b000000, 0x000000016b000000, 0x000000016c000000|  0%| F|  |TAMS 0x000000016b000000, 0x000000016b000000| Untracked 
+|  44|0x000000016c000000, 0x000000016c000000, 0x000000016d000000|  0%| F|  |TAMS 0x000000016c000000, 0x000000016c000000| Untracked 
+|  45|0x000000016d000000, 0x000000016d8031e8, 0x000000016e000000| 50%| E|  |TAMS 0x000000016d000000, 0x000000016d000000| Complete 
+|  46|0x000000016e000000, 0x000000016f000000, 0x000000016f000000|100%| E|CS|TAMS 0x000000016e000000, 0x000000016e000000| Complete 
+|  47|0x000000016f000000, 0x0000000170000000, 0x0000000170000000|100%| E|CS|TAMS 0x000000016f000000, 0x000000016f000000| Complete 
+|  48|0x0000000170000000, 0x0000000171000000, 0x0000000171000000|100%| E|CS|TAMS 0x0000000170000000, 0x0000000170000000| Complete 
+|  49|0x0000000171000000, 0x0000000172000000, 0x0000000172000000|100%| E|CS|TAMS 0x0000000171000000, 0x0000000171000000| Complete 
+|  50|0x0000000172000000, 0x0000000173000000, 0x0000000173000000|100%| E|CS|TAMS 0x0000000172000000, 0x0000000172000000| Complete 
+|  51|0x0000000173000000, 0x0000000174000000, 0x0000000174000000|100%| E|CS|TAMS 0x0000000173000000, 0x0000000173000000| Complete 
+|  52|0x0000000174000000, 0x0000000175000000, 0x0000000175000000|100%| E|CS|TAMS 0x0000000174000000, 0x0000000174000000| Complete 
+|  53|0x0000000175000000, 0x0000000176000000, 0x0000000176000000|100%| E|CS|TAMS 0x0000000175000000, 0x0000000175000000| Complete 
+|  54|0x0000000176000000, 0x0000000177000000, 0x0000000177000000|100%| E|CS|TAMS 0x0000000176000000, 0x0000000176000000| Complete 
+|  55|0x0000000177000000, 0x0000000178000000, 0x0000000178000000|100%| E|CS|TAMS 0x0000000177000000, 0x0000000177000000| Complete 
+|  56|0x0000000178000000, 0x0000000179000000, 0x0000000179000000|100%| E|CS|TAMS 0x0000000178000000, 0x0000000178000000| Complete 
+|  57|0x0000000179000000, 0x000000017a000000, 0x000000017a000000|100%| E|CS|TAMS 0x0000000179000000, 0x0000000179000000| Complete 
+|  58|0x000000017a000000, 0x000000017b000000, 0x000000017b000000|100%| E|CS|TAMS 0x000000017a000000, 0x000000017a000000| Complete 
+|  59|0x000000017b000000, 0x000000017c000000, 0x000000017c000000|100%| E|CS|TAMS 0x000000017b000000, 0x000000017b000000| Complete 
+|  60|0x000000017c000000, 0x000000017d000000, 0x000000017d000000|100%| E|CS|TAMS 0x000000017c000000, 0x000000017c000000| Complete 
+|  61|0x000000017d000000, 0x000000017e000000, 0x000000017e000000|100%| E|CS|TAMS 0x000000017d000000, 0x000000017d000000| Complete 
+|  62|0x000000017e000000, 0x000000017f000000, 0x000000017f000000|100%| E|CS|TAMS 0x000000017e000000, 0x000000017e000000| Complete 
+|  63|0x000000017f000000, 0x0000000180000000, 0x0000000180000000|100%| E|CS|TAMS 0x000000017f000000, 0x000000017f000000| Complete 
+|  64|0x0000000180000000, 0x0000000181000000, 0x0000000181000000|100%| E|CS|TAMS 0x0000000180000000, 0x0000000180000000| Complete 
+|  65|0x0000000181000000, 0x0000000182000000, 0x0000000182000000|100%| E|CS|TAMS 0x0000000181000000, 0x0000000181000000| Complete 
+|  66|0x0000000182000000, 0x0000000183000000, 0x0000000183000000|100%| E|CS|TAMS 0x0000000182000000, 0x0000000182000000| Complete 
+|  67|0x0000000183000000, 0x0000000184000000, 0x0000000184000000|100%| E|CS|TAMS 0x0000000183000000, 0x0000000183000000| Complete 
+|  68|0x0000000184000000, 0x0000000185000000, 0x0000000185000000|100%| E|CS|TAMS 0x0000000184000000, 0x0000000184000000| Complete 
+| 121|0x00000001b9000000, 0x00000001ba000000, 0x00000001ba000000|100%| E|CS|TAMS 0x00000001b9000000, 0x00000001b9000000| Complete 
+| 127|0x00000001bf000000, 0x00000001c0000000, 0x00000001c0000000|100%| E|CS|TAMS 0x00000001bf000000, 0x00000001bf000000| Complete 
+|1726|0x00000007fe000000, 0x00000007fef75000, 0x00000007ff000000| 96%|OA|  |TAMS 0x00000007fef75000, 0x00000007fe000000| Untracked 
+|1727|0x00000007ff000000, 0x00000007ff077000, 0x0000000800000000|  2%|CA|  |TAMS 0x00000007ff077000, 0x00000007ff000000| Untracked 
+
+Card table byte_map: [0x00001526b6980000,0x00001526b9f80000] _byte_map_base: 0x00001526b5f80000
+
+Marking Bits (Prev, Next): (CMBitMap*) 0x00001526d4048b50, (CMBitMap*) 0x00001526d4048b90
+ Prev Bits: [0x0000152698380000, 0x00001526b3380000)
+ Next Bits: [0x000015267d380000, 0x0000152698380000)
+
+Polling page: 0x00001526db550000
+
+Metaspace:
+
+Usage:
+  Non-class:     42.08 MB used.
+      Class:      6.10 MB used.
+       Both:     48.19 MB used.
+
+Virtual space:
+  Non-class space:       64.00 MB reserved,      42.25 MB ( 66%) committed,  1 nodes.
+      Class space:        1.00 GB reserved,       6.31 MB ( <1%) committed,  1 nodes.
+             Both:        1.06 GB reserved,      48.56 MB (  4%) committed. 
+
+Chunk freelists:
+   Non-Class:  5.69 MB
+       Class:  9.66 MB
+        Both:  15.34 MB
+
+MaxMetaspaceSize: unlimited
+CompressedClassSpaceSize: 1.00 GB
+Initial GC threshold: 21.00 MB
+Current GC threshold: 58.75 MB
+CDS: on
+MetaspaceReclaimPolicy: balanced
+ - commit_granule_bytes: 65536.
+ - commit_granule_words: 8192.
+ - virtual_space_node_default_size: 8388608.
+ - enlarge_chunks_in_place: 1.
+ - new_chunks_are_fully_committed: 0.
+ - uncommit_free_chunks: 1.
+ - use_allocation_guard: 0.
+ - handle_deallocations: 1.
+
+
+Internal statistics:
+
+num_allocs_failed_limit: 6.
+num_arena_births: 476.
+num_arena_deaths: 0.
+num_vsnodes_births: 2.
+num_vsnodes_deaths: 0.
+num_space_committed: 776.
+num_space_uncommitted: 0.
+num_chunks_returned_to_freelist: 6.
+num_chunks_taken_from_freelist: 2063.
+num_chunk_merges: 6.
+num_chunk_splits: 1618.
+num_chunks_enlarged: 1373.
+num_inconsistent_stats: 0.
+
+CodeHeap 'non-profiled nmethods': size=120028Kb used=12115Kb max_used=12181Kb free=107912Kb
+ bounds [0x00001526c5049000, 0x00001526c5c49000, 0x00001526cc580000]
+CodeHeap 'profiled nmethods': size=120028Kb used=8151Kb max_used=11408Kb free=111876Kb
+ bounds [0x00001526bd580000, 0x00001526be0e0000, 0x00001526c4ab7000]
+CodeHeap 'non-nmethods': size=5704Kb used=1317Kb max_used=1396Kb free=4386Kb
+ bounds [0x00001526c4ab7000, 0x00001526c4d27000, 0x00001526c5049000]
+ total_blobs=7022 nmethods=6366 adapters=569
+ compilation: enabled
+              stopped_count=0, restarted_count=0
+ full_count=0
+
+Compilation events (20 events):
+Event: 3599.450 Thread 0x00001526d41d04c0 9602       3       jdk.internal.org.objectweb.asm.Type::getObjectType (31 bytes)
+Event: 3599.450 Thread 0x00001526d41d04c0 nmethod 9602 0x00001526bdb32710 code [0x00001526bdb32940, 0x00001526bdb33170]
+Event: 3599.450 Thread 0x00001526d41d04c0 9605       3       org.broadinstitute.hellbender.utils.locusiterator.ReadStateManager::collectPendingReads (197 bytes)
+Event: 3599.452 Thread 0x00001526d41d04c0 nmethod 9605 0x00001526bde07c90 code [0x00001526bde08080, 0x00001526bde0a970]
+Event: 3599.452 Thread 0x00001526d41d04c0 9603       3       jdk.internal.org.objectweb.asm.Type::getClassName (172 bytes)
+Event: 3599.453 Thread 0x00001526d41d04c0 nmethod 9603 0x00001526bdf9d210 code [0x00001526bdf9d5a0, 0x00001526bdf9ea00]
+Event: 3599.453 Thread 0x00001526d41d04c0 9604       3       java.lang.invoke.MethodHandles$Lookup$ClassDefiner::defineClassAsLookup (19 bytes)
+Event: 3599.453 Thread 0x00001526d41d04c0 nmethod 9604 0x00001526bdcae810 code [0x00001526bdcae9c0, 0x00001526bdcaebb0]
+Event: 3599.566 Thread 0x00001526d41cef80 9606       4       org.broadinstitute.hellbender.utils.iterators.SamReaderQueryingIterator::next (5 bytes)
+Event: 3599.568 Thread 0x00001526d41cef80 nmethod 9606 0x00001526c50ad410 code [0x00001526c50ad5a0, 0x00001526c50ad728]
+Event: 3600.173 Thread 0x00001526d41cef80 9607       4       org.broadinstitute.hellbender.utils.locusiterator.ReadStateManager::collectPendingReads (197 bytes)
+Event: 3600.379 Thread 0x00001526d41cef80 nmethod 9607 0x00001526c57c0e10 code [0x00001526c57c1240, 0x00001526c57c4dd8]
+Event: 3600.379 Thread 0x00001526d41cef80 9608       4       org.broadinstitute.hellbender.utils.downsampling.PassThroughDownsampler::submit (9 bytes)
+Event: 3600.384 Thread 0x00001526d41cef80 nmethod 9608 0x00001526c50acd10 code [0x00001526c50acea0, 0x00001526c50ad298]
+Event: 3601.837 Thread 0x00001526d41cef80 9609       4       org.broadinstitute.hellbender.utils.iterators.SamReaderQueryingIterator::hasNext (13 bytes)
+Event: 3601.838 Thread 0x00001526d41cef80 nmethod 9609 0x00001526c5939d10 code [0x00001526c5939e80, 0x00001526c5939f18]
+Event: 3603.286 Thread 0x00001526d41cef80 9610   !   4       htsjdk.tribble.TabixFeatureReader$FeatureIterator::readNextRecord (128 bytes)
+Event: 3603.299 Thread 0x00001526d41cef80 nmethod 9610 0x00001526c5052a90 code [0x00001526c5052c80, 0x00001526c5053268]
+Event: 3604.429 Thread 0x00001526d41cef80 9611       4       htsjdk.samtools.MergingSamRecordIterator::addIfNotEmpty (24 bytes)
+Event: 3604.436 Thread 0x00001526d41cef80 nmethod 9611 0x00001526c5939290 code [0x00001526c5939440, 0x00001526c5939958]
+
+GC Heap History (20 events):
+Event: 3593.834 GC heap before
+{Heap before GC invocations=3508 (full 0):
+ garbage-first heap   total 1196032K, used 893155K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 43 young (704512K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3593.835 GC heap after
+{Heap after GC invocations=3509 (full 0):
+ garbage-first heap   total 1196032K, used 205962K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 1 young (16384K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3594.976 GC heap before
+{Heap before GC invocations=3509 (full 0):
+ garbage-first heap   total 1196032K, used 894090K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 43 young (704512K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3594.977 GC heap after
+{Heap after GC invocations=3510 (full 0):
+ garbage-first heap   total 1196032K, used 205878K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 1 young (16384K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3596.206 GC heap before
+{Heap before GC invocations=3510 (full 0):
+ garbage-first heap   total 1196032K, used 894006K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 43 young (704512K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3596.207 GC heap after
+{Heap after GC invocations=3511 (full 0):
+ garbage-first heap   total 1196032K, used 205122K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 1 young (16384K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3597.281 GC heap before
+{Heap before GC invocations=3511 (full 0):
+ garbage-first heap   total 1196032K, used 893250K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 43 young (704512K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3597.282 GC heap after
+{Heap after GC invocations=3512 (full 0):
+ garbage-first heap   total 1196032K, used 204986K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 1 young (16384K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3598.182 GC heap before
+{Heap before GC invocations=3512 (full 0):
+ garbage-first heap   total 1196032K, used 893114K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 43 young (704512K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3598.183 GC heap after
+{Heap after GC invocations=3513 (full 0):
+ garbage-first heap   total 1196032K, used 206903K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 1 young (16384K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3599.400 GC heap before
+{Heap before GC invocations=3513 (full 0):
+ garbage-first heap   total 1196032K, used 895031K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 43 young (704512K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3599.402 GC heap after
+{Heap after GC invocations=3514 (full 0):
+ garbage-first heap   total 1196032K, used 206413K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 1 young (16384K), 1 survivors (16384K)
+ Metaspace       used 49338K, committed 49728K, reserved 1114112K
+  class space    used 6248K, committed 6464K, reserved 1048576K
+}
+Event: 3600.513 GC heap before
+{Heap before GC invocations=3514 (full 0):
+ garbage-first heap   total 1196032K, used 894541K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 43 young (704512K), 1 survivors (16384K)
+ Metaspace       used 49344K, committed 49728K, reserved 1114112K
+  class space    used 6249K, committed 6464K, reserved 1048576K
+}
+Event: 3600.515 GC heap after
+{Heap after GC invocations=3515 (full 0):
+ garbage-first heap   total 1196032K, used 206040K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 1 young (16384K), 1 survivors (16384K)
+ Metaspace       used 49344K, committed 49728K, reserved 1114112K
+  class space    used 6249K, committed 6464K, reserved 1048576K
+}
+Event: 3601.625 GC heap before
+{Heap before GC invocations=3515 (full 0):
+ garbage-first heap   total 1196032K, used 894168K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 43 young (704512K), 1 survivors (16384K)
+ Metaspace       used 49344K, committed 49728K, reserved 1114112K
+  class space    used 6249K, committed 6464K, reserved 1048576K
+}
+Event: 3601.626 GC heap after
+{Heap after GC invocations=3516 (full 0):
+ garbage-first heap   total 1196032K, used 206813K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 1 young (16384K), 1 survivors (16384K)
+ Metaspace       used 49344K, committed 49728K, reserved 1114112K
+  class space    used 6249K, committed 6464K, reserved 1048576K
+}
+Event: 3602.908 GC heap before
+{Heap before GC invocations=3516 (full 0):
+ garbage-first heap   total 1196032K, used 894941K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 43 young (704512K), 1 survivors (16384K)
+ Metaspace       used 49344K, committed 49728K, reserved 1114112K
+  class space    used 6249K, committed 6464K, reserved 1048576K
+}
+Event: 3602.909 GC heap after
+{Heap after GC invocations=3517 (full 0):
+ garbage-first heap   total 1196032K, used 206571K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 1 young (16384K), 1 survivors (16384K)
+ Metaspace       used 49344K, committed 49728K, reserved 1114112K
+  class space    used 6249K, committed 6464K, reserved 1048576K
+}
+Event: 3604.250 GC heap before
+{Heap before GC invocations=3517 (full 0):
+ garbage-first heap   total 1196032K, used 894699K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 43 young (704512K), 1 survivors (16384K)
+ Metaspace       used 49344K, committed 49728K, reserved 1114112K
+  class space    used 6249K, committed 6464K, reserved 1048576K
+}
+Event: 3604.251 GC heap after
+{Heap after GC invocations=3518 (full 0):
+ garbage-first heap   total 1196032K, used 206719K [0x0000000140000000, 0x0000000800000000)
+  region size 16384K, 1 young (16384K), 1 survivors (16384K)
+ Metaspace       used 49344K, committed 49728K, reserved 1114112K
+  class space    used 6249K, committed 6464K, reserved 1048576K
+}
+
+Dll operation events (14 events):
+Event: 0.102 Loaded shared library /usr/lib/jvm/java-17-openjdk-amd64/lib/libjava.so
+Event: 0.358 Loaded shared library /usr/lib/jvm/java-17-openjdk-amd64/lib/libjsvml.so
+Event: 0.398 Loaded shared library /usr/lib/jvm/java-17-openjdk-amd64/lib/libnio.so
+Event: 0.614 Loaded shared library /usr/lib/jvm/java-17-openjdk-amd64/lib/libzip.so
+Event: 0.740 Loaded shared library /usr/lib/jvm/java-17-openjdk-amd64/lib/libverify.so
+Event: 0.818 Loaded shared library /usr/lib/jvm/java-17-openjdk-amd64/lib/libjimage.so
+Event: 1.086 Loaded shared library /usr/lib/jvm/java-17-openjdk-amd64/lib/libmanagement.so
+Event: 1.105 Loaded shared library /usr/lib/jvm/java-17-openjdk-amd64/lib/libmanagement_ext.so
+Event: 1.472 Loaded shared library /usr/lib/jvm/java-17-openjdk-amd64/lib/libnet.so
+Event: 3.735 Loaded shared library /tmp/libgkl_compression1165091873364945151.so
+Event: 3.907 Loaded shared library /usr/lib/jvm/java-17-openjdk-amd64/lib/libextnet.so
+Event: 4.467 Loaded shared library /tmp/libgkl_utils4807546618085563922.so
+Event: 4.468 Loaded shared library /tmp/libgkl_smithwaterman9720342859477987019.so
+Event: 4.516 Loaded shared library /tmp/libgkl_pairhmm_omp5993824932739952703.so
+
+Deoptimization events (20 events):
+Event: 3512.441 Thread 0x00001526d4016db0 DEOPT PACKING pc=0x00001526c5bf538c sp=0x00001526d9c3aa70
+Event: 3512.441 Thread 0x00001526d4016db0 DEOPT UNPACKING pc=0x00001526c4b0d699 sp=0x00001526d9c3a9f0 mode 2
+Event: 3512.698 Thread 0x00001526d4016db0 DEOPT PACKING pc=0x00001526bdc455fa sp=0x00001526d9c3b120
+Event: 3512.698 Thread 0x00001526d4016db0 DEOPT UNPACKING pc=0x00001526c4b0de2f sp=0x00001526d9c3a758 mode 0
+Event: 3513.469 Thread 0x00001526d4016db0 DEOPT PACKING pc=0x00001526bdc455fa sp=0x00001526d9c3b120
+Event: 3513.469 Thread 0x00001526d4016db0 DEOPT UNPACKING pc=0x00001526c4b0de2f sp=0x00001526d9c3a758 mode 0
+Event: 3514.370 Thread 0x00001526d4016db0 DEOPT PACKING pc=0x00001526bdc455fa sp=0x00001526d9c3b120
+Event: 3514.370 Thread 0x00001526d4016db0 DEOPT UNPACKING pc=0x00001526c4b0de2f sp=0x00001526d9c3a758 mode 0
+Event: 3515.528 Thread 0x00001526d4016db0 DEOPT PACKING pc=0x00001526bdc455fa sp=0x00001526d9c3b120
+Event: 3515.528 Thread 0x00001526d4016db0 DEOPT UNPACKING pc=0x00001526c4b0de2f sp=0x00001526d9c3a758 mode 0
+Event: 3516.616 Thread 0x00001526d4016db0 DEOPT PACKING pc=0x00001526bdc455fa sp=0x00001526d9c3b120
+Event: 3516.616 Thread 0x00001526d4016db0 DEOPT UNPACKING pc=0x00001526c4b0de2f sp=0x00001526d9c3a758 mode 0
+Event: 3599.449 Thread 0x00001526d4016db0 Uncommon trap: trap_request=0xffffff45 fr.pc=0x00001526c59a4c8c relative=0x00000000000064cc
+Event: 3599.449 Thread 0x00001526d4016db0 Uncommon trap: reason=unstable_if action=reinterpret pc=0x00001526c59a4c8c method=org.broadinstitute.hellbender.utils.downsampling.MutectDownsampler.finalizePendingReads()V @ 20 c2
+Event: 3599.449 Thread 0x00001526d4016db0 DEOPT PACKING pc=0x00001526c59a4c8c sp=0x00001526d9c3b030
+Event: 3599.449 Thread 0x00001526d4016db0 DEOPT UNPACKING pc=0x00001526c4b0d699 sp=0x00001526d9c3ac08 mode 2
+Event: 3599.661 Thread 0x00001526d4016db0 Uncommon trap: trap_request=0xffffffde fr.pc=0x00001526c56eb108 relative=0x0000000000000ba8
+Event: 3599.661 Thread 0x00001526d4016db0 Uncommon trap: reason=class_check action=maybe_recompile pc=0x00001526c56eb108 method=org.broadinstitute.hellbender.utils.read.Fragment.create(Ljava/util/List;)Lorg/broadinstitute/hellbender/utils/read/Fragment; @ 1 c2
+Event: 3599.661 Thread 0x00001526d4016db0 DEOPT PACKING pc=0x00001526c56eb108 sp=0x00001526d9c3aed0
+Event: 3599.661 Thread 0x00001526d4016db0 DEOPT UNPACKING pc=0x00001526c4b0d699 sp=0x00001526d9c3aec8 mode 2
+
+Classes loaded (20 events):
+Event: 5.865 Loading class java/util/stream/SpinedBuffer done
+Event: 5.865 Loading class java/util/stream/Nodes$SpinedNodeBuilder done
+Event: 6.442 Loading class java/util/ArrayList$SubList$1
+Event: 6.442 Loading class java/util/ArrayList$SubList$1 done
+Event: 7.143 Loading class java/util/DualPivotQuicksort$Sorter
+Event: 7.144 Loading class java/util/DualPivotQuicksort$Sorter done
+Event: 8.853 Loading class java/util/function/DoubleToIntFunction
+Event: 8.853 Loading class java/util/function/DoubleToIntFunction done
+Event: 8.853 Loading class java/util/stream/DoublePipeline$3
+Event: 8.853 Loading class java/util/stream/DoublePipeline$3 done
+Event: 8.853 Loading class java/util/stream/DoublePipeline$3$1
+Event: 8.853 Loading class java/util/stream/DoublePipeline$3$1 done
+Event: 54.297 Loading class java/util/concurrent/locks/AbstractQueuedSynchronizer$Node
+Event: 54.297 Loading class java/util/concurrent/locks/AbstractQueuedSynchronizer$Node done
+Event: 180.986 Loading class java/io/ObjectInputStream
+Event: 180.989 Loading class java/io/ObjectInput
+Event: 180.989 Loading class java/io/ObjectInput done
+Event: 180.990 Loading class java/io/ObjectStreamConstants
+Event: 180.990 Loading class java/io/ObjectStreamConstants done
+Event: 180.990 Loading class java/io/ObjectInputStream done
+
+Classes unloaded (0 events):
+No events
+
+Classes redefined (0 events):
+No events
+
+Internal exceptions (20 events):
+Event: 5.861 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x00000001b98d0758}: 'int java.lang.invoke.DirectMethodHandle$Holder.invokeSpecial(java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object)'> (0x00000001b98d0758) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 5.862 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x00000001b98e1078}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.newInvokeSpecial(java.lang.Object, java.lang.Object, java.lang.Object, int, java.lang.Object)'> (0x00000001b98e1078) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 5.863 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x00000001b98e8a48}: 'java.lang.Object java.lang.invoke.Invokers$Holder.linkToTargetMethod(java.lang.Object, java.lang.Object, int, java.lang.Object, java.lang.Object)'> (0x00000001b98e8a48) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.847 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fa68cf8}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.newInvokeSpecial(java.lang.Object, java.lang.Object, double)'> (0x000000017fa68cf8) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.848 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fa6cbb8}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.invokeSpecial(java.lang.Object, java.lang.Object, java.lang.Object, double)'> (0x000000017fa6cbb8) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.850 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fa801b8}: 'double java.lang.invoke.DirectMethodHandle$Holder.invokeSpecial(java.lang.Object, java.lang.Object, java.lang.Object)'> (0x000000017fa801b8) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.851 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fa8b820}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.invokeSpecial(java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, int)'> (0x000000017fa8b820) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.851 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fa93770}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.invokeStatic(java.lang.Object, java.lang.Object, int)'> (0x000000017fa93770) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.857 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fac9820}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.newInvokeSpecial(java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object)'> (0x000000017fac9820) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.861 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fb07c18}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.newInvokeSpecial(java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object)'> (0x000000017fb07c18) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.862 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fb0cdd0}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.invokeSpecial(java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object)'> (0x000000017fb0cdd0) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.862 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fb11398}: 'java.lang.Object java.lang.invoke.Invokers$Holder.linkToTargetMethod(java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object)'> (0x000000017fb11398) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.870 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fb6da50}: 'void java.lang.invoke.DirectMethodHandle$Holder.invokeSpecial(java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object)'> (0x000000017fb6da50) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.874 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fb9eed8}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.newInvokeSpecial(java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object)'> (0x000000017fb9eed8) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.874 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fba3e40}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.invokeSpecial(java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object)'> (0x000000017fba3e40) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 8.874 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x000000017fba8750}: 'java.lang.Object java.lang.invoke.Invokers$Holder.linkToTargetMethod(java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object, java.lang.Object)'> (0x000000017fba8750) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 16.949 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x00000001674a54f8}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.invokeVirtual(java.lang.Object, java.lang.Object, java.lang.Object)'> (0x00000001674a54f8) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 51.871 Thread 0x00001526d4016db0 Exception <a 'java/lang/NoSuchMethodError'{0x0000000177243278}: 'java.lang.Object java.lang.invoke.DirectMethodHandle$Holder.invokeStatic(java.lang.Object, double, java.lang.Object)'> (0x0000000177243278) 
+thrown [./src/hotspot/share/interpreter/linkResolver.cpp, line 758]
+Event: 3512.273 Thread 0x00001526d4016db0 Implicit null exception at 0x00001526c5ba6e55 to 0x00001526c5bad4c0
+Event: 3512.441 Thread 0x00001526d4016db0 Implicit null exception at 0x00001526c5beff6a to 0x00001526c5bf5370
+
+VM Operations (20 events):
+Event: 3594.976 Executing VM operation: G1CollectForAllocation
+Event: 3594.977 Executing VM operation: G1CollectForAllocation done
+Event: 3596.206 Executing VM operation: G1CollectForAllocation
+Event: 3596.207 Executing VM operation: G1CollectForAllocation done
+Event: 3597.281 Executing VM operation: G1CollectForAllocation
+Event: 3597.282 Executing VM operation: G1CollectForAllocation done
+Event: 3598.182 Executing VM operation: G1CollectForAllocation
+Event: 3598.183 Executing VM operation: G1CollectForAllocation done
+Event: 3599.400 Executing VM operation: G1CollectForAllocation
+Event: 3599.402 Executing VM operation: G1CollectForAllocation done
+Event: 3600.402 Executing VM operation: Cleanup
+Event: 3600.402 Executing VM operation: Cleanup done
+Event: 3600.513 Executing VM operation: G1CollectForAllocation
+Event: 3600.515 Executing VM operation: G1CollectForAllocation done
+Event: 3601.625 Executing VM operation: G1CollectForAllocation
+Event: 3601.626 Executing VM operation: G1CollectForAllocation done
+Event: 3602.908 Executing VM operation: G1CollectForAllocation
+Event: 3602.909 Executing VM operation: G1CollectForAllocation done
+Event: 3604.250 Executing VM operation: G1CollectForAllocation
+Event: 3604.251 Executing VM operation: G1CollectForAllocation done
+
+Events (20 events):
+Event: 2295.883 Thread 0x00001526d41d1940 flushing nmethod 0x00001526bdf9d210
+Event: 2295.883 Thread 0x00001526d41d1940 flushing nmethod 0x00001526bdfa3f90
+Event: 2295.883 Thread 0x00001526d41d1940 flushing nmethod 0x00001526bdfaad10
+Event: 2295.883 Thread 0x00001526d41d1940 flushing nmethod 0x00001526bdfba790
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526bdfbc610
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526bdfc1c90
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526bdfc7090
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526bdfcb090
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526bdfd9f90
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526bdfea210
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526be00f610
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526be01f710
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526be02eb10
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526be042790
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526be07d190
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526be0a0d10
+Event: 2295.884 Thread 0x00001526d41d1940 flushing nmethod 0x00001526be0a5e10
+Event: 3512.351 Thread 0x00001525f839cc50 Thread added: 0x00001525f839cc50
+Event: 3512.351 Protecting memory [0x000015267c674000,0x000015267c678000] with protection modes 0
+Event: 3514.154 Thread 0x00001525f839cc50 Thread exited: 0x00001525f839cc50
+
+
+Dynamic libraries:
+140000000-185000000 rw-p 00000000 00:00 0 
+185000000-1b9000000 ---p 00000000 00:00 0 
+1b9000000-1ba000000 rw-p 00000000 00:00 0 
+1ba000000-1bf000000 ---p 00000000 00:00 0 
+1bf000000-1c0000000 rw-p 00000000 00:00 0 
+1c0000000-7fe000000 ---p 00000000 00:00 0 
+7fe000000-7fef00000 rw-p 00000000 00:00 0 
+7fef00000-7fef75000 rw-p 00c73000 07:02 130439                           /usr/lib/jvm/java-17-openjdk-amd64/lib/server/classes.jsa
+7fef75000-7ff000000 rw-p 00000000 00:00 0 
+7ff000000-7ff077000 rw-p 00bfc000 07:02 130439                           /usr/lib/jvm/java-17-openjdk-amd64/lib/server/classes.jsa
+7ff077000-800000000 rw-p 00000000 00:00 0 
+1525b8000000-1525bbc01000 rw-p 00000000 00:00 0 
+1525bbc01000-1525bc000000 ---p 00000000 00:00 0 
+1525bc000000-1525bd801000 rw-p 00000000 00:00 0 
+1525bd801000-1525c0000000 ---p 00000000 00:00 0 
+1525c0000000-1525c1904000 rw-p 00000000 00:00 0 
+1525c1904000-1525c4000000 ---p 00000000 00:00 0 
+1525c4abe000-1525c8000000 r--s 00000000 00:2b 1837254227968470288        /mnt/beegfs02/scratch/t_steimle/data/wgs/CHALO/diag/CHALO_diag_hs1.bam.bai
+1525c8000000-1525c8021000 rw-p 00000000 00:00 0 
+1525c8021000-1525cc000000 ---p 00000000 00:00 0 
+1525cc000000-1525cc021000 rw-p 00000000 00:00 0 
+1525cc021000-1525d0000000 ---p 00000000 00:00 0 
+1525d0000000-1525d0021000 rw-p 00000000 00:00 0 
+1525d0021000-1525d4000000 ---p 00000000 00:00 0 
+1525d4000000-1525d4021000 rw-p 00000000 00:00 0 
+1525d4021000-1525d8000000 ---p 00000000 00:00 0 
+1525d8000000-1525d8021000 rw-p 00000000 00:00 0 
+1525d8021000-1525dc000000 ---p 00000000 00:00 0 
+1525dc000000-1525dc021000 rw-p 00000000 00:00 0 
+1525dc021000-1525e0000000 ---p 00000000 00:00 0 
+1525e0000000-1525e0021000 rw-p 00000000 00:00 0 
+1525e0021000-1525e4000000 ---p 00000000 00:00 0 
+1525e4000000-1525e4021000 rw-p 00000000 00:00 0 
+1525e4021000-1525e8000000 ---p 00000000 00:00 0 
+1525e8000000-1525e8021000 rw-p 00000000 00:00 0 
+1525e8021000-1525ec000000 ---p 00000000 00:00 0 
+1525ec000000-1525ed4be000 rw-p 00000000 00:00 0 
+1525ed4be000-1525f0000000 ---p 00000000 00:00 0 
+1525f0000000-1525f0021000 rw-p 00000000 00:00 0 
+1525f0021000-1525f4000000 ---p 00000000 00:00 0 
+1525f4000000-1525f4021000 rw-p 00000000 00:00 0 
+1525f4021000-1525f8000000 ---p 00000000 00:00 0 
+1525f8000000-1525f8573000 rw-p 00000000 00:00 0 
+1525f8573000-1525fc000000 ---p 00000000 00:00 0 
+1525fc000000-1525fc021000 rw-p 00000000 00:00 0 
+1525fc021000-152600000000 ---p 00000000 00:00 0 
+152600000000-152600021000 rw-p 00000000 00:00 0 
+152600021000-152604000000 ---p 00000000 00:00 0 
+152604000000-152607817000 rw-p 00000000 00:00 0 
+152607817000-152608000000 ---p 00000000 00:00 0 
+152608000000-152608021000 rw-p 00000000 00:00 0 
+152608021000-15260c000000 ---p 00000000 00:00 0 
+15260c000000-15260c021000 rw-p 00000000 00:00 0 
+15260c021000-152610000000 ---p 00000000 00:00 0 
+152610000000-152610021000 rw-p 00000000 00:00 0 
+152610021000-152614000000 ---p 00000000 00:00 0 
+152614000000-152614021000 rw-p 00000000 00:00 0 
+152614021000-152618000000 ---p 00000000 00:00 0 
+152618000000-152618021000 rw-p 00000000 00:00 0 
+152618021000-15261c000000 ---p 00000000 00:00 0 
+15261d9be000-15261d9bf000 ---p 00000000 00:00 0 
+15261d9bf000-15261dbbf000 rw-p 00000000 00:00 0 
+15261dbbf000-15261f000000 r--s 00000000 00:2b 2395830594998280757        /mnt/beegfs02/scratch/t_steimle/data/wgs/CHALO/norm/CHALO_norm_hs1.bam.bai
+15261f000000-15261f453000 rw-p 00001000 07:02 130439                     /usr/lib/jvm/java-17-openjdk-amd64/lib/server/classes.jsa
+15261f453000-15261fbc4000 rw-p 00454000 07:02 130439                     /usr/lib/jvm/java-17-openjdk-amd64/lib/server/classes.jsa
+15261fbc4000-152620000000 ---p 00000000 00:00 0 
+152620000000-152620030000 rw-p 00000000 00:00 0 
+152620030000-152620070000 rw-p 00000000 00:00 0 
+152620070000-1526200d0000 rw-p 00000000 00:00 0 
+1526200d0000-152620130000 rw-p 00000000 00:00 0 
+152620130000-152620170000 rw-p 00000000 00:00 0 
+152620170000-152620570000 rw-p 00000000 00:00 0 
+152620570000-152620580000 ---p 00000000 00:00 0 
+152620580000-152620660000 rw-p 00000000 00:00 0 
+152620660000-152660000000 ---p 00000000 00:00 0 
+152660000000-152660021000 rw-p 00000000 00:00 0 
+152660021000-152664000000 ---p 00000000 00:00 0 
+152664000000-1526643f0000 rw-p 00000000 00:00 0 
+1526643f0000-152665df0000 rw-p 00000000 00:00 0 
+152665df0000-152665ef0000 rw-p 00000000 00:00 0 
+152665ef0000-152665ff0000 rw-p 00000000 00:00 0 
+152665ff0000-1526660f0000 rw-p 00000000 00:00 0 
+1526660f0000-1526661f0000 rw-p 00000000 00:00 0 
+1526661f0000-1526665b0000 rw-p 00000000 00:00 0 
+1526665b0000-1526665f0000 rw-p 00000000 00:00 0 
+1526665f0000-152666610000 rw-p 00000000 00:00 0 
+152666610000-1526666f0000 rw-p 00000000 00:00 0 
+1526666f0000-1526667f0000 rw-p 00000000 00:00 0 
+1526667f0000-152666800000 ---p 00000000 00:00 0 
+152666800000-152666a50000 rw-p 00000000 00:00 0 
+152666a50000-152668000000 ---p 00000000 00:00 0 
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+1526da1c1000-1526daf2b000 r-xp 00251000 07:02 130442                     /usr/lib/jvm/java-17-openjdk-amd64/lib/server/libjvm.so
+1526daf2b000-1526db1ad000 r--p 00fbb000 07:02 130442                     /usr/lib/jvm/java-17-openjdk-amd64/lib/server/libjvm.so
+1526db1ad000-1526db1ae000 ---p 0123d000 07:02 130442                     /usr/lib/jvm/java-17-openjdk-amd64/lib/server/libjvm.so
+1526db1ae000-1526db266000 r--p 0123d000 07:02 130442                     /usr/lib/jvm/java-17-openjdk-amd64/lib/server/libjvm.so
+1526db266000-1526db29b000 rw-p 012f5000 07:02 130442                     /usr/lib/jvm/java-17-openjdk-amd64/lib/server/libjvm.so
+1526db29b000-1526db2f7000 rw-p 00000000 00:00 0 
+1526db2f7000-1526db31f000 r--p 00000000 07:02 134037                     /usr/lib/x86_64-linux-gnu/libc.so.6
+1526db31f000-1526db4b4000 r-xp 00028000 07:02 134037                     /usr/lib/x86_64-linux-gnu/libc.so.6
+1526db4b4000-1526db50c000 r--p 001bd000 07:02 134037                     /usr/lib/x86_64-linux-gnu/libc.so.6
+1526db50c000-1526db50d000 ---p 00215000 07:02 134037                     /usr/lib/x86_64-linux-gnu/libc.so.6
+1526db50d000-1526db511000 r--p 00215000 07:02 134037                     /usr/lib/x86_64-linux-gnu/libc.so.6
+1526db511000-1526db513000 rw-p 00219000 07:02 134037                     /usr/lib/x86_64-linux-gnu/libc.so.6
+1526db513000-1526db520000 rw-p 00000000 00:00 0 
+1526db520000-1526db522000 r--p 00000000 07:02 130411                     /usr/lib/jvm/java-17-openjdk-amd64/lib/libjli.so
+1526db522000-1526db52c000 r-xp 00002000 07:02 130411                     /usr/lib/jvm/java-17-openjdk-amd64/lib/libjli.so
+1526db52c000-1526db52f000 r--p 0000c000 07:02 130411                     /usr/lib/jvm/java-17-openjdk-amd64/lib/libjli.so
+1526db52f000-1526db530000 r--p 0000e000 07:02 130411                     /usr/lib/jvm/java-17-openjdk-amd64/lib/libjli.so
+1526db530000-1526db531000 rw-p 0000f000 07:02 130411                     /usr/lib/jvm/java-17-openjdk-amd64/lib/libjli.so
+1526db531000-1526db533000 r--p 00000000 07:02 134444                     /usr/lib/x86_64-linux-gnu/libz.so.1.2.11
+1526db533000-1526db544000 r-xp 00002000 07:02 134444                     /usr/lib/x86_64-linux-gnu/libz.so.1.2.11
+1526db544000-1526db54a000 r--p 00013000 07:02 134444                     /usr/lib/x86_64-linux-gnu/libz.so.1.2.11
+1526db54a000-1526db54b000 ---p 00019000 07:02 134444                     /usr/lib/x86_64-linux-gnu/libz.so.1.2.11
+1526db54b000-1526db54c000 r--p 00019000 07:02 134444                     /usr/lib/x86_64-linux-gnu/libz.so.1.2.11
+1526db54c000-1526db54d000 rw-p 0001a000 07:02 134444                     /usr/lib/x86_64-linux-gnu/libz.so.1.2.11
+1526db550000-1526db551000 ---p 00000000 00:00 0 
+1526db551000-1526db552000 r--p 00000000 00:00 0 
+1526db552000-1526db554000 rw-p 00000000 00:00 0 
+1526db554000-1526db556000 r--p 00000000 07:02 133794                     /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
+1526db556000-1526db580000 r-xp 00002000 07:02 133794                     /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
+1526db580000-1526db58b000 r--p 0002c000 07:02 133794                     /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
+1526db58b000-1526db58c000 ---p 00000000 00:00 0 
+1526db58c000-1526db58e000 r--p 00037000 07:02 133794                     /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
+1526db58e000-1526db590000 rw-p 00039000 07:02 133794                     /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
+55a181a47000-55a181a48000 r--p 00000000 07:02 130083                     /usr/lib/jvm/java-17-openjdk-amd64/bin/java
+55a181a48000-55a181a49000 r-xp 00001000 07:02 130083                     /usr/lib/jvm/java-17-openjdk-amd64/bin/java
+55a181a49000-55a181a4a000 r--p 00002000 07:02 130083                     /usr/lib/jvm/java-17-openjdk-amd64/bin/java
+55a181a4a000-55a181a4b000 r--p 00002000 07:02 130083                     /usr/lib/jvm/java-17-openjdk-amd64/bin/java
+55a181a4b000-55a181a4c000 rw-p 00003000 07:02 130083                     /usr/lib/jvm/java-17-openjdk-amd64/bin/java
+55a182639000-55a182680000 rw-p 00000000 00:00 0                          [heap]
+7ffcaffa5000-7ffcaffc9000 rw-p 00000000 00:00 0                          [stack]
+7ffcaffde000-7ffcaffe2000 r--p 00000000 00:00 0                          [vvar]
+7ffcaffe2000-7ffcaffe4000 r-xp 00000000 00:00 0                          [vdso]
+ffffffffff600000-ffffffffff601000 --xp 00000000 00:00 0                  [vsyscall]
+
+
+VM Arguments:
+jvm_args: -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx27g 
+java_command: /gatk/gatk-package-4.6.2.0-local.jar Mutect2 --reference /home/t_steimle/ref/hs1/chm13v2.0.fa --input /mnt/beegfs02/scratch/t_steimle/data/wgs/CHALO/diag/CHALO_diag_hs1.bam --input /mnt/beegfs02/scratch/t_steimle/data/wgs/CHALO/norm/CHALO_norm_hs1.bam --normal-sample barcode06 --intervals /mnt/beegfs02/scratch/t_steimle/data/wgs/CHALO/diag/GATK/part39/intervals.bed --callable-depth 6 --germline-resource /mnt/beegfs02/scratch/t_steimle/data/wgs/CHALO/diag/ClairS/CHALO_diag_clair3-germline_PASSED.vcf.gz --native-pair-hmm-threads 8 --f1r2-tar-gz /output/f1r2.tar.gz --output /output/raw.vcf.gz
+java_class_path (initial): /gatk/gatk-package-4.6.2.0-local.jar
+Launcher Type: SUN_STANDARD
+
+[Global flags]
+     intx CICompilerCount                          = 4                                         {product} {ergonomic}
+     uint ConcGCThreads                            = 2                                         {product} {ergonomic}
+     uint G1ConcRefinementThreads                  = 8                                         {product} {ergonomic}
+   size_t G1HeapRegionSize                         = 16777216                                  {product} {ergonomic}
+    uintx GCDrainStackTargetSize                   = 64                                        {product} {ergonomic}
+   size_t InitialHeapSize                          = 2147483648                                {product} {ergonomic}
+   size_t MarkStackSize                            = 4194304                                   {product} {ergonomic}
+   size_t MaxHeapSize                              = 28991029248                               {product} {command line}
+   size_t MaxNewSize                               = 17381195776                               {product} {ergonomic}
+   size_t MinHeapDeltaBytes                        = 16777216                                  {product} {ergonomic}
+   size_t MinHeapSize                              = 16777216                                  {product} {ergonomic}
+    uintx NonNMethodCodeHeapSize                   = 5839372                                {pd product} {ergonomic}
+    uintx NonProfiledCodeHeapSize                  = 122909434                              {pd product} {ergonomic}
+    uintx ProfiledCodeHeapSize                     = 122909434                              {pd product} {ergonomic}
+    uintx ReservedCodeCacheSize                    = 251658240                              {pd product} {ergonomic}
+     bool SegmentedCodeCache                       = true                                      {product} {ergonomic}
+   size_t SoftMaxHeapSize                          = 28991029248                            {manageable} {ergonomic}
+     bool UseCompressedClassPointers               = true                           {product lp64_product} {ergonomic}
+     bool UseCompressedOops                        = true                           {product lp64_product} {ergonomic}
+     bool UseG1GC                                  = true                                      {product} {ergonomic}
+
+Logging:
+Log output configuration:
+ #0: stdout all=warning uptime,level,tags
+ #1: stderr all=off uptime,level,tags
+
+Environment Variables:
+CLASSPATH=/gatk/gatk.jar:
+PATH=/gatk:/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
+LD_LIBRARY_PATH=/.singularity.d/libs
+SHELL=/bin/bash
+LANG=en_US.UTF-8
+LC_CTYPE=C.UTF-8
+TERM=screen-256color
+TMPDIR=/tmp
+
+Active Locale:
+LC_ALL=C
+LC_COLLATE=C
+LC_CTYPE=C
+LC_MESSAGES=C
+LC_MONETARY=C
+LC_NUMERIC=C
+LC_TIME=C
+
+Signal Handlers:
+   SIGSEGV: crash_handler in libjvm.so, mask=11100100010111111101111111111110, flags=SA_RESTART|SA_SIGINFO, unblocked
+    SIGBUS: crash_handler in libjvm.so, mask=11100100010111111101111111111110, flags=SA_RESTART|SA_SIGINFO, unblocked
+    SIGFPE: crash_handler in libjvm.so, mask=11100100010111111101111111111110, flags=SA_RESTART|SA_SIGINFO, unblocked
+   SIGPIPE: javaSignalHandler in libjvm.so, mask=11100100010111111101111111111110, flags=SA_RESTART|SA_SIGINFO, blocked
+   SIGXFSZ: javaSignalHandler in libjvm.so, mask=11100100010111111101111111111110, flags=SA_RESTART|SA_SIGINFO, blocked
+    SIGILL: crash_handler in libjvm.so, mask=11100100010111111101111111111110, flags=SA_RESTART|SA_SIGINFO, unblocked
+   SIGUSR2: SR_handler in libjvm.so, mask=00000000000000000000000000000000, flags=SA_RESTART|SA_SIGINFO, blocked
+    SIGHUP: UserHandler in libjvm.so, mask=11100100010111111101111111111110, flags=SA_RESTART|SA_SIGINFO, blocked
+    SIGINT: UserHandler in libjvm.so, mask=11100100010111111101111111111110, flags=SA_RESTART|SA_SIGINFO, blocked
+   SIGTERM: UserHandler in libjvm.so, mask=11100100010111111101111111111110, flags=SA_RESTART|SA_SIGINFO, blocked
+   SIGQUIT: UserHandler in libjvm.so, mask=11100100010111111101111111111110, flags=SA_RESTART|SA_SIGINFO, blocked
+   SIGTRAP: crash_handler in libjvm.so, mask=11100100010111111101111111111110, flags=SA_RESTART|SA_SIGINFO, unblocked
+
+
+Periodic native trim disabled
+
+
+---------------  S Y S T E M  ---------------
+
+OS:
+DISTRIB_ID=Ubuntu
+DISTRIB_RELEASE=22.04
+DISTRIB_CODENAME=jammy
+DISTRIB_DESCRIPTION="Ubuntu 22.04.5 LTS"
+uname: Linux 5.14.0-503.22.1.el9_5.x86_64 #1 SMP PREEMPT_DYNAMIC Wed Jan 22 06:06:37 PST 2025 x86_64
+OS uptime: 56 days 4:51 hours
+libc: glibc 2.35 NPTL 2.35 
+rlimit (soft/hard): STACK infinity/infinity , CORE infinity/infinity , NPROC 511467/1028602 , NOFILE 131072/131072 , AS infinity/infinity , CPU infinity/infinity , DATA infinity/infinity , FSIZE infinity/infinity , MEMLOCK infinity/infinity
+load average: 11.57 12.27 11.97
+
+/proc/meminfo:
+MemTotal:       263363812 kB
+MemFree:        187340804 kB
+MemAvailable:   217679832 kB
+Buffers:            5236 kB
+Cached:         31580856 kB
+SwapCached:            0 kB
+Active:         45618488 kB
+Inactive:       27494968 kB
+Active(anon):   41702584 kB
+Inactive(anon):   413064 kB
+Active(file):    3915904 kB
+Inactive(file): 27081904 kB
+Unevictable:        3084 kB
+Mlocked:              12 kB
+SwapTotal:             0 kB
+SwapFree:              0 kB
+Zswap:                 0 kB
+Zswapped:              0 kB
+Dirty:               572 kB
+Writeback:             0 kB
+AnonPages:      41523668 kB
+Mapped:           587128 kB
+Shmem:            588284 kB
+KReclaimable:    1360708 kB
+Slab:            1836428 kB
+SReclaimable:    1360708 kB
+SUnreclaim:       475720 kB
+KernelStack:       16272 kB
+PageTables:        93772 kB
+SecPageTables:         0 kB
+NFS_Unstable:          0 kB
+Bounce:                0 kB
+WritebackTmp:          0 kB
+CommitLimit:    131681904 kB
+Committed_AS:   68396320 kB
+VmallocTotal:   34359738367 kB
+VmallocUsed:      496444 kB
+VmallocChunk:          0 kB
+Percpu:            61056 kB
+HardwareCorrupted:     0 kB
+AnonHugePages:  29360128 kB
+ShmemHugePages:        0 kB
+ShmemPmdMapped:        0 kB
+FileHugePages:         0 kB
+FilePmdMapped:         0 kB
+CmaTotal:              0 kB
+CmaFree:               0 kB
+Unaccepted:            0 kB
+HugePages_Total:       0
+HugePages_Free:        0
+HugePages_Rsvd:        0
+HugePages_Surp:        0
+Hugepagesize:       2048 kB
+Hugetlb:               0 kB
+DirectMap4k:      445140 kB
+DirectMap2M:    30785536 kB
+DirectMap1G:    239075328 kB
+
+/sys/kernel/mm/transparent_hugepage/enabled: [always] madvise never
+/sys/kernel/mm/transparent_hugepage/hpage_pmd_size: 2097152
+/sys/kernel/mm/transparent_hugepage/defrag (defrag/compaction efforts parameter): always defer defer+madvise [madvise] never
+
+Process Memory:
+Virtual Size: 33040660K (peak: 33106200K)
+Resident Set Size: 1334092K (peak: 1348260K) (anon: 1247692K, file: 86400K, shmem: 0K)
+Swapped out: 0K
+C-Heap outstanding allocations: 58673K, retained: 205290K
+glibc malloc tunables: (default)
+
+/proc/sys/kernel/threads-max (system-wide limit on the number of threads): 2057205
+/proc/sys/vm/max_map_count (maximum number of memory map areas a process may have): 65530
+/proc/sys/vm/swappiness (control to define how aggressively the kernel swaps out anonymous memory): 10
+/proc/sys/kernel/pid_max (system-wide limit on number of process identifiers): 4194304
+
+container information not found.
+Steal ticks since vm start: 0
+Steal ticks percentage since vm start:  0.000
+
+CPU: total 48 (initial active 8) (12 cores per cpu, 2 threads per core) family 6 model 63 stepping 2 microcode 0x49, cx8, cmov, fxsr, ht, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, lzcnt, tsc, tscinvbit, avx, avx2, aes, erms, clmul, bmi1, bmi2, fma, vzeroupper, clflush
+CPU Model and flags from /proc/cpuinfo:
+model name	: Intel(R) Xeon(R) CPU E5-2670 v3 @ 2.30GHz
+flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb pti ssbd ibrs ibpb stibp tpr_shadow flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts vnmi md_clear flush_l1d
+
+Online cpus: 0-47
+Offline cpus: 
+BIOS frequency limitation: <Not Available>
+Frequency switch latency (ns): 20000
+Available cpu frequencies: <Not Available>
+Current governor: performance
+Core performance/turbo boost: <Not Available>
+
+Memory: 4k page, physical 263363812k(187340804k free), swap 0k(0k free)
+Page Sizes: 4k
+
+vm_info: OpenJDK 64-Bit Server VM (17.0.12+7-Ubuntu-1ubuntu222.04) for linux-amd64 JRE (17.0.12+7-Ubuntu-1ubuntu222.04), built on Jul 21 2024 21:22:32 by "buildd" with gcc 11.4.0
+
+END.

src/callers/gatk.rs

@@ -241,6 +241,16 @@ impl Initialize for Mutect2 {
         )?;
         info!("Normal sample name from BAM header: {normal_sample}");
 
+        let germline = config.constit_vcf(&id);
+        let tbi = format!("{germline}.tbi");
+        if !Path::new(&tbi).exists() {
+            info!("Indexing germline resource VCF: {germline}");
+            let mut bcftools_index = BcftoolsIndex::from_config(config, germline);
+            bcftools_index.tbi = true;
+            let _out = run!(config, &mut bcftools_index)?
+                .save_to_file(format!("{log_dir}/bcftools_index_"))?;
+        }
+
         let mutect2 = Self {
             id,
             bed_path,
@@ -319,7 +329,7 @@ impl JobCommand for Mutect2 {
                 --normal-sample {normal_sample} \
                 --intervals {bed} \
                 --callable-depth 6 \
-                --germline-resource \
+                --germline-resource {germline} \
                 --native-pair-hmm-threads {threads} \
                 --f1r2-tar-gz /output/f1r2.tar.gz \
                 --output /output/raw.vcf.gz \

src/callers/nanomonsv.rs

@@ -148,7 +148,7 @@ impl SlurmRunner for NanomonSV {
             job_name: Some(format!("nanomonsv_{}", self.id)),
             cpus_per_task: Some(self.threads as u32),
             mem: Some(format!("{mem}G")),
-            partition: Some("shortq".into()),
+            partition: Some("mediumq".into()),
             gres: None,
         }
         .to_args()
@@ -161,7 +161,7 @@ impl SbatchRunner for NanomonSV {
             job_name: Some(format!("nanomonsv_{}", self.id)),
             cpus_per_task: Some(self.threads as u32),
             mem: Some(format!("{mem}G")),
-            partition: Some("shortq".into()),
+            partition: Some("mediumq".into()),
             gres: None,
         }
     }

src/commands/bcftools.rs

@@ -360,6 +360,7 @@ pub struct BcftoolsIndex {
     pub threads: u8,
     /// VCF/BCF file to index.
     pub vcf: PathBuf,
+    pub tbi: bool,
 }
 
 impl BcftoolsIndex {
@@ -369,6 +370,7 @@ impl BcftoolsIndex {
             bin: config.bcftools_bin.clone(),
             threads: config.bcftools_threads,
             vcf: vcf.as_ref().into(),
+            tbi: false,
         }
     }
 }
@@ -384,9 +386,15 @@ impl super::Command for BcftoolsIndex {
 
     /// Returns the shell command that runs `bcftools index`.
     fn cmd(&self) -> String {
+        let format = if self.tbi {
+            "-t "
+        } else {
+            ""
+        };
         format!(
-            "{bin} index --threads {threads} {vcf}",
+            "{bin} index {format}--threads {threads} {vcf}",
             bin = self.bin,
+            format = format,
             threads = self.threads,
             vcf = self.vcf.display()
         )

src/commands/mod.rs

@@ -1,9 +1,9 @@
 pub mod bcftools;
 pub mod dorado;
 // pub mod longphase;
+pub mod longphase;
 pub mod modkit;
 pub mod samtools;
-pub mod longphase;
 // pub mod wakhan;
 
 use std::{
@@ -700,10 +700,8 @@ impl SlurmEpilog {
             }
         }
 
-        let get = |keys: &[&str]| -> Option<String> {
-            keys.iter()
-                .find_map(|k| fields.get(*k).cloned())
-        };
+        let get =
+            |keys: &[&str]| -> Option<String> { keys.iter().find_map(|k| fields.get(*k).cloned()) };
 
         let (user, group) = get(&["user/group"])
             .and_then(|s| {
@@ -713,20 +711,21 @@ impl SlurmEpilog {
             .unwrap_or_default();
 
         Some(SlurmEpilog {
-            job_id:            get(&["job id", "jobid"]).unwrap_or_default(),
-            cluster:           get(&["cluster"]).unwrap_or_default(),
+            job_id: get(&["job id", "jobid"]).unwrap_or_default(),
+            cluster: get(&["cluster"]).unwrap_or_default(),
             user,
             group,
-            nodelist:          get(&["nodelist", "node list"]).unwrap_or_default(),
-            cores:             get(&["cores per node", "cores per task", "cores"])
-                                   .and_then(|v| v.parse().ok())
-                                   .unwrap_or(0),
-            job_started_at:    get(&["job started at", "start time"]).unwrap_or_default(),
-            job_ended_at:      get(&["job ended at", "end time"]).unwrap_or_default(),
-            wall_clock_time:   get(&["job wall-clock time", "wall-clock time", "elapsed"]).unwrap_or_default(),
-            cpu_utilized:      get(&["cpu utilized", "cpu time"]).unwrap_or_default(),
-            cpu_efficiency:    get(&["cpu efficiency"]).unwrap_or_default(),
-            memory_utilized:   get(&["memory utilized", "mem utilized"]).unwrap_or_default(),
+            nodelist: get(&["nodelist", "node list"]).unwrap_or_default(),
+            cores: get(&["cores per node", "cores per task", "cores"])
+                .and_then(|v| v.parse().ok())
+                .unwrap_or(0),
+            job_started_at: get(&["job started at", "start time"]).unwrap_or_default(),
+            job_ended_at: get(&["job ended at", "end time"]).unwrap_or_default(),
+            wall_clock_time: get(&["job wall-clock time", "wall-clock time", "elapsed"])
+                .unwrap_or_default(),
+            cpu_utilized: get(&["cpu utilized", "cpu time"]).unwrap_or_default(),
+            cpu_efficiency: get(&["cpu efficiency"]).unwrap_or_default(),
+            memory_utilized: get(&["memory utilized", "mem utilized"]).unwrap_or_default(),
             memory_efficiency: get(&["memory efficiency", "mem efficiency"]).unwrap_or_default(),
         })
     }
@@ -882,7 +881,7 @@ where
     //     results.push(res);
     // }
 
-    // Rule for the IGR cluster because the admins dont want to implement proper rules so we are 
+    // Rule for the IGR cluster because the admins dont want to implement proper rules so we are
     let max_parallel = config.slurm_max_par;
     let pool = rayon::ThreadPoolBuilder::new()
         .num_threads(max_parallel.into())
@@ -921,8 +920,8 @@ pub trait LocalBatchRunner: Command {
 
         info!("Running local batch job: {job_id}");
 
-        let out_file_handle =
-            File::create(&out_file).with_context(|| format!("failed to create output file: {out_file}"))?;
+        let out_file_handle = File::create(&out_file)
+            .with_context(|| format!("failed to create output file: {out_file}"))?;
 
         let out_file_write = out_file_handle
             .try_clone()
@@ -1005,7 +1004,9 @@ pub trait LocalBatchRunner: Command {
             Ok(())
         });
 
-        let status = child.wait().context("failed to wait on local batch command")?;
+        let status = child
+            .wait()
+            .context("failed to wait on local batch command")?;
 
         let _ = stop_tx.send(());
         match tail_handle.join() {
@@ -1046,9 +1047,9 @@ where
     //     .context("failed to build thread pool")?;
 
     // pool.install(|| {
-        jobs.into_iter()
-            .map(|mut job| LocalBatchRunner::run(&mut job))
-            .collect()
+    jobs.into_iter()
+        .map(|mut job| LocalBatchRunner::run(&mut job))
+        .collect()
     // })
 }
 
@@ -1067,10 +1068,9 @@ macro_rules! run_many {
         } else {
             $crate::commands::run_many_local_batch($jobs)
         }
-    }}
+    }};
 }
 
-
 #[cfg(test)]
 mod tests {
     use super::{Command, SbatchRunner, SlurmParams};

src/commands/samtools.rs

@@ -10,7 +10,11 @@ use log::{debug, info};
 use uuid::Uuid;
 
 use crate::{
-    collection::bam_stats::{QNameSet, WGSBamStats}, commands::{LocalBatchRunner, LocalRunner, SbatchRunner, SlurmParams, SlurmRunner}, config::Config, run, runners::Run
+    collection::bam_stats::{QNameSet, WGSBamStats},
+    commands::{LocalBatchRunner, LocalRunner, SbatchRunner, SlurmParams, SlurmRunner},
+    config::Config,
+    run,
+    runners::Run,
 };
 
 /// Wrapper around a `samtools index` invocation.
@@ -121,16 +125,23 @@ pub struct SamtoolsReheader {
 
 impl super::Command for SamtoolsReheader {
     fn cmd(&self) -> String {
-        // No bash -c wrapper — the runner already provides one.
-        // No --in-place — fails when new header is larger (adding SM tag).
+        let tmp_header = format!("{}.header.sam", self.bam);
+        let tmp_bam = format!("{}.reheader.tmp", self.bam);
+
         format!(
+            // 1. Dump header to temp file
             "{bin} view -H {bam} \
-             | sed \"/^@RG/{{/SM:/!s/$/\\tSM:{sample}/}}\" \
-             | {bin} reheader - {bam} > {bam}.reheader.tmp \
-             && mv {bam}.reheader.tmp {bam}",
+                | sed \"/^@RG/{{s/SM:[^\\t]*/SM:{sample}/; /SM:/!s/$/\\tSM:{sample}/}}\" \
+                > {tmp_header} \
+                && {bin} reheader {tmp_header} {bam} > {tmp_bam} \
+                && mv {tmp_bam} {bam} \
+                && rm -f {tmp_header} \
+                && {bin} index -@ 4 {bam}",
             bin = self.bin,
             bam = self.bam,
             sample = self.sample,
+            tmp_header = tmp_header,
+            tmp_bam = tmp_bam,
         )
     }
 }
@@ -142,7 +153,7 @@ impl super::SlurmRunner for SamtoolsReheader {
     fn slurm_args(&self) -> Vec<String> {
         SlurmParams {
             job_name: Some("samtools_reheader".into()),
-            cpus_per_task: Some(1),
+            cpus_per_task: Some(4),
             mem: Some("4G".into()),
             partition: Some("shortq".into()),
             gres: None,
@@ -155,7 +166,7 @@ impl super::SbatchRunner for SamtoolsReheader {
     fn slurm_params(&self) -> SlurmParams {
         SlurmParams {
             job_name: Some("samtools_reheader".into()),
-            cpus_per_task: Some(1),
+            cpus_per_task: Some(4),
             mem: Some("4G".into()),
             partition: Some("shortq".into()),
             gres: None,
@@ -177,12 +188,12 @@ impl SamtoolsReheader {
 
 impl Run for SamtoolsReheader {
     fn run(&mut self) -> anyhow::Result<()> {
-        if self.slurm {
-            run!(&self.config, self)?;
-            // let _output = SlurmRunner::exec(self)?;
-        } else {
-            let _output = LocalRunner::exec(self)?;
-        }
+        run!(&self.config, self)?;
+        // if self.slurm {
+        //     // let _output = SlurmRunner::exec(self)?;
+        // } else {
+        //     let _output = LocalRunner::exec(self)?;
+        // }
         Ok(())
     }
 }

src/io/bam.rs

@@ -4,7 +4,11 @@ use anyhow::Context;
 use log::{info, warn};
 use rust_htslib::bam::{self, record::Aux, record::Cigar, IndexedReader, Read, Record};
 
-use crate::{commands::samtools::{SamtoolsIndex, SamtoolsReheader}, config::Config, runners::Run};
+use crate::{
+    commands::samtools::{SamtoolsIndex, SamtoolsReheader},
+    config::Config,
+    runners::Run,
+};
 
 /// Parses an SA tag string and extracts chromosome and position information.
 ///
@@ -797,41 +801,58 @@ pub fn read_sm_tag_or_inject(
     let header = bam::Header::from_template(reader.header());
     let header_text = String::from_utf8_lossy(&header.to_bytes()).to_string();
 
-    let mut first_sm: Option<String> = None;
+    let mut sm_values: Vec<String> = Vec::new();
     let mut all_have_sm = true;
 
     for line in header_text.lines() {
         if line.starts_with("@RG") {
-            let sm = line.split('\t')
-                .find_map(|f| f.strip_prefix("SM:"))
-                .map(|s| s.to_string());
-            if sm.is_none() {
-                all_have_sm = false;
-            } else if first_sm.is_none() {
-                first_sm = sm;
+            match line
+                .split('\t')
+                .find_map(|f| f.strip_prefix("SM:").map(|s| s.to_string()))
+            {
+                Some(sm) => sm_values.push(sm),
+                None => all_have_sm = false,
             }
         }
     }
 
-    if !all_have_sm {
-        // At least one @RG line missing SM — inject into those
-        info!("Some @RG lines in {bam_path} lack SM tag, injecting SM:{fallback_sample}");
+    // Determine whether reheadering is needed:
+    // 1. Any @RG missing SM
+    // 2. SM values are not all identical
+    // 3. No @RG lines at all
+    let unique_sm: std::collections::HashSet<&str> = sm_values.iter().map(|s| s.as_str()).collect();
 
-        // let original_mtime = filetime::FileTime::from_last_modification_time(
-        //     &std::fs::metadata(bam_path)?,
-        // );
-        //
-        // let mut reheader = SamtoolsReheader::from_config(config, bam_path, fallback_sample);
-        // reheader.run()?;
+    let needs_reheader = !all_have_sm || unique_sm.len() > 1;
+
+    if needs_reheader {
+        if !all_have_sm {
+            info!("Some @RG lines in {bam_path} lack SM tag — injecting SM:{fallback_sample}");
+        }
+        if unique_sm.len() > 1 {
+            info!(
+                "Multiple distinct SM values in {bam_path} ({:?}) — collapsing to SM:{fallback_sample}",
+                unique_sm
+            );
+        }
+
+        let original_mtime =
+            filetime::FileTime::from_last_modification_time(&std::fs::metadata(bam_path)?);
+
+        let mut reheader = SamtoolsReheader::from_config(config, bam_path, fallback_sample);
+        reheader.run()?;
         // let mut index = SamtoolsIndex::from_config(config, bam_path);
         // index.run()?;
-        //
-        // filetime::set_file_mtime(bam_path, original_mtime)?;
 
-        return Ok(first_sm.unwrap_or_else(|| fallback_sample.to_string()));
+        filetime::set_file_mtime(bam_path, original_mtime)?;
+
+        return Ok(fallback_sample.to_string());
     }
 
-    first_sm.context(format!("No @RG lines found in {bam_path}"))
+    // All @RG lines present and SM is uniform — return the single value
+    sm_values
+        .into_iter()
+        .next()
+        .context(format!("No @RG lines found in {bam_path}"))
 }
 
 #[cfg(test)]
@@ -844,7 +865,7 @@ mod tests {
         test_init();
         let config = Config::default();
 
-        read_sm_tag_or_inject(&config.tumoral_bam("CHAHA"), "CHAHA_diag", &config)?;
+        read_sm_tag_or_inject(&config.tumoral_bam("CHALO"), "CHALO_diag", &config)?;
         Ok(())
     }
 }