 Thomas
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2a7460a44d
dbsnp parse even if no FREQ and echtvar use exec_jobs
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9 tuntia sitten |
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Thomas
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65a90d09ee
dbsnp
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10 tuntia sitten |
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Thomas
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e454674804
todo: dbsnp doesnt report that
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12 tuntia sitten |
 STEIMLE Thomas
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c3d27c4862
pandora file reader now accept any reader with Trait
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17 tuntia sitten |
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Thomas
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2372c77e2b
small modif
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18 tuntia sitten |
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Thomas
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3c15a2820a
bam annotation par
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4 päivää sitten |
|
Thomas
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f11370f0cf
gatk modif to use exec multiple jobs
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1 viikko sitten |
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STEIMLE Thomas
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66b85fb388
Representation
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2 viikkoa sitten |
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STEIMLE Thomas
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a607deb4ca
pandora container doc
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2 viikkoa sitten |
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STEIMLE Thomas
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b28f23a056
refine somatic pandora output
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2 viikkoa sitten |
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STEIMLE Thomas
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ff6cea3cb3
Use local Cargo config for Windows htslib patches
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2 viikkoa sitten |
|
Thomas
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334057b7e1
merge
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2 viikkoa sitten |
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STEIMLE Thomas
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1fcf1c5c22
Apply formatting cleanup
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2 viikkoa sitten |
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STEIMLE Thomas
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52d9e6486b
Add block-compressed Pandora variant index
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2 viikkoa sitten |
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STEIMLE Thomas
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fdc969a486
Add Pandora reader and Windows curl patch
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2 viikkoa sitten |
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STEIMLE Thomas
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87009c3474
Add Pandora SomaticPipe output container
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2 viikkoa sitten |
|
Thomas
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4bbbc66981
Introducing new executor that takes a Vec<Vec<AnyJob>> and treat the inner vec as a sequence.jobs_seq![..] helps to define this sequence from any job that implement LocalRunner and SbatchRunner. ClairS implementation and new resume chunked (TODO: add clairs_allow_resume in config.
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1 kuukausi sitten |
|
Thomas
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1c81c5bf58
update longcallD merge BAM
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1 kuukausi sitten |
|
Thomas
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bf12d05d90
longcallD
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1 kuukausi sitten |
|
Thomas
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3ea0a26d87
multiallelic normalization (just for INFO FREQ of dbsnp) for fetch_vcf, prefer normalized vcf...
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1 kuukausi sitten |
|
Thomas
|
a0f6db44b0
multiallelic normalization (just for INFO FREQ of dbsnp) for fetch_vcf, prefer normalized vcf...
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1 kuukausi sitten |
|
Thomas
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a1ab3e9dc6
dbg
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1 kuukausi sitten |
|
Thomas
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f685632548
dbg
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1 kuukausi sitten |
|
Thomas
|
3e63458572
merge
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1 kuukausi sitten |
|
Thomas
|
7abe30225b
ok
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1 kuukausi sitten |
|
Thomas
|
e8875b045d
audit io helpers
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1 kuukausi sitten |
|
Thomas
|
bd5f0f912a
fix vcf_variant.rs: liftover position overflow and redundant allocation
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1 kuukausi sitten |
|
Thomas
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80432a5436
fix three bugs in variant module
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1 kuukausi sitten |
|
Thomas
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9fe2d09789
fix variant duplication bug in Variants::merge
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1 kuukausi sitten |
|
Thomas
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e4ef7537d2
add //! module header to io/mod.rs; fix fastq.rs buffering
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1 kuukausi sitten |
