 Thomas
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bd93786500
refactor and audit src/io/bam.rs
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1 month ago |
|
Thomas
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dcd1aa64f7
assembler pipe with recursion
|
1 month ago |
|
Thomas
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44067c4310
assembler pipe
|
1 month ago |
|
Thomas
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b85b028475
coral
|
1 month ago |
|
Thomas
|
15bce449b8
new bgz writer remove BGZIP crate cause of error writing big bgzip files
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1 month ago |
|
Thomas
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871e6e4129
scan
|
1 month ago |
|
Thomas
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49c56654c3
scan
|
1 month ago |
|
Thomas
|
09c26b3b2c
scan
|
1 month ago |
|
Thomas
|
d6250eeae7
coral
|
1 month ago |
|
Thomas
|
37eef933cf
better scan
|
1 month ago |
|
Thomas
|
6d4dfaf4ad
better scan
|
1 month ago |
|
Thomas
|
9681be650f
better scan
|
1 month ago |
|
Thomas
|
9183f25a61
better scan
|
1 month ago |
|
Thomas
|
70dc1304d2
better scan
|
1 month ago |
|
Thomas
|
4848af2a3a
better gatk
|
1 month ago |
|
Thomas
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dce4a111cc
nanomonsv -> mediumq; GATK ok
|
1 month ago |
|
Thomas
|
9ddb488f87
robuster epilog parsing
|
1 month ago |
|
Thomas
|
22d9b9f29d
savana_mem for slurm max mem
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1 month ago |
|
Thomas
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f216c34dce
reduced clairS threads; added slurm_max_par default: 10; use of run! and run_many! in bam import
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1 month ago |
|
Thomas
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27489a85bc
config;panel_bam
|
1 month ago |
|
Thomas
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a631c652db
Infos.freq_maf()
|
1 month ago |
|
Thomas
|
9e3c086a44
Infos fields for dbSNP
|
1 month ago |
|
Thomas
|
fe19eb6036
scan remove chrM
|
3 months ago |
|
Thomas
|
caee96be9e
scan remove chrM
|
3 months ago |
|
Thomas
|
96474698f0
scan remove chrM
|
3 months ago |
|
Thomas
|
841fa84fa2
unactivate reheader
|
3 months ago |
|
Thomas
|
947fe471aa
save_into_lifted for Variants
|
3 months ago |
|
Thomas
|
fd1dc2c8df
sm tags modif
|
3 months ago |
|
Thomas
|
63632f0b37
keep ancient mtime when modifying BAM header for adding SM tag in Mutect2
|
3 months ago |
|
Thomas
|
0ee77e1f7c
adding SM tag on BAM header during impory
|
3 months ago |
