 Thomas
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be50e652d3
uniqueness update with RC
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hace 1 mes |
|
Thomas
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3d0a9c7f9c
uniqueness update with RC
|
hace 1 mes |
|
Thomas
|
d4f245d08f
Removed run_many! from deep_somatic;rs
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hace 1 mes |
|
Thomas
|
f300248541
FaiReader TabixReader
|
hace 1 mes |
|
Thomas
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43e3164ef5
FaiReader TabixReader
|
hace 1 mes |
|
Thomas
|
3fc08272ad
nanomonsv norm
|
hace 1 mes |
|
Thomas
|
24d129c5a8
colorsdb update
|
hace 1 mes |
|
Thomas
|
0aaeaf8ce8
colorsdb annotation
|
hace 1 mes |
|
Thomas
|
2a7460a44d
dbsnp parse even if no FREQ and echtvar use exec_jobs
|
hace 1 mes |
|
Thomas
|
65a90d09ee
dbsnp
|
hace 1 mes |
|
Thomas
|
e454674804
todo: dbsnp doesnt report that
|
hace 1 mes |
 STEIMLE Thomas
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c3d27c4862
pandora file reader now accept any reader with Trait
|
hace 1 mes |
|
Thomas
|
2372c77e2b
small modif
|
hace 1 mes |
|
Thomas
|
3c15a2820a
bam annotation par
|
hace 1 mes |
|
Thomas
|
f11370f0cf
gatk modif to use exec multiple jobs
|
hace 1 mes |
|
STEIMLE Thomas
|
66b85fb388
Representation
|
hace 1 mes |
|
STEIMLE Thomas
|
a607deb4ca
pandora container doc
|
hace 2 meses |
|
STEIMLE Thomas
|
b28f23a056
refine somatic pandora output
|
hace 2 meses |
|
STEIMLE Thomas
|
ff6cea3cb3
Use local Cargo config for Windows htslib patches
|
hace 2 meses |
|
Thomas
|
334057b7e1
merge
|
hace 2 meses |
|
STEIMLE Thomas
|
1fcf1c5c22
Apply formatting cleanup
|
hace 2 meses |
|
STEIMLE Thomas
|
52d9e6486b
Add block-compressed Pandora variant index
|
hace 2 meses |
|
STEIMLE Thomas
|
fdc969a486
Add Pandora reader and Windows curl patch
|
hace 2 meses |
|
STEIMLE Thomas
|
87009c3474
Add Pandora SomaticPipe output container
|
hace 2 meses |
|
Thomas
|
4bbbc66981
Introducing new executor that takes a Vec<Vec<AnyJob>> and treat the inner vec as a sequence.jobs_seq![..] helps to define this sequence from any job that implement LocalRunner and SbatchRunner. ClairS implementation and new resume chunked (TODO: add clairs_allow_resume in config.
|
hace 2 meses |
|
Thomas
|
1c81c5bf58
update longcallD merge BAM
|
hace 2 meses |
|
Thomas
|
bf12d05d90
longcallD
|
hace 2 meses |
|
Thomas
|
3ea0a26d87
multiallelic normalization (just for INFO FREQ of dbsnp) for fetch_vcf, prefer normalized vcf...
|
hace 2 meses |
|
Thomas
|
a0f6db44b0
multiallelic normalization (just for INFO FREQ of dbsnp) for fetch_vcf, prefer normalized vcf...
|
hace 2 meses |
|
Thomas
|
a1ab3e9dc6
dbg
|
hace 2 meses |
