 Thomas
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96474698f0
scan remove chrM
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пре 1 недеља |
|
Thomas
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841fa84fa2
unactivate reheader
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пре 1 недеља |
|
Thomas
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947fe471aa
save_into_lifted for Variants
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пре 3 недеља |
|
Thomas
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fd1dc2c8df
sm tags modif
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пре 3 недеља |
|
Thomas
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63632f0b37
keep ancient mtime when modifying BAM header for adding SM tag in Mutect2
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пре 3 недеља |
|
Thomas
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0ee77e1f7c
adding SM tag on BAM header during impory
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пре 3 недеља |
|
Thomas
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83f7501240
bug: GATK mutect2 use SM tag but no tag if no barcode by dorado. solution: add sm tag and reheader
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пре 3 недеља |
|
Thomas
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4690b66eea
bug: GATK mutect2 SM tag in normal bam not corresponding to sample_name in CMD line. solution: parse SM tag and use it as sample_name. caveat: no verification vbut as long names are generic and attributed by ssystem ok/
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пре 3 недеља |
|
Thomas
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069f6f8b38
Added GATK mutect2
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пре 3 недеља |
|
Thomas
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73775d23a0
clean
|
пре 1 месец |
|
Thomas
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94e3fdb614
clean
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пре 1 месец |
|
Thomas
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5133ac3efd
liftover
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пре 1 месец |
|
Thomas
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6422cbd96f
m
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пре 1 месец |
|
Thomas
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e5838fa74e
lim s batch para
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пре 1 месец |
|
Thomas
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48a6cb89db
upated straglr job_name to refelct the sample and part
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пре 1 месец |
|
Thomas
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aad235db3d
upated straglr job_name to refelct the sample and part
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пре 1 месец |
|
Thomas
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354d5c9a42
upated straglr job_name to refelct the sample and part
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пре 1 месец |
|
Thomas
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fc28b7c1a7
m
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пре 1 месец |
|
Thomas
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1ce719023c
better concurrency in job execution
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пре 1 месец |
|
Thomas
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6a81179dfb
added SomaticScan in callers pipe
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пре 1 месец |
|
Thomas
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538e30df2e
added should_run for LongphaseHap run
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пре 1 месец |
|
Thomas
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72159af3ec
bug HP bam double suffixe
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пре 1 месец |
|
Thomas
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66faf6060c
upgraded jobs names with part index
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пре 1 месец |
|
Thomas
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95062589e6
limit clairs mem
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пре 1 месец |
|
Thomas
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d17bbe3ad5
limit clairs threads
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пре 1 месец |
|
Thomas
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a6e037983f
limit max sbatch in paral for run_many_sbatch
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пре 1 месец |
|
Thomas
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93f5594588
rm lock in chunked run fn
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пре 1 месец |
|
Thomas
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85fae9dc92
should_run befor lock
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пре 1 месец |
|
Thomas
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30c12c86c4
Repat annoation
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пре 1 месец |
|
Thomas
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c2301c5f98
one source of hash
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пре 1 месец |
