 Thomas
|
3e63458572
merge
|
1 mese fa |
|
Thomas
|
e8875b045d
audit io helpers
|
1 mese fa |
|
Thomas
|
bd93786500
refactor and audit src/io/bam.rs
|
1 mese fa |
|
Thomas
|
dcd1aa64f7
assembler pipe with recursion
|
1 mese fa |
|
Thomas
|
dce4a111cc
nanomonsv -> mediumq; GATK ok
|
1 mese fa |
|
Thomas
|
caee96be9e
scan remove chrM
|
3 mesi fa |
|
Thomas
|
fd1dc2c8df
sm tags modif
|
3 mesi fa |
|
Thomas
|
63632f0b37
keep ancient mtime when modifying BAM header for adding SM tag in Mutect2
|
3 mesi fa |
|
Thomas
|
83f7501240
bug: GATK mutect2 use SM tag but no tag if no barcode by dorado. solution: add sm tag and reheader
|
3 mesi fa |
|
Thomas
|
4690b66eea
bug: GATK mutect2 SM tag in normal bam not corresponding to sample_name in CMD line. solution: parse SM tag and use it as sample_name. caveat: no verification vbut as long names are generic and attributed by ssystem ok/
|
3 mesi fa |
|
Thomas
|
fc28b7c1a7
m
|
4 mesi fa |
|
Thomas
|
a020475b87
fbinv
|
6 mesi fa |
|
Thomas
|
0409a892e8
ClairS slurm
|
6 mesi fa |
|
Thomas
|
1cb6ad7442
gff + scan
|
1 anno fa |
