 Thomas
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d2b910af0b
add BgzTabixWriter with IndexFormat enum and refactor convert_bgz_with_tabix
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hai 1 mes |
|
Thomas
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c3934a3c28
fix atomic BGZF write in readers.rs and writers.rs using TempFileGuard
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hai 1 mes |
|
Thomas
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f2572964e4
audit and fix src/io/readers.rs
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hai 1 mes |
|
Thomas
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4dde55f778
audit and fix src/io/bed.rs
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hai 1 mes |
|
Thomas
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bd93786500
refactor and audit src/io/bam.rs
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hai 1 mes |
|
Thomas
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dcd1aa64f7
assembler pipe with recursion
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hai 1 mes |
|
Thomas
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44067c4310
assembler pipe
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hai 1 mes |
|
Thomas
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b85b028475
coral
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hai 1 mes |
|
Thomas
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15bce449b8
new bgz writer remove BGZIP crate cause of error writing big bgzip files
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hai 1 mes |
|
Thomas
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871e6e4129
scan
|
hai 1 mes |
|
Thomas
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49c56654c3
scan
|
hai 1 mes |
|
Thomas
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09c26b3b2c
scan
|
hai 1 mes |
|
Thomas
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d6250eeae7
coral
|
hai 1 mes |
|
Thomas
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37eef933cf
better scan
|
hai 1 mes |
|
Thomas
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6d4dfaf4ad
better scan
|
hai 1 mes |
|
Thomas
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9681be650f
better scan
|
hai 1 mes |
|
Thomas
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9183f25a61
better scan
|
hai 1 mes |
|
Thomas
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70dc1304d2
better scan
|
hai 1 mes |
|
Thomas
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4848af2a3a
better gatk
|
hai 1 mes |
|
Thomas
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dce4a111cc
nanomonsv -> mediumq; GATK ok
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hai 1 mes |
|
Thomas
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9ddb488f87
robuster epilog parsing
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hai 1 mes |
|
Thomas
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22d9b9f29d
savana_mem for slurm max mem
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hai 1 mes |
|
Thomas
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f216c34dce
reduced clairS threads; added slurm_max_par default: 10; use of run! and run_many! in bam import
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hai 1 mes |
|
Thomas
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27489a85bc
config;panel_bam
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hai 1 mes |
|
Thomas
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a631c652db
Infos.freq_maf()
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hai 1 mes |
|
Thomas
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9e3c086a44
Infos fields for dbSNP
|
hai 1 mes |
|
Thomas
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fe19eb6036
scan remove chrM
|
hai 3 meses |
|
Thomas
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caee96be9e
scan remove chrM
|
hai 3 meses |
|
Thomas
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96474698f0
scan remove chrM
|
hai 3 meses |
|
Thomas
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841fa84fa2
unactivate reheader
|
hai 3 meses |
