somatic pipeline should run added bam modification trigger

src/pipes/somatic.rs

@@ -171,13 +171,14 @@ impl Initialize for SomaticPipe {
 }
 
 impl ShouldRun for SomaticPipe {
-
     fn should_run(&self) -> bool {
         // path to the existing “.bit” file
-        let bit_path = self
-            .config
-            .tumoral_dir(&self.id)
-            .join(format!("{}_somatic_variants.bit", self.id));
+        let tumoral_dir = self.config.tumoral_dir(&self.id);
+        let bit_path = format!("{}/{}_somatic_variants.bit", tumoral_dir, self.id);
+        // let bit_path = self
+        //     .config
+        //     .tumoral_dir(&self.id)
+        //     .join(format!("{}_somatic_variants.bit", self.id));
 
         // if we can’t read its modification time, re-run
         let res_meta = match fs::metadata(&bit_path).and_then(|m| m.modified()) {
@@ -186,8 +187,10 @@ impl ShouldRun for SomaticPipe {
         };
 
         // if *either* BAM is newer than the .bit, or we can’t stat it, re-run
-        [ self.config.normal_bam(&self.id),
-          self.config.tumoral_bam(&self.id) ]
+        [
+            self.config.normal_bam(&self.id),
+            self.config.tumoral_bam(&self.id),
+        ]
         .iter()
         .any(|bam| {
             fs::metadata(bam)