 Thomas
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708d1fefb3
INSERTION depth wrong
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hai 6 meses |
|
Thomas
|
5d43d529e8
better bam_compo // WGSBamStats
|
hai 7 meses |
|
Thomas
|
929c95c2d3
is file older now remove dir if so// DeepSomatic passed vcf path was wronggly pointing into DeepVariant mrd folder // nanomonsv is file older now check mrd and passed diag if older of respective bam
|
hai 8 meses |
|
Thomas
|
def4247123
DUPLICATION not for serverus
|
hai 9 meses |
|
Thomas
|
418c754b01
DUPLICATION
|
hai 9 meses |
|
Thomas
|
0e1603298a
flowcells sort by modified
|
hai 9 meses |
|
Thomas
|
cf7c41a98c
dorardo up and emit-moves
|
hai 9 meses |
|
Thomas
|
b28a6f37b0
savana alt/depth from info, added n_alt_depth for info and above for vcf_variant
|
hai 10 meses |
|
Thomas
|
cc0ef4fcbe
Bug deletion desc when coming from BNDdesc
|
hai 10 meses |
|
Thomas
|
3604b225cf
BND to del
|
hai 10 meses |
|
Thomas
|
e8b86f0d83
annot repeatmasker
|
hai 10 meses |
|
Thomas
|
74c6f4da7b
bam alt/depth
|
hai 10 meses |
|
Thomas
|
a4df568492
bedrow overlaps par
|
hai 10 meses |
|
Thomas
|
17e88bd514
deletion desc n alt depth
|
hai 10 meses |
|
Thomas
|
5a323d50bc
clearer parse bnddesc
|
hai 10 meses |
|
Thomas
|
6054343630
group_variants_by_bnd_rc
|
hai 10 meses |
|
Thomas
|
3eeb7b514b
group_variants_by_bnd_desc
|
hai 10 meses |
|
Thomas
|
c69dcf818c
filter mapq
|
hai 10 meses |
|
Thomas
|
1a306f5e24
BNDdesc with BNDGraph // Scan verify if bam exists // depth at
|
hai 10 meses |
|
Thomas
|
ec89a0e159
Flowcells save gz
|
hai 11 meses |
|
Thomas
|
7911999078
Flowcells / MinKnow csv
|
hai 11 meses |
|
Thomas
|
cd352ede53
VCF write
|
hai 11 meses |
|
Thomas
|
8448c00e0d
deletions_len
|
hai 11 meses |
|
Thomas
|
fb515b9bd7
get_alteration_cats
|
hai 11 meses |
|
Thomas
|
4c5672cc47
stats + callers() + bed compare
|
hai 11 meses |
|
Thomas
|
23d0e0ea17
Trinucleotides and Early/Late annotations
|
hai 11 meses |
|
Thomas
|
a5880b4b84
caller bug // callers shoud run info // remove_dir_if_exists
|
hai 11 meses |
|
Thomas
|
0b6f1f3ffe
working scan no mem leaks because of pileup
|
hai 11 meses |
|
Thomas
|
980c173f72
variants rates + ncbi versions
|
hai 11 meses |
|
Thomas
|
9d84177b64
gz_writer + variants_stats + high depth ranges + BinCount depths + Bin depths
|
hai 11 meses |
