 STEIMLE Thomas
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c3d27c4862
pandora file reader now accept any reader with Trait
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18 ore fa |
 Thomas
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2372c77e2b
small modif
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19 ore fa |
|
Thomas
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3c15a2820a
bam annotation par
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4 giorni fa |
|
Thomas
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f11370f0cf
gatk modif to use exec multiple jobs
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1 settimana fa |
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STEIMLE Thomas
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66b85fb388
Representation
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2 settimane fa |
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STEIMLE Thomas
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a607deb4ca
pandora container doc
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2 settimane fa |
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STEIMLE Thomas
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b28f23a056
refine somatic pandora output
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2 settimane fa |
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STEIMLE Thomas
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ff6cea3cb3
Use local Cargo config for Windows htslib patches
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2 settimane fa |
|
Thomas
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334057b7e1
merge
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2 settimane fa |
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STEIMLE Thomas
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1fcf1c5c22
Apply formatting cleanup
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2 settimane fa |
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STEIMLE Thomas
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52d9e6486b
Add block-compressed Pandora variant index
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2 settimane fa |
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STEIMLE Thomas
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fdc969a486
Add Pandora reader and Windows curl patch
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2 settimane fa |
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STEIMLE Thomas
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87009c3474
Add Pandora SomaticPipe output container
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2 settimane fa |
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Thomas
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4bbbc66981
Introducing new executor that takes a Vec<Vec<AnyJob>> and treat the inner vec as a sequence.jobs_seq![..] helps to define this sequence from any job that implement LocalRunner and SbatchRunner. ClairS implementation and new resume chunked (TODO: add clairs_allow_resume in config.
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1 mese fa |
|
Thomas
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1c81c5bf58
update longcallD merge BAM
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1 mese fa |
|
Thomas
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bf12d05d90
longcallD
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1 mese fa |
|
Thomas
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3ea0a26d87
multiallelic normalization (just for INFO FREQ of dbsnp) for fetch_vcf, prefer normalized vcf...
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1 mese fa |
|
Thomas
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a0f6db44b0
multiallelic normalization (just for INFO FREQ of dbsnp) for fetch_vcf, prefer normalized vcf...
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1 mese fa |
|
Thomas
|
a1ab3e9dc6
dbg
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1 mese fa |
|
Thomas
|
f685632548
dbg
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1 mese fa |
|
Thomas
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3e63458572
merge
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1 mese fa |
|
Thomas
|
7abe30225b
ok
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1 mese fa |
|
Thomas
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e8875b045d
audit io helpers
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1 mese fa |
|
Thomas
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bd5f0f912a
fix vcf_variant.rs: liftover position overflow and redundant allocation
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1 mese fa |
|
Thomas
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80432a5436
fix three bugs in variant module
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1 mese fa |
|
Thomas
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9fe2d09789
fix variant duplication bug in Variants::merge
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1 mese fa |
|
Thomas
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e4ef7537d2
add //! module header to io/mod.rs; fix fastq.rs buffering
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1 mese fa |
|
Thomas
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2d9b97dcea
fix and audit fasta.rs, gff.rs, liftover.rs
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1 mese fa |
|
Thomas
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f3d94897a1
audit and refactor src/io/pod5_infos.rs
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1 mese fa |
|
Thomas
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11ec9f65cd
fix and audit src/io/straglr.rs
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1 mese fa |
