from_fc

src/commands/dorado.rs

@@ -443,6 +443,13 @@ impl Dorado {
     }
 
     pub fn from_flowcell(flowcell: &FlowCell, config: &Config) -> anyhow::Result<()> {
+        let tp_conv = |time_point: &str| -> String {
+            match time_point {
+                "normal" => config.normal_name.clone(),
+                "tumoral" => config.tumoral_name.clone(),
+                _ => panic!("Error time point name")
+            }
+        };
         use crate::collection::flowcells::FlowCellLocation::*;
         let base_pod_dir = match &flowcell.location {
             Local(_) => None,
@@ -474,7 +481,7 @@ impl Dorado {
                     .iter()
                     .map(|c| FlowCellCase {
                         id: c.case_id.clone(),
-                        time_point: c.sample_type.clone(),
+                        time_point: tp_conv(&c.sample_type),
                         barcode: c.barcode.clone(),
                         pod_dir: pod_dir.clone().into(),
                     })
@@ -496,7 +503,7 @@ impl Dorado {
                     let mut d = Dorado::init(
                         FlowCellCase {
                             id: c.case_id.clone(),
-                            time_point: c.sample_type.clone(),
+                            time_point: tp_conv(&c.sample_type),
                             barcode: c.barcode.clone(),
                             pod_dir: pod_dir.into(),
                         },