 Thomas
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4848af2a3a
better gatk
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пре 4 дана |
|
Thomas
|
dce4a111cc
nanomonsv -> mediumq; GATK ok
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пре 5 дана |
|
Thomas
|
9ddb488f87
robuster epilog parsing
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пре 6 дана |
|
Thomas
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22d9b9f29d
savana_mem for slurm max mem
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пре 6 дана |
|
Thomas
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f216c34dce
reduced clairS threads; added slurm_max_par default: 10; use of run! and run_many! in bam import
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пре 1 недеља |
|
Thomas
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27489a85bc
config;panel_bam
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пре 1 недеља |
|
Thomas
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a631c652db
Infos.freq_maf()
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пре 2 недеља |
|
Thomas
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9e3c086a44
Infos fields for dbSNP
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пре 2 недеља |
|
Thomas
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fe19eb6036
scan remove chrM
|
пре 1 месец |
|
Thomas
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caee96be9e
scan remove chrM
|
пре 1 месец |
|
Thomas
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96474698f0
scan remove chrM
|
пре 1 месец |
|
Thomas
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841fa84fa2
unactivate reheader
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пре 1 месец |
|
Thomas
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947fe471aa
save_into_lifted for Variants
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пре 2 месеци |
|
Thomas
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fd1dc2c8df
sm tags modif
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пре 2 месеци |
|
Thomas
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63632f0b37
keep ancient mtime when modifying BAM header for adding SM tag in Mutect2
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пре 2 месеци |
|
Thomas
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0ee77e1f7c
adding SM tag on BAM header during impory
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пре 2 месеци |
|
Thomas
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83f7501240
bug: GATK mutect2 use SM tag but no tag if no barcode by dorado. solution: add sm tag and reheader
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пре 2 месеци |
|
Thomas
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4690b66eea
bug: GATK mutect2 SM tag in normal bam not corresponding to sample_name in CMD line. solution: parse SM tag and use it as sample_name. caveat: no verification vbut as long names are generic and attributed by ssystem ok/
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пре 2 месеци |
|
Thomas
|
069f6f8b38
Added GATK mutect2
|
пре 2 месеци |
|
Thomas
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73775d23a0
clean
|
пре 2 месеци |
|
Thomas
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94e3fdb614
clean
|
пре 2 месеци |
|
Thomas
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5133ac3efd
liftover
|
пре 2 месеци |
|
Thomas
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6422cbd96f
m
|
пре 3 месеци |
|
Thomas
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e5838fa74e
lim s batch para
|
пре 3 месеци |
|
Thomas
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48a6cb89db
upated straglr job_name to refelct the sample and part
|
пре 3 месеци |
|
Thomas
|
aad235db3d
upated straglr job_name to refelct the sample and part
|
пре 3 месеци |
|
Thomas
|
354d5c9a42
upated straglr job_name to refelct the sample and part
|
пре 3 месеци |
|
Thomas
|
fc28b7c1a7
m
|
пре 3 месеци |
|
Thomas
|
1ce719023c
better concurrency in job execution
|
пре 3 месеци |
|
Thomas
|
6a81179dfb
added SomaticScan in callers pipe
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пре 3 месеци |
