 Thomas
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d6250eeae7
coral
|
4 giorni fa |
|
Thomas
|
9ddb488f87
robuster epilog parsing
|
6 giorni fa |
|
Thomas
|
22d9b9f29d
savana_mem for slurm max mem
|
6 giorni fa |
|
Thomas
|
f216c34dce
reduced clairS threads; added slurm_max_par default: 10; use of run! and run_many! in bam import
|
1 settimana fa |
|
Thomas
|
27489a85bc
config;panel_bam
|
1 settimana fa |
|
Thomas
|
069f6f8b38
Added GATK mutect2
|
2 mesi fa |
|
Thomas
|
66faf6060c
upgraded jobs names with part index
|
3 mesi fa |
|
Thomas
|
d17bbe3ad5
limit clairs threads
|
3 mesi fa |
|
Thomas
|
0278ed4c64
improved somatic pipe
|
3 mesi fa |
|
Thomas
|
035d9d3741
config: added IGV and viz required files
|
3 mesi fa |
|
Thomas
|
b2f8ba29dd
config: added db_snp
|
3 mesi fa |
|
Thomas
|
7ba042df8d
update
|
3 mesi fa |
|
Thomas
|
5aabb5de5b
dict file
|
4 mesi fa |
|
Thomas
|
6f12252396
prom runs
|
4 mesi fa |
|
Thomas
|
fbb733ef00
prom runs
|
4 mesi fa |
|
Thomas
|
c3b5e356bf
echtvar
|
4 mesi fa |
|
Thomas
|
30faf74aa1
nanomonsv MA
|
4 mesi fa |
|
Thomas
|
244ff9366f
nanomonsv MA
|
4 mesi fa |
|
Thomas
|
081a1b411b
straglr somatic change
|
4 mesi fa |
|
Thomas
|
8e7e1df6bc
Update callers and config
|
4 mesi fa |
|
Thomas
|
a020475b87
fbinv
|
4 mesi fa |
|
Thomas
|
9db8c5ef4b
all callers implemented for slurm. testing in progress
|
4 mesi fa |
|
Thomas
|
b135d60d4e
callers
|
4 mesi fa |
|
Thomas
|
848e7845ba
deep_somatic update
|
4 mesi fa |
|
Thomas
|
5e4e7c0275
run and run_many macro
|
4 mesi fa |
|
Thomas
|
8b2c676daf
up
|
4 mesi fa |
|
Thomas
|
78f31bc229
PromRun
|
4 mesi fa |
|
Thomas
|
6c52a16a21
SamtoolsMergeMany, slurm_pipe/import upate
|
4 mesi fa |
|
Thomas
|
8dd3c41065
DeepVariant upate
|
4 mesi fa |
|
Thomas
|
0409a892e8
ClairS slurm
|
5 mesi fa |
