 Thomas
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4bbbc66981
Introducing new executor that takes a Vec<Vec<AnyJob>> and treat the inner vec as a sequence.jobs_seq![..] helps to define this sequence from any job that implement LocalRunner and SbatchRunner. ClairS implementation and new resume chunked (TODO: add clairs_allow_resume in config.
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vor 1 Monat |
|
Thomas
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bf12d05d90
longcallD
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vor 1 Monat |
|
Thomas
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3e63458572
merge
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vor 1 Monat |
|
Thomas
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dcd1aa64f7
assembler pipe with recursion
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vor 1 Monat |
|
Thomas
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44067c4310
assembler pipe
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vor 1 Monat |
|
Thomas
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b85b028475
coral
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vor 1 Monat |
|
Thomas
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d6250eeae7
coral
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vor 1 Monat |
|
Thomas
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9ddb488f87
robuster epilog parsing
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vor 1 Monat |
|
Thomas
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22d9b9f29d
savana_mem for slurm max mem
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vor 1 Monat |
|
Thomas
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f216c34dce
reduced clairS threads; added slurm_max_par default: 10; use of run! and run_many! in bam import
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vor 1 Monat |
|
Thomas
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27489a85bc
config;panel_bam
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vor 1 Monat |
|
Thomas
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069f6f8b38
Added GATK mutect2
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vor 3 Monaten |
|
Thomas
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66faf6060c
upgraded jobs names with part index
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vor 4 Monaten |
|
Thomas
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d17bbe3ad5
limit clairs threads
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vor 4 Monaten |
|
Thomas
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0278ed4c64
improved somatic pipe
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vor 5 Monaten |
|
Thomas
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035d9d3741
config: added IGV and viz required files
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vor 5 Monaten |
|
Thomas
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b2f8ba29dd
config: added db_snp
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vor 5 Monaten |
|
Thomas
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7ba042df8d
update
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vor 5 Monaten |
|
Thomas
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5aabb5de5b
dict file
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vor 5 Monaten |
|
Thomas
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6f12252396
prom runs
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vor 5 Monaten |
|
Thomas
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fbb733ef00
prom runs
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vor 5 Monaten |
|
Thomas
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c3b5e356bf
echtvar
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vor 5 Monaten |
|
Thomas
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30faf74aa1
nanomonsv MA
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vor 5 Monaten |
|
Thomas
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244ff9366f
nanomonsv MA
|
vor 6 Monaten |
|
Thomas
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081a1b411b
straglr somatic change
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vor 6 Monaten |
|
Thomas
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8e7e1df6bc
Update callers and config
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vor 6 Monaten |
|
Thomas
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a020475b87
fbinv
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vor 6 Monaten |
|
Thomas
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9db8c5ef4b
all callers implemented for slurm. testing in progress
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vor 6 Monaten |
|
Thomas
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b135d60d4e
callers
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vor 6 Monaten |
|
Thomas
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848e7845ba
deep_somatic update
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vor 6 Monaten |
