 Thomas
|
a1ab3e9dc6
dbg
|
1 月之前 |
|
Thomas
|
f685632548
dbg
|
1 月之前 |
|
Thomas
|
3e63458572
merge
|
1 月之前 |
|
Thomas
|
7abe30225b
ok
|
1 月之前 |
|
Thomas
|
e8875b045d
audit io helpers
|
1 月之前 |
|
Thomas
|
bd5f0f912a
fix vcf_variant.rs: liftover position overflow and redundant allocation
|
1 月之前 |
|
Thomas
|
80432a5436
fix three bugs in variant module
|
1 月之前 |
|
Thomas
|
9fe2d09789
fix variant duplication bug in Variants::merge
|
1 月之前 |
|
Thomas
|
e4ef7537d2
add //! module header to io/mod.rs; fix fastq.rs buffering
|
1 月之前 |
|
Thomas
|
2d9b97dcea
fix and audit fasta.rs, gff.rs, liftover.rs
|
1 月之前 |
|
Thomas
|
f3d94897a1
audit and refactor src/io/pod5_infos.rs
|
1 月之前 |
|
Thomas
|
11ec9f65cd
fix and audit src/io/straglr.rs
|
1 月之前 |
|
Thomas
|
e55bc1d745
ditch csv crate from all non-serde paths
|
1 月之前 |
|
Thomas
|
8198808748
replace csv::ByteRecord + tsv_reader with TsvLine in scan and variants
|
1 月之前 |
|
Thomas
|
f1212b39b4
refactor modkit.rs: drop full-file load, use tabix per-region fetch
|
1 月之前 |
|
Thomas
|
7ce17964e9
audit and refactor src/io/modkit.rs
|
1 月之前 |
|
Thomas
|
1b42565a2f
fix vcf.rs module doc: add fetch_vcf to header table
|
1 月之前 |
|
Thomas
|
8806fc5b0a
add tabix region fetch: fetch_tabix_lines_with, fetch_bed, fetch_vcf
|
1 月之前 |
|
Thomas
|
bceb3174ad
audit and refactor src/io/vcf.rs
|
1 月之前 |
|
Thomas
|
15224fb822
enforce tabix sort order in BgzTabixWriter::write_record
|
1 月之前 |
|
Thomas
|
d2b910af0b
add BgzTabixWriter with IndexFormat enum and refactor convert_bgz_with_tabix
|
1 月之前 |
|
Thomas
|
c3934a3c28
fix atomic BGZF write in readers.rs and writers.rs using TempFileGuard
|
1 月之前 |
|
Thomas
|
f2572964e4
audit and fix src/io/readers.rs
|
1 月之前 |
|
Thomas
|
4dde55f778
audit and fix src/io/bed.rs
|
1 月之前 |
|
Thomas
|
bd93786500
refactor and audit src/io/bam.rs
|
1 月之前 |
|
Thomas
|
dcd1aa64f7
assembler pipe with recursion
|
1 月之前 |
|
Thomas
|
44067c4310
assembler pipe
|
1 月之前 |
|
Thomas
|
b85b028475
coral
|
1 月之前 |
|
Thomas
|
15bce449b8
new bgz writer remove BGZIP crate cause of error writing big bgzip files
|
1 月之前 |
|
Thomas
|
871e6e4129
scan
|
1 月之前 |
